View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20520_high_2 (Length: 617)
Name: NF20520_high_2
Description: NF20520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20520_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 329 - 612
Target Start/End: Original strand, 41705459 - 41705742
Alignment:
| Q |
329 |
cttcaacctcggaccccactcccaacccataactctctacatggacacaggaagtgaccttgtttggttcccatgcacaccgttcaactgcatcctctgt |
428 |
Q |
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| T |
41705459 |
cttcaacctcggaccccactcccaacccataactctctacatggacacaggaagtgaccttgtttggttcccatgcacaccgttcaactgcatcctctgt |
41705558 |
T |
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| Q |
429 |
gaattaaaacccaagcttacctcggatccctctccccctaccaacatctcccacagcacccccatttcatgcaactcccatgcatgctctgtagcacaca |
528 |
Q |
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| T |
41705559 |
gaattaaaacccaagcttacctcggatccctctccccctaccaacatctcccacagcacccccatttcatgcaactcccatgcatgctctgtagcacaca |
41705658 |
T |
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| Q |
529 |
gttccaccccctcttccgatctatgcacaatggctcattgccctttagactccattgaaaccaaagactgcggttcatctcact |
612 |
Q |
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| T |
41705659 |
gttccaccccctcttccgatctatgcacaatggctcattgccctttagactccattgaaaccaaagactgcggttcatttcact |
41705742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 41705132 - 41705399
Alignment:
| Q |
1 |
atcatcacacaccactccatctacaaattcaaaaactcttctcctctctctgtattcaagttccaacacnnnnnnnncaaatac--tgtttaaccaaatg |
98 |
Q |
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| T |
41705132 |
atcatcacacaccactccatctacaaattcaaaaactcttctcctctct--gtattcaagttccaacacaaaaaaa-caaataccctgtttaaccaaatg |
41705228 |
T |
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| Q |
99 |
gcttctcccctgttatttctcctcatcatcacactcttcatttcacattcttcatctcaaatgctactattacctctaacacactcactctccataatag |
198 |
Q |
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| T |
41705229 |
gcttctcccctgttatttctcctcctcatcacactcttcatttcacattcttcatctcaaatgctactattacctctaacacactcactctccatgatag |
41705328 |
T |
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| Q |
199 |
aattcaacacaacccaccacctccttaaatccacctcaactcactcattatcacgcttccaccgccataaa |
269 |
Q |
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| T |
41705329 |
aattcaacacaacccaccacctccttaaatccacctcaactcactcattatcacgcttccaccgccataaa |
41705399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 431
Target Start/End: Complemental strand, 3744418 - 3744338
Alignment:
| Q |
351 |
caacccataactctctacatggacacaggaagtgaccttgtttggttcccatgcacaccgttcaactgcatcctctgtgaa |
431 |
Q |
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|||| |||||| ||||||||||||||||| || ||||||||||||||||| || |||| ||| | ||||| ||||||||| |
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| T |
3744418 |
caactcataacactctacatggacacaggtagcgaccttgtttggttcccttgttcacctttcgaatgcattctctgtgaa |
3744338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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