View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20521_high_17 (Length: 257)

Name: NF20521_high_17
Description: NF20521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20521_high_17
NF20521_high_17
[»] chr4 (20 HSPs)
chr4 (10-218)||(39382959-39383167)
chr4 (15-218)||(24038068-24038271)
chr4 (10-214)||(31431037-31431241)
chr4 (10-216)||(24246538-24246744)
chr4 (10-213)||(18140375-18140578)
chr4 (10-213)||(49127588-49127791)
chr4 (15-201)||(51834225-51834412)
chr4 (38-136)||(53404111-53404209)
chr4 (38-131)||(30418397-30418490)
chr4 (64-138)||(28911579-28911653)
chr4 (38-136)||(45105807-45105904)
chr4 (38-135)||(53663635-53663732)
chr4 (40-136)||(28963870-28963966)
chr4 (38-136)||(52058252-52058350)
chr4 (40-136)||(22606362-22606458)
chr4 (38-136)||(38767791-38767889)
chr4 (41-103)||(16203097-16203159)
chr4 (41-103)||(39732843-39732905)
chr4 (41-103)||(50523874-50523936)
chr4 (71-136)||(49723784-49723848)
[»] chr6 (8 HSPs)
chr6 (15-218)||(30018769-30018972)
chr6 (28-210)||(31746179-31746359)
chr6 (41-138)||(4146810-4146907)
chr6 (38-136)||(365591-365689)
chr6 (41-103)||(20838498-20838560)
chr6 (41-103)||(27825057-27825119)
chr6 (38-136)||(10683167-10683265)
chr6 (38-136)||(21517357-21517455)
[»] chr3 (22 HSPs)
chr3 (10-217)||(51129016-51129223)
chr3 (10-214)||(47141403-47141607)
chr3 (10-214)||(47696999-47697203)
chr3 (10-214)||(52691927-52692131)
chr3 (16-214)||(1527531-1527729)
chr3 (10-215)||(38469067-38469272)
chr3 (38-136)||(33025798-33025896)
chr3 (38-136)||(51229727-51229825)
chr3 (38-136)||(42074392-42074490)
chr3 (37-136)||(53687376-53687475)
chr3 (72-136)||(51407464-51407528)
chr3 (38-136)||(28182370-28182468)
chr3 (38-134)||(48181071-48181167)
chr3 (40-118)||(11263709-11263787)
chr3 (38-136)||(42274518-42274616)
chr3 (38-136)||(45150598-45150696)
chr3 (40-136)||(48254506-48254602)
chr3 (64-99)||(45489137-45489172)
chr3 (41-103)||(30809842-30809904)
chr3 (38-136)||(31813401-31813499)
chr3 (38-136)||(39251476-39251574)
chr3 (41-103)||(44610827-44610889)
[»] chr2 (17 HSPs)
chr2 (10-217)||(44282491-44282698)
chr2 (10-214)||(31786699-31786903)
chr2 (10-214)||(40254344-40254548)
chr2 (10-214)||(14379660-14379864)
chr2 (10-205)||(31686789-31686984)
chr2 (10-210)||(2443667-2443868)
chr2 (38-136)||(37996718-37996816)
chr2 (38-133)||(3739048-3739143)
chr2 (38-136)||(7473518-7473616)
chr2 (38-136)||(37640761-37640859)
chr2 (38-136)||(14033372-14033470)
chr2 (38-136)||(13892752-13892850)
chr2 (38-136)||(14032877-14032975)
chr2 (38-136)||(17480814-17480912)
chr2 (38-136)||(35458185-35458283)
chr2 (41-102)||(37551592-37551653)
chr2 (38-136)||(43342277-43342375)
[»] chr1 (22 HSPs)
chr1 (10-213)||(5271505-5271708)
chr1 (10-216)||(26821380-26821586)
chr1 (15-217)||(50979242-50979444)
chr1 (10-219)||(36496053-36496262)
chr1 (10-214)||(38843151-38843355)
chr1 (15-214)||(15353228-15353427)
chr1 (10-217)||(38627535-38627742)
chr1 (10-215)||(7593205-7593410)
chr1 (10-214)||(51488497-51488701)
chr1 (10-214)||(27000268-27000472)
chr1 (28-210)||(27575898-27576081)
chr1 (38-137)||(47655888-47655987)
chr1 (64-138)||(11051188-11051262)
chr1 (41-103)||(1762251-1762313)
chr1 (41-138)||(11829075-11829172)
chr1 (213-253)||(31738482-31738522)
chr1 (38-136)||(6706132-6706230)
chr1 (38-136)||(13509940-13510038)
chr1 (38-136)||(46406421-46406519)
chr1 (38-107)||(4485183-4485252)
chr1 (38-107)||(7385254-7385323)
chr1 (73-138)||(46033716-46033781)
[»] chr8 (15 HSPs)
chr8 (10-214)||(30984303-30984507)
chr8 (15-214)||(30210394-30210593)
chr8 (10-214)||(34774349-34774553)
chr8 (60-170)||(629476-629586)
chr8 (10-64)||(189783-189837)
chr8 (10-64)||(717387-717441)
chr8 (10-64)||(878494-878548)
chr8 (64-138)||(924099-924173)
chr8 (38-136)||(35164381-35164474)
chr8 (38-136)||(35802344-35802442)
chr8 (171-214)||(308872-308915)
chr8 (38-136)||(8416662-8416760)
chr8 (38-136)||(45276403-45276501)
chr8 (41-103)||(3590107-3590169)
chr8 (90-136)||(36821679-36821725)
[»] chr7 (13 HSPs)
chr7 (10-214)||(31012404-31012608)
chr7 (16-214)||(25341452-25341650)
chr7 (28-159)||(41064585-41064717)
chr7 (38-137)||(37371078-37371177)
chr7 (38-136)||(14999868-14999966)
chr7 (38-136)||(25970433-25970531)
chr7 (38-134)||(26826384-26826480)
chr7 (41-138)||(39857075-39857172)
chr7 (38-136)||(30825190-30825288)
chr7 (38-136)||(43664814-43664912)
chr7 (38-136)||(25472765-25472863)
chr7 (38-136)||(12909229-12909327)
chr7 (41-103)||(32450784-32450846)
[»] chr5 (19 HSPs)
chr5 (10-213)||(29542443-29542646)
chr5 (10-217)||(42663353-42663560)
chr5 (10-214)||(3260840-3261044)
chr5 (10-216)||(33114954-33115160)
chr5 (10-218)||(14082809-14083017)
chr5 (41-138)||(2526282-2526379)
chr5 (68-136)||(53697-53765)
chr5 (37-134)||(8958502-8958599)
chr5 (39-136)||(37066560-37066657)
chr5 (38-136)||(33229204-33229302)
chr5 (38-136)||(39236896-39236994)
chr5 (41-103)||(10900165-10900227)
chr5 (41-103)||(19375409-19375471)
chr5 (38-136)||(27739351-27739449)
chr5 (39-136)||(41040137-41040234)
chr5 (64-103)||(33387722-33387761)
chr5 (38-136)||(7073275-7073373)
chr5 (38-136)||(21022632-21022730)
chr5 (38-136)||(41742222-41742320)
[»] scaffold0069 (1 HSPs)
