View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20520_high_6 (Length: 355)
Name: NF20520_high_6
Description: NF20520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20520_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 63 - 334
Target Start/End: Original strand, 31541573 - 31541835
Alignment:
| Q |
63 |
gaaggaatgtaaattgtaattgtaatatgagtagaggtggatcatggaccaatatatatatnnnnnnnnnnnnnnnnngatgatcttaaattaattatta |
162 |
Q |
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| T |
31541573 |
gaaggaatgtaaattgcaattgtaatatgaatagaggtggatcatggaccaatatatatataaaaaaa----------gatgatcttaaattaattatta |
31541662 |
T |
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| Q |
163 |
acgaggttgaaccc-ttttcaagctactgttcccattagcactattgttaacacttaacagagtataccatcaactattataggctgtaaagagagagca |
261 |
Q |
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|||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31541663 |
acgaggttgaaccccttttcaagccactgttcccattagcattattgttaacacttaacagagtataccatcaactattataggctgtaaagagagaaca |
31541762 |
T |
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| Q |
262 |
acaatataatgcgatcaaagatcacttaatttgattacttttcccatcaaatttttcatgaaaaatctaagag |
334 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31541763 |
acaatataatgcgatcaaagatcacttaatttgattgcttttcccatcaaatttttcatgaaaaatctaagag |
31541835 |
T |
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