View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20521_high_14 (Length: 275)
Name: NF20521_high_14
Description: NF20521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20521_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 39535842 - 39535583
Alignment:
| Q |
1 |
gtaaaacaaaacattgaaaccagtgatggaagacaaacagtggaagattttctgagaaattactttggtttcaagcatgattttctaggagtggttgctc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39535842 |
gtaaaacaaaacattgaaaccagtgatggaagacaaacagtggaagattttctgagaaattactttggtttcaagcatgattttctaggagtggttgctc |
39535743 |
T |
|
| Q |
101 |
ttgtcaatattgcatttccaatagtttttgctttggtctttgccttatcaatcaagatgttcaatttccaaaggcgataggaacattcaattttaacttt |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39535742 |
ttgtcaatgttgcatttccaatagtttttgctttggtctttgccttatcaatcaagatgttcaatttccaaaggcgataagaacattcaattttaacttt |
39535643 |
T |
|
| Q |
201 |
tttgtataggaattccatctaaagaagaaatttacatattgtatcatggatagagattag |
260 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39535642 |
tttgtataggaattccatctaaagaagaaatttacatattgtatcatggatagagattag |
39535583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 39368451 - 39368644
Alignment:
| Q |
1 |
gtaaaacaaaacattgaaaccagtgatggaagacaaacagtggaagattttctgagaaattactttggtttcaagcatgattttctaggagtggttgctc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39368451 |
gtaaaacaaaacattgaaaccagtgatggaagacaaacagtggaagattttctgagaaattactttggtttcaagcatgattttctaggagtggttgctc |
39368550 |
T |
|
| Q |
101 |
ttgtcaatattgcatttccaatagtttttgctttggtctttgccttatcaatcaagatgttcaatttccaaaggcgataggaacattcaatttt |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||| | |||||||||||||| |
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| T |
39368551 |
ttgtcaatattgcatttccaatagtttttgctttggtctttgccatagcaatcaagatgtttaatttccaaaggcgttgagaacattcaatttt |
39368644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 39545203 - 39544980
Alignment:
| Q |
2 |
taaaacaaaacattgaaaccagtgatggaagacaaacagtggaagattttctgagaaattactttggtttcaagcatgattttctaggagtggttgctct |
101 |
Q |
| |
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|||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39545203 |
taaaacaaaacattgaaaccagtgatagaagccaaacagtgaaagattttctgagaaattactttggtttcaagcatgattttctaggaatggttgctct |
39545104 |
T |
|
| Q |
102 |
tgtcaatattgcatttccaatagtttttgctttggtctttgccttatcaatcaagatgttcaatttccaaaggcgataggaacattcaattttaactttt |
201 |
Q |
| |
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||||||| ||||||||||||||| ||||||||||| |||||| || ||||||||||||| |||||||||||||| || |||||||||||||| || ||| |
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| T |
39545103 |
tgtcaatgttgcatttccaatagcatttgctttggtgtttgccatagcaatcaagatgtttaatttccaaaggcgttaagaacattcaatttt-acattt |
39545005 |
T |
|
| Q |
202 |
ttgtataggaattccatctaaagaa |
226 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
39545004 |
ttgtataggaattccatctaaagaa |
39544980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 39355706 - 39355934
Alignment:
| Q |
1 |
gtaaaacaaaacattgaaaccagtgatggaagacaaacagtggaagattttctgagaaattactttggtttcaagcatgattttctaggagtggttgctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39355706 |
gtaaaacaaaacattgaaaccagtgatggaagacaaacagtggaagaatttttgagaaattactttggtttcaagcatgattttctaggagtggttgctc |
39355805 |
T |
|
| Q |
101 |
ttgtcaatattgcatttccaatagtttttgctttggtctttgccttatcaatcaagatgttcaatttccaaaggcgataggaacattcaattttaacttt |
200 |
Q |
| |
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|||||||| ||||||||||||||| ||||||||||| |||||| || ||||||||||||| |||||||||||||| || |||||||| ||| | || |
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| T |
39355806 |
ttgtcaatgttgcatttccaatagcatttgctttggtgtttgccatagcaatcaagatgtttaatttccaaaggcgttaagaacattcggatttttc-tt |
39355904 |
T |
|
| Q |
201 |
tttgtataggaattccatctaaagaagaaa |
230 |
Q |
| |
|
||||||||||| |||||||||||||||||| |
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| T |
39355905 |
tttgtataggagttccatctaaagaagaaa |
39355934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 39527369 - 39527181
Alignment:
| Q |
1 |
gtaaaacaaaacattgaaaccagtgatggaagacaaacagtggaagattttctgagaaattactttggtttcaagcatgattttctaggagtggttgctc |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39527369 |