scaffold0069 (67-136)||(16815-16884)
[»] scaffold0006 (1 HSPs)
scaffold0006 (38-135)||(91535-91634)


Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 218
Target Start/End: Original strand, 39382959 - 39383167
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39382959 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 39383058  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39383059 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 39383158  T
Q  210 aggcttaat 218  Q
    |||||||||    
T  39383159 aggcttaat 39383167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 24038068 - 24038271
Alignment:
Q  15 gatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagcta 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24038068 gatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagcta 24038167  T
Q  115 ttttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacagaggct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24038168 ttttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacagaggct 24038267  T
Q  215 taat 218  Q
    ||||    
T  24038268 taat 24038271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 214
Target Start/End: Original strand, 31431037 - 31431241
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31431037 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaa 31431136  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31431137 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 31431236  T
Q  210 aggct 214  Q
    |||||    
T  31431237 aggct 31431241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 24246744 - 24246538
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24246744 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaa 24246645  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24246644 agctattttgaaaagccaaaccaaacatgttaaatattgcataattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 24246545  T
Q  210 aggctta 216  Q
    |||||||    
T  24246544 aggctta 24246538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 213
Target Start/End: Complemental strand, 18140578 - 18140375
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  18140578 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactaaaattgcttttggaggataaa 18140479  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18140478 agctattttaaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 18140379  T
Q  210 aggc 213  Q
    ||||    
T  18140378 aggc 18140375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 213
Target Start/End: Complemental strand, 49127791 - 49127588
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  49127791 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactaaaattgcttttggaggataaa 49127692  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49127691 agctattttaaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 49127592  T
Q  210 aggc 213  Q
    ||||    
T  49127591 aggc 49127588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 51834225 - 51834412
Alignment:
Q  15 gatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagcta 114  Q
    ||||||||| || |||||||| ||||| |||||||||||| ||||  ||||||||||||||||||||| |   |||||||||||||||||||| |||| |    
T  51834225 gatggaattgatggaattgagagtgtataattgattctagaaaagccagaagttaggaattgtagctttatggagaattgcttttggaggatagaagcaa 51834324  T
Q  115 ttttgaaaagccaaaccaaacatgtta-aatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaa 201  Q
    || ||||||| |||||||||||| ||| ||| ||| ||||||||||||| |||| |  ||||||| |||| ||| | |||||| ||||    
T  51834325 ttctgaaaagtcaaaccaaacatattagaatgttgtagaattgcttttggaatgttatagaattgcttctagctgtacaaaagtcaaa 51834412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 53404111 - 53404209
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    |||| ||||||||||||||||   | ||| ||||||||||||||| ||  |||||||||||||||||||| |||||||  | |||||||||||||||||    
T  53404111 tgtaaaattgattctaggaaaaccaaaagctaggaattgtagctttaaggagaattgcttttggaggatagaagctatgcttaaaagccaaaccaaaca 53404209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 30418397 - 30418490
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaacc 131  Q
    ||||||||||||||||||||||  | ||||||||| ||||||||| ||  | |||||||||||||||||| || | ||||| ||||||||||||    
T  30418397 tgtagaattgattctaggaaagctaaaagttaggatttgtagcttgaaggataattgcttttggaggatagaatcaatttttaaaagccaaacc 30418490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 28911653 - 28911579
Alignment:
Q  64 aagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaacatg 138  Q
    ||||||||||||||||||||| | | ||||||||||||||| || |||| ||| ||| |||||||||||||||||    
T  28911653 aagttaggaattgtagcttcatccacaattgcttttggagggtagaagcaattctgataagccaaaccaaacatg 28911579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 45105904 - 45105807
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||| |||| || ||| || ||||| |||||| ||  |||||||||| ||||||||| |||| ||| |||||||||||||||||||    
T  45105904 tgtagaattgattctagaaaagcaa-aagctatgaattttagctttaagaagaattgcttctggaggatataagcaattctgaaaagccaaaccaaaca 45105807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 53663635 - 53663732
