View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20520_high_3 (Length: 596)
Name: NF20520_high_3
Description: NF20520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20520_high_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 18 - 596
Target Start/End: Original strand, 34899398 - 34899975
Alignment:
| Q |
18 |
cccttttgttttgacacttctctaattgtttcttgtggtgctatttggatccttcttaaactcaacttgtatttattgggatctctttttcgtttaatat |
117 |
Q |
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| T |
34899398 |
cccttttgttttgacacttctctaattgtttcttgtggtgctatttggatccttcttaaactcaacttgtatttattgggatctctttttcgtttaatat |
34899497 |
T |
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| Q |
118 |
aatttttgacttcttcaacnnnnnnnntctatgaagaagtgtctgctaagacttacaaataattagttggtagctgaatgcagaaaattgaatatcgaaa |
217 |
Q |
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| T |
34899498 |
aatttttgacttcttcaacaaaaaaaatctatgaagaagtgtctgctaagacttacaaataattagttggtagctgaatgcagaaaattgaatatcgaaa |
34899597 |
T |
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| Q |
218 |
atgtgtctctaaaaatgttcttagttattaggagaacctcaattagtgggtcagttgacatgttccacttggtttttatgcgtaacgtaccacacaagca |
317 |
Q |
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| T |
34899598 |
atgtgtctctaaaaatgttcttagttattaggagaacctcaactagtgggtcagttgacatgttccacttggtttttatgcgtaa-gtaccacacaagca |
34899696 |
T |
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| Q |
318 |
tatgcaaatgttataataagataggcaagagataccaaattatcatattgtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagat |
417 |
Q |
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| T |
34899697 |
tatgcaaatgttataataagataggcaagagataccaaattatcatattgtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagat |
34899796 |
T |
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| Q |
418 |
acatacctttcatgtttggtgagaatggaaggaaaattttgagactataaggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaa |
517 |
Q |
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| T |
34899797 |
acatacctttcatgtttggtgagaatggaaggaaaattttgagactataaggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaa |
34899896 |
T |
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| Q |
518 |
tagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat |
596 |
Q |
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| T |
34899897 |
tagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat |
34899975 |
T |
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