View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20520_high_14 (Length: 327)
Name: NF20520_high_14
Description: NF20520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20520_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 2 - 315
Target Start/End: Complemental strand, 54263146 - 54262832
Alignment:
| Q |
2 |
ccattaagacattgtaagccgacttaacagaatagaaatttgacgagtcctccacccaaactatacaatctttttctaccctccatgatgataacctttt |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54263146 |
ccattaagacattgtaagccgacttaacagaatagaaatttgacgagtcctccacccaaactatacaatctttttctaccctccatgatgataacctttt |
54263047 |
T |
|
| Q |
102 |
ctaattcctcgatcatgcgatgaagcaattccgcttaccgcttgaataactctcttctccacctaaaatcccacacccggttcccaccaatttccctctt |
201 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54263046 |
ctaattcctcaatcatgcgatgaagcaattccgcttaccgctagaataactctcttctccacctaaaatcccacacccggttcccaccaatttccctctt |
54262947 |
T |
|
| Q |
202 |
caacaccatcaccttggcctctttgttcaaagataaggaaaatagttgatcagttctcatttttaatgacctcccct-cccacccaatggtcactccaaa |
300 |
Q |
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|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
54262946 |
caacaccatcaccttagcctctttgttcaaagataaggaaaatagttgatcagttctcatttttaatgacctcccctccccacccaatggtcactccaaa |
54262847 |
T |
|
| Q |
301 |
ataaagtatcctctc |
315 |
Q |
| |
|
||||||||||||||| |
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| T |
54262846 |
ataaagtatcctctc |
54262832 |
T |
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