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaac 135  Q
    ||||||||||||| ||||||||  | ||||||||||||||||||| ||  | |||||||||||||||||| || | ||| | |||||||||| |||||    
T  53663635 tgtagaattgattataggaaagccaaaagttaggaattgtagctttaaggataattgcttttggaggatagaatcaattctaaaaagccaaatcaaac 53663732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 28963870 - 28963966
Alignment:
Q  40 tagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||| ||||  ||||||||||| ||||||||| ||  | |||||||||||||||||| || | ||| | ||||| |||||||||||    
T  28963870 tagaattgattctagaaaagctagaagttaggatttgtagctttaagaataattgcttttggaggatataatcaattcttaaaagtcaaaccaaaca 28963966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 52058252 - 52058350
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||  ||||  | ||| ||||| ||||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  52058252 tgtagaattgattctacaaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 52058350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 22606362 - 22606458
Alignment:
Q  40 tagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||| ||||||| | ||| ||||| |||||||||||   | |||||||||||||||||| |||| ||| | |||||  ||||||||||    
T  22606362 tagaattgattcttggaaagtcaaaagctaggatttgtagcttcacgaataattgcttttggaggatagaagcaattcttaaaagttaaaccaaaca 22606458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 38767889 - 38767791
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||| ||||||  | ||  ||||  ||||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  38767889 tgtagaattgattcttggaaagccaaaaactaggctttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 38767791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 16203097 - 16203159
Alignment:
Q  41 agaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggag 103  Q
    ||||||||||||||  || | | ||| ||||||||||||||||||| | ||||||||||||||    
T  16203097 agaattgattctagtcaactcaaaagctaggaattgtagcttcaaccaaaattgcttttggag 16203159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 39732905 - 39732843
Alignment:
Q  41 agaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggag 103  Q
    ||||||||||||||  || | | ||| ||||||||||||||||| | ||||||||||||||||    
T  39732905 agaattgattctagctaactcaaaagctaggaattgtagcttcatccagaattgcttttggag 39732843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 50523874 - 50523936
Alignment:
Q  41 agaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggag 103  Q
    ||||||||||||||  || | | ||| ||||||||||||||||| | ||||||||||||||||    
T  50523874 agaattgattctagctaactcaaaagctaggaattgtagcttcatccagaattgcttttggag 50523936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 49723848 - 49723784
Alignment:
Q  71 gaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    |||||||||||| ||| |||||| ||||||||||||| || | ||| | |||||||||||||||||    
T  49723848 gaattgtagctttaacgagaatt-cttttggaggatagaaacaattcttaaaagccaaaccaaaca 49723784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 30018972 - 30018769
Alignment:
Q  15 gatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagcta 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30018972 gatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagataggaattgtagcttcaactagaattgcttttggaggataaaagcta 30018873  T
Q  115 ttttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacagaggct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30018872 ttttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacagaggct 30018773  T
Q  215 taat 218  Q
    ||||    
T  30018772 taat 30018769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 31746179 - 31746359
Alignment:
Q  28 gaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagcca 127  Q
    ||||||||| ||||||||||||||||| ||||  | ||||||||||||||||||  |   |||||||||||||||||||| |||| ||||||||||| ||    
T  31746179 gaattgaggatgtagaattgattctagaaaagccataagttaggaattgtagctatatggagaattgcttttggaggatagaagcaattttgaaaagtca 31746278  T
Q  128 aaccaaacatgtt-aaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacaga 210  Q
    |||||||||| ||  ||| ||| |||||||||||||||| | |  ||||||| ||||   | | ||||||||||||||||||||    
T  31746279 aaccaaacatattggaatgttgtagaattgcttttgaaaagttgtagaattgcttct---tgtacaaaagccaaaccaaacaga 31746359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 4146907 - 4146810
Alignment:
Q  41 agaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaacatg 138  Q
    ||||||||||||||  || | | ||| ||||||||||||||||| | |||||||||||||| || || |||| ||| |||||||||||||||||||||    
T  4146907 agaattgattctagttaactcaaaagctaggaattgtagcttcatccagaattgcttttggggggtagaagcaattctgaaaagccaaaccaaacatg 4146810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 365689 - 365591
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    |||| |||||| ||||| ||||| ||||||||||| ||||||||| ||  | ||||||||||||| |||| || | ||| | ||||| |||||||||||    
T  365689 tgtaaaattgagtctagaaaagttagaagttaggatttgtagctttaaggataattgcttttggatgatagaatcaattcttaaaagtcaaaccaaaca 365591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 20838498 - 20838560
Alignment:
Q  41 agaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggag 103  Q
    |||||||||| ||| ||| | | ||||||||| ||||||||||||| ||||||||||||||||    
