View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20520_high_4 (Length: 385)

Name: NF20520_high_4
Description: NF20520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20520_high_4
NF20520_high_4
[»] chr1 (1 HSPs)
chr1 (79-375)||(46752389-46752681)


Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 79 - 375
Target Start/End: Original strand, 46752389 - 46752681
Alignment:
Q  79 atagtaaggagtgcaaactattttgtcatgttttagggttgtggcaaaagacactgtttcgtatttcttttaacataatatgggtctcagaaagcttcag 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    |||||||||||||||||||    
T  46752389 atagtaaggagtgcaaactattttgtcatgttttagggttgtggcaaaagacactggttcgtatttcttttaacata----gggtctcagaaagcttcag 46752484  T
Q  179 tgcatggtcactatttggattggaaccttctttgcaatcatggctgttaatactagctgatacagttgttaatgaagctactgatattttgttttattct 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  46752485 tgcatggtcactatttggattggaaccttctttgcaatcatggctgttaatactagctgatacagttgttaatgaagctgctgatattttgttttattct 46752584  T
Q  279 aaattctaaaagatcttttttcagctaaattttatataaataaatctatcaatcttttagatttttgtgggtgcaatcttaccagaacccttcatct 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46752585 aaattctaaaagatcttttttcagctaaattttatataaataaatctatcaatcttttagatttttgtgggtgcaatcttaccagaacccttcatct 46752681  T

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