gtaaaacaaaacattgaaactagtgatggaagacaaacagtggaagattttctgagaaattactttggtttcaagcatgattttctaggaatggttgctc |
39527270 |
T |
|
| Q |
101 |
ttgtcaatattgcatttccaatagtttttgctttggtctttgccttatcaatcaagatgttcaatttccaaaggcgataggaacattca |
189 |
Q |
| |
|
|||||||| |||||| |||||||| ||||||||||| |||||| || ||||||||||||| ||||||||||| || || ||||||||| |
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| T |
39527269 |
ttgtcaatgttgcatgtccaatagcatttgctttggtgtttgccatagcaatcaagatgtttaatttccaaagccgttaagaacattca |
39527181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 10 - 193
Target Start/End: Complemental strand, 39562027 - 39561844
Alignment:
| Q |
10 |
aacattgaaaccagtgatggaagacaaacagtggaagattttctgagaaattactttggtttcaagcatgattttctaggagtggttgctcttgtcaata |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
39562027 |
aacattgaaaccagtgatggaagacaaacagtagaaggttttctgaaaaactactttgatttcaagcatgattttctaggagtggttgctcttgttaatg |
39561928 |
T |
|
| Q |
110 |
ttgcatttccaatagtttttgctttggtctttgccttatcaatcaagatgttcaatttccaaaggcgataggaacattcaattt |
193 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||| || ||||||||||||| |
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| T |
39561927 |
ttgcatttccaataggttttgctttggtctttgccatatcaatcaagatgtttaatttccaaaggcgctaagaacattcaattt |
39561844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 2 - 230
Target Start/End: Original strand, 39340899 - 39341126
Alignment:
| Q |
2 |
taaaacaaaacattgaaaccagtgatggaagacaaacagtggaagattttctgagaaattactttggtttcaagcatgattttctaggagtggttgctct |
101 |
Q |
| |
|
||||| ||||||||||| ||| ||||||||| ||||| |||||||| ||| ||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
39340899 |
taaaaaaaaacattgaatccaatgatggaagccaaaccgtggaagaatttttgagaaactactttggtttcaagcctgattttctaggagtggttgctct |
39340998 |
T |
|
| Q |
102 |
tgtcaatattgcatttccaatagtttttgctttggtctttgccttatcaatcaagatgttcaatttccaaaggcgataggaacattcaattttaactttt |
201 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||| ||| || || |||| |||||||| |||||||||||||| || |||||||| ||| | ||| |
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| T |
39340999 |
tgtcaatgttgcatttccaatagcatttgctttggtgttttccatagcaattaagatgtttaatttccaaaggcgttaagaacattcggatttttc-ttt |
39341097 |
T |
|
| Q |
202 |
ttgtataggaattccatctaaagaagaaa |
230 |
Q |
| |
|
|||||||||| |||||||||||||||||| |
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|
| T |
39341098 |
ttgtataggagttccatctaaagaagaaa |
39341126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 39341681 - 39341854
Alignment:
| Q |
21 |
cagtgatggaagacaaacagtggaagattttctgagaaattactttggtttcaagcatgattttctaggagtggttgctcttgtcaatattgcatttcca |
120 |
Q |
| |
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||||| |||||| ||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
39341681 |
cagtgttggaagccaaactgtggaaggttttctgagaaattactttggtttcaagaatgattttctaggagtagttgctcttgtcaatgttgcatttcca |
39341780 |
T |
|
| Q |
121 |
atagtttttgctttggtctttgccttatcaatcaagatgttcaatttccaaaggcgataggaacattcaatttt |
194 |
Q |
| |
|
||||||||||||||| | ||| | ||||||| |||||||| | |||||||||||| || |||||||||||||| |
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|
| T |
39341781 |
atagtttttgctttgttttttcctatatcaataaagatgtttagtttccaaaggcgttaagaacattcaatttt |
39341854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 77 - 230
Target Start/End: Complemental strand, 1082404 - 1082252
Alignment:
| Q |
77 |
atgattttctaggagtggttgctcttgtcaatattgcatttccaatagtttttgctttggtctttgccttatcaatcaagatgttcaatttccaaaggcg |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||| |||||||||||||||| ||||| |||||||| |
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| T |
1082404 |
atgattttctaggagtggttgctcttgtcaatgttgcattttcaatagcttttgctttggtctttgccatatcaatcaagatgtttaattttcaaaggcg |
1082305 |
T |
|
| Q |
177 |
ataggaacattcaattttaacttttttgtataggaattccatctaaagaagaaa |
230 |
Q |
| |
|
|| || | ||||||||| ||||||||||||| ||||||||||||||| ||||| |
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|
| T |
1082304 |
ttaagagcgttcaatttt-acttttttgtatatgaattccatctaaaggagaaa |
1082252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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