T  20838498 agaattgattatagtaaactcaaaagttaggatttgtagcttcaaccagaattgcttttggag 20838560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 27825119 - 27825057
Alignment:
Q  41 agaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggag 103  Q
    ||||||||||||||  || | | ||||||||||||||||||||||| | ||||||||||||||    
T  27825119 agaattgattctagttaactgaaaagttaggaattgtagcttcaaccataattgcttttggag 27825057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 10683265 - 10683167
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||| |||   ||||||||||| ||||||||| ||  | ||||  |||| ||||||| || | ||| | |||||||||||||||||    
T  10683265 tgtagaattgattctagaaaaactagaagttaggatttgtagctttaaggataattaattttagaggatagaatcaattcttaaaagccaaaccaaaca 10683167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 21517357 - 21517455
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||  ||||  | ||| ||||| |||||||||||   | |||||||||||||||||| || | ||| | ||||| |||||||||||    
T  21517357 tgtagaattgattctacaaaagccaaaagctaggatttgtagcttcatggataattgcttttggaggatagaatcaattcttaaaagtcaaaccaaaca 21517455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 217
Target Start/End: Original strand, 51129016 - 51129223
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  51129016 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaa 51129115  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51129116 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 51129215  T
Q  210 aggcttaa 217  Q
    ||||||||    
T  51129216 aggcttaa 51129223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 214
Target Start/End: Original strand, 47141403 - 47141607
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47141403 gcagggatggaattaatagaattgagggtgtagaattgattctaagaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaa 47141502  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  47141503 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaatgccaaaccaaacag 47141602  T
Q  210 aggct 214  Q
    |||||    
T  47141603 aggct 47141607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 214
Target Start/End: Complemental strand, 47697203 - 47696999
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47697203 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaa 47697104  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47697103 agctattttgaaaaggcaaaccaaacatgttaaatattgcagaattgcttttgaaatgcttcagaattgattctggctttgcaaaagccaaaccaaacag 47697004  T
Q  210 aggct 214  Q
    |||||    
T  47697003 aggct 47696999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 214
Target Start/End: Complemental strand, 52692131 - 52691927
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52692131 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 52692032  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    | ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52692031 atctatttttaaaagtcaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 52691932  T
Q  210 aggct 214  Q
    |||||    
T  52691931 aggct 52691927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 1527729 - 1527531
Alignment:
Q  16 atggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||     
T  1527729 atggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgctttcggaggataaaagctag 1527630  T
Q  116 tttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacagaggct 214  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1527629 tttgaaaagtcaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacagaggct 1527531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 38469272 - 38469067
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  38469272 gcagggatggaattaatagaattgagggtgtagaattgattataggaaagtaagaagctaagaattgtagcttcaactagaattgcttttggaggataaa 38469173  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    | |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38469172 aactattttgaaaaggtaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccataattgattctggctttgcaaaagccaaaccaaacag 38469073  T
Q  210 aggctt 215  Q
    ||||||    
T  38469072 aggctt 38469067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 33025798 - 33025896
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||| ||||||||  | ||| ||||||||||||||| ||  |||||||||||||||||||| |||| ||||||||||| |||||||||||    
T  33025798 tgtagaattgattataggaaagccaaaagctaggaattgtagctttaaggagaattgcttttggaggatagaagcaattttgaaaagtcaaaccaaaca 33025896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 51229825 - 51229727
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||||||||  | ||||||||||||||||||| ||  ||||||  |||||||||||| |||| |||||||||||| ||||||||||    
T  51229825 tgtagaattgattctaggaaagccaaaagttaggaattgtagctttaaggagaattatttttggaggatagaagcaattttgaaaagctaaaccaaaca 51229727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 42074490 - 42074392
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    |||||||||||||| || ||||| | ||| ||||||||||||||| ||  ||||||| |||||||||||| |||| ||| |||||||||||||||||||    
T  42074490 tgtagaattgattcgagcaaagtcaaaagctaggaattgtagctttaaggagaattgtttttggaggatagaagcaattctgaaaagccaaaccaaaca 42074392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 136
Target Start/End: Original strand, 53687376 - 53687475
Alignment:
Q  37 gtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    |||||||||||||| ||| ||||  | ||  ||||||||||||||| ||| |||||||||||||||||||| |||| ||| ||||||| |||||||||||    
T  53687376 gtgtagaattgattttagaaaagccaaaacctaggaattgtagctttaacaagaattgcttttggaggatagaagcaattatgaaaagtcaaaccaaaca 53687475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 51407528 - 51407464
Alignment:
Q  72 aattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||| | |||||||||||||||||| |||| ||| |||||||||||||||||||    
T  51407528 aattgtagcttcaaccaaaattgcttttggaggatagaagcaattctgaaaagccaaaccaaaca 51407464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 28182468 - 28182370
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||| ||||||||  | |||||||||||| |||||| ||  | ||||||| |||||||||| |||| ||| | |||||||||||||||||    
T  28182468 tgtagaattgattataggaaagccaaaagttaggaattttagctttaaggataattgctgttggaggatagaagcaattctaaaaagccaaaccaaaca 28182370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 48181167 - 48181071
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaa 134  Q
    ||||||||||||||||||||||  | ||| |||||||||||| || ||  |||||||||||||||||||| |||| ||| | ||| | |||||||||    
T  48181167 tgtagaattgattctaggaaagccaaaagctaggaattgtagttttaaggagaattgcttttggaggatagaagcaattctaaaatgtcaaaccaaa 48181071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 11263787 - 11263709
Alignment:
Q  40 tagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctatttt 118  Q
    ||||||||||||||||||||  | ||| ||||| ||||||||||||  | |||||||||||||||||| |||| |||||    
T  11263787 tagaattgattctaggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaatttt 11263709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 42274616 - 42274518
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    |||||||||||||||| |||||  | ||| ||||||||||| ||| ||  |||||||||||||||||||| || | ||| | |||||||||| ||||||    
T  42274616 tgtagaattgattctatgaaagccaaaagctaggaattgtaactttaaggagaattgcttttggaggatagaatcaattctaaaaagccaaatcaaaca 42274518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 45150696 - 45150598
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    |||||||||||||||||||||   | ||| ||||| ||||||||||||  | ||||| |||||||||||| || | ||| | |||||||||||||||||    
T  45150696 tgtagaattgattctaggaaaaccaaaagctaggatttgtagcttcaaggataattgtttttggaggatagaaacaattcttaaaagccaaaccaaaca 45150598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 48254506 - 48254602
Alignment:
Q  40 tagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||| ||||  ||||| ||||| ||||||||| ||  | |||||||||||||||||| || | ||| | ||||| |||||||||||    
T  48254506 tagaattgattctagaaaagctagaagctaggatttgtagctttaaggataattgcttttggaggatataatcaattcttaaaagtcaaaccaaaca 48254602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 45489137 - 45489172
Alignment:
Q  64 aagttaggaattgtagcttcaactagaattgctttt 99  Q
    ||||||||||||||||||||| ||||||||||||||    
T  45489137 aagttaggaattgtagcttcacctagaattgctttt 45489172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 30809904 - 30809842
Alignment:
Q  41 agaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggag 103  Q
    ||||||||||||||  || | | ||| ||||||||||||||||| | ||||||||||||||||    
T  30809904 agaattgattctagctaactcaaaagctaggaattgtagcttcatccagaattgcttttggag 30809842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 31813499 - 31813401
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||  ||||  | ||| ||||| |||||||||||   | |||||||||||||||||| || | ||| | ||||||||||| |||||    
T  31813499 tgtagaattgattctacaaaagccaaaagctaggatttgtagcttcatggataattgcttttggaggatagaatcaattcttaaaagccaaactaaaca 31813401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 39251574 - 39251476
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||  ||||| ||||||||||| ||||||||| |   | ||||| |||||||||||| || | ||| | ||||| |||| ||||||    
T  39251574 tgtagaattgattctaaaaaagttagaagttaggatttgtagctttagggataattgtttttggaggatataatcaattcttaaaagtcaaatcaaaca 39251476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 44610827 - 44610889
Alignment:
Q  41 agaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggag 103  Q
    |||||||||||||  ||| | | ||| ||| ||||||||||||||| ||||||||||||||||    
T  44610827 agaattgattctaataaactcaaaagctagaaattgtagcttcaaccagaattgcttttggag 44610889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 44282698 - 44282491
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44282698 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaa 44282599  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44282598 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 44282499  T
Q  210 aggcttaa 217  Q
    ||||||||    
T  44282498 aggcttaa 44282491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 214
Target Start/End: Complemental strand, 31786903 - 31786699
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31786903 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaa 31786804  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31786803 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 31786704  T
Q  210 aggct 214  Q
    |||||    
T  31786703 aggct 31786699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 214
Target Start/End: Complemental strand, 40254548 - 40254344
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40254548 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaa 40254449  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40254448 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 40254349  T
Q  210 aggct 214  Q
    |||||    
T  40254348 aggct 40254344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 214
Target Start/End: Complemental strand, 14379864 - 14379660
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14379864 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaa 14379765  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  14379764 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctgactttgcaaaagccaaaccaaacgg 14379665  T
Q  210 aggct 214  Q
    |||||    
T  14379664 aggct 14379660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 205
Target Start/End: Original strand, 31686789 - 31686984
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31686789 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaa 31686888  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31686889 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaa 31686984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 10 - 210
Target Start/End: Original strand, 2443667 - 2443868
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| ||||||||| || ||||||||||||||||||||||||||| ||||  | ||| ||||||||||||||| |   ||||||| |||||||||||| |    
T  2443667 gcagtgatggaattgatggaattgagggtgtagaattgattctagaaaaggcataagctaggaattgtagctttatggagaattgtttttggaggataga 2443766  T
Q  110 agctattttgaaaagccaaaccaaacatgtt-aaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaaca 208  Q
    ||| ||| |||||||||||||||||||| || |||| ||| ||||||||||||| |||| |  ||||||| |||  ||| | ||||||||||||||||||    
T  2443767 agcaattctgaaaagccaaaccaaacatattgaaatgttgtagaattgcttttggaatgttgtagaattgtttccagctgtacaaaagccaaaccaaaca 2443866  T
Q  209 ga 210  Q
    ||    
T  2443867 ga 2443868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 37996816 - 37996718
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    |||||||||||||| |||||||  | ||||||||||||||||||| ||   ||||| ||||||||||||| |||| ||| |||||||||||||||||||    
T  37996816 tgtagaattgattcaaggaaagccaaaagttaggaattgtagctttaaggtgaattacttttggaggatagaagcaattatgaaaagccaaaccaaaca 37996718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 3739048 - 3739143
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaa 133  Q
    |||||||||||||||| |||||| | || |||||||||||||||| ||  | ||||||||||||| |||| |||| ||| ||||||||||||||||    
T  3739048 tgtagaattgattctaagaaagtcaaaaattaggaattgtagctttaaggaaaattgcttttggatgatagaagcaattatgaaaagccaaaccaa 3739143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 7473616 - 7473518
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | ||||| |||||||||||| |||| ||| | |||| ||||||||||||    
T  7473616 tgtagaattgattcttggaaagccaaaagttaggatttgtagcttcaaggataattgtttttggaggatagaagcaattcttaaaaaccaaaccaaaca 7473518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 37640761 - 37640859
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||||||||  | ||| || || ||||||||||||  | |||||||||||||||||| |||| ||| |  ||||||||||||||||    
T  37640761 tgtagaattgattctaggaaagccaaaagctaagatttgtagcttcaaggataattgcttttggaggatagaagcaattcttgaaagccaaaccaaaca 37640859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 14033470 - 14033372
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||  ||||  | ||||||||| |||||||||||   | |||||||||||||||||| || | ||| | |||||||||||||||||    
T  14033470 tgtagaattgattctacaaaagccaaaagttaggatttgtagcttcatggataattgcttttggaggatagaatcaattcttaaaagccaaaccaaaca 14033372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 13892850 - 13892752
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||  ||||  | ||||||||| |||||||||||   | |||||||||||||||||| || | ||| | |||||||||| ||||||    
T  13892850 tgtagaattgattctacaaaagccaaaagttaggatttgtagcttcatggataattgcttttggaggatagaatcaattcttaaaagccaaatcaaaca 13892752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 14032975 - 14032877
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||  ||||  | ||||||||| |||||||||||   | |||||||||||||||||| || | ||| | |||||||||| ||||||    
T  14032975 tgtagaattgattctacaaaagccaaaagttaggatttgtagcttcatggataattgcttttggaggatagaatcaattcttaaaagccaaatcaaaca 14032877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 17480912 - 17480814
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||| ||||  ||||| ||||| ||||||||| ||  | ||||||||||| |||||| || | ||| | ||||||||||| |||||    
T  17480912 tgtagaattgattctagaaaagctagaagctaggatttgtagctttaaagataattgcttttgaaggatagaatcaattcttaaaagccaaactaaaca 17480814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 35458185 - 35458283
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||| ||||  ||||||||||| |||||| || ||  | ||||||||||||| |||| || | ||| | ||||| |||||||||||    
T  35458185 tgtagaattgattctagaaaagctagaagttaggatttgtagttttaaggataattgcttttggatgatagaatcaattcttaaaagtcaaaccaaaca 35458283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 37551653 - 37551592
Alignment:
Q  41 agaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttgga 102  Q
    ||||||||||||||  || | ||||  ||||||||||||||||||| |||||||||||||||    
T  37551653 agaattgattctagttaactcagaaactaggaattgtagcttcaaccagaattgcttttgga 37551592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 43342277 - 43342375
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||| ||||  ||||| ||| | ||||||||| ||  | |||||||||||||||||| || | ||| | |||| ||||| ||||||    
T  43342277 tgtagaattgattctagaaaagctagaagctagaatttgtagctttaaggataattgcttttggaggatagaatcaattcttaaaaaccaaatcaaaca 43342375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 5271505 - 5271708
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5271505 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 5271604  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5271605 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 5271704  T
Q  210 aggc 213  Q
    ||||    
T  5271705 aggc 5271708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 26821586 - 26821380
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26821586 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaa 26821487  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26821486 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 26821387  T
Q  210 aggctta 216  Q
    |||||||    
T  26821386 aggctta 26821380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 50979242 - 50979444
Alignment:
Q  15 gatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagcta 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50979242 gatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagcta 50979341  T
Q  115 ttttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacagaggct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50979342 ttttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacagaggct 50979441  T
Q  215 taa 217  Q
    |||    
T  50979442 taa 50979444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 219
Target Start/End: Original strand, 36496053 - 36496262
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36496053 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaa 36496152  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36496153 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 36496252  T
Q  210 aggcttaatg 219  Q
    |||| |||||    
T  36496253 aggcgtaatg 36496262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 214
Target Start/End: Complemental strand, 38843355 - 38843151
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38843355 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaa 38843256  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38843255 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 38843156  T
Q  210 aggct 214  Q
    |||||    
T  38843155 aggct 38843151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 15353427 - 15353228
Alignment:
Q  15 gatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagcta 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15353427 gatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagcta 15353328  T
Q  115 ttttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacagaggct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15353327 ttttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacagaggct 15353228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 38627742 - 38627535
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38627742 gcagggatgaaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaa 38627643  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38627642 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 38627543  T
Q  210 aggcttaa 217  Q
    ||||||||    
T  38627542 aggcttaa 38627535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 7593205 - 7593410
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7593205 gcagggatggaattaatagaattgagggtggagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaa 7593304  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7593305 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 7593404  T
Q  210 aggctt 215  Q
    ||||||    
T  7593405 aggctt 7593410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 214
Target Start/End: Original strand, 51488497 - 51488701
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  51488497 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaa 51488596  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51488597 agctattttgaaaagtcaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 51488696  T
Q  210 aggct 214  Q
    |||||    
T  51488697 aggct 51488701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 214
Target Start/End: Original strand, 27000268 - 27000472
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27000268 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaa 27000367  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27000368 aactattttgaaaagccaaaccaaatatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 27000467  T
Q  210 aggct 214  Q
    |||||    
T  27000468 aggct 27000472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 210
Target Start/End: Complemental strand, 27576081 - 27575898
Alignment:
Q  28 gaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagcca 127  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||  ||||||| ||| |   |||||||||||||||||||| |||| ||| ||||||| ||    
T  27576081 gaattgagggtgtagaattgattctagaaaagtcagaagctaaaaattgtaactttatggagaattgcttttggaggatagaagcaattatgaaaagtca 27575982  T
Q  128 aaccaaacatgtt-aaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacaga 210  Q
    |||||||||| || |||| ||| ||||||||||||| |||| |  ||||||| |||| ||| | ||||||||||||||||||||    
T  27575981 aaccaaacatattgaaatgttgtagaattgcttttggaatgttgtagaattgcttctagctgtacaaaagccaaaccaaacaga 27575898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 47655888 - 47655987
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaacat 137  Q
    ||||||||||||||||| ||||| ||||| ||||| ||||||||| ||  | |||||||||||||||||| || | ||| | ||||||||||||||||||    
T  47655888 tgtagaattgattctagaaaagttagaagctaggatttgtagctttaaggataattgcttttggaggatagaatcaattcttaaaagccaaaccaaacat 47655987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 64 - 138
Target Start/End: Original strand, 11051188 - 11051262
Alignment:
Q  64 aagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaacatg 138  Q
    |||||||||||||||| |||||| | ||||| |||||||||||| |||| ||||||||||| |||||||||||||    
T  11051188 aagttaggaattgtagattcaaccataattgtttttggaggatagaagcaattttgaaaagtcaaaccaaacatg 11051262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 1762313 - 1762251
Alignment:
Q  41 agaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggag 103  Q
    |||||||||||||| ||| | | ||||||||||||||||||||||| ||||||||||||||||    
T  1762313 agaattgattctagtaaacttaaaagttaggaattgtagcttcaaccagaattgcttttggag 1762251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 11829172 - 11829075
Alignment:
Q  41 agaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaacatg 138  Q
    ||||||||||||||  || | | |||||||||||| || ||||| | |||||||||||||||||||| |||| ||| | ||||| |||||||||||||    
T  11829172 agaattgattctagttaactcaaaagttaggaattataccttcatccagaattgcttttggaggatagaagcaattcttaaaaggcaaaccaaacatg 11829075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 31738482 - 31738522
Alignment:
Q  213 cttaatgtatccgcccctggtagctttcacatgtatatata 253  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31738482 cttaatgtatccgcccctggtagctttcacatgtatatata 31738522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 6706230 - 6706132
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||| ||||  ||||| ||||| ||||||||| ||  | ||||| |||||||||||| || | ||| | ||||||||||| |||||    
T  6706230 tgtagaattgattctagaaaagctagaagctaggatttgtagctttaaggataattgtttttggaggatagaatcaattcttaaaagccaaactaaaca 6706132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 13509940 - 13510038
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||| ||||  ||||| ||||| || |||||| ||  | |||||||||||||||||| || | ||| | |||||| ||||||||||    
T  13509940 tgtagaattgattctagaaaagctagaagctaggatttatagctttaaggataattgcttttggaggatagaatcaattcttaaaagctaaaccaaaca 13510038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 46406519 - 46406421
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||  ||||  | ||| || || |||||||||||   | |||||||||||||||||| || | ||| | |||||||||||||||||    
T  46406519 tgtagaattgattctacaaaagccaaaagctaagatttgtagcttcatggataattgcttttggaggatagaatcaattcttaaaagccaaaccaaaca 46406421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 4485183 - 4485252
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggata 107  Q
    |||| |||||||||||||||||  | ||||||| |||||||| || ||  ||||||| ||||||||||||    
T  4485183 tgtataattgattctaggaaagccaaaagttagaaattgtagttttaaggagaattgtttttggaggata 4485252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 7385323 - 7385254
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggata 107  Q
    |||| |||||||||||||||||  |||| |||||| ||||||||| ||  | ||||||||||| ||||||    
T  7385323 tgtaaaattgattctaggaaagctagaaattaggatttgtagctttaaagataattgcttttgaaggata 7385254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 46033716 - 46033781
Alignment:
Q  73 attgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaacatg 138  Q
    |||||| ||||||  ||||||| ||||| |||||| |||| ||||||||||| |||| ||||||||    
T  46033716 attgtaacttcaatgagaattgtttttgaaggatagaagcaattttgaaaagtcaaatcaaacatg 46033781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 214
Target Start/End: Original strand, 30984303 - 30984507
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30984303 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaa 30984402  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30984403 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 30984502  T
Q  210 aggct 214  Q
    |||||    
T  30984503 aggct 30984507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 30210593 - 30210394
Alignment:
Q  15 gatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagcta 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30210593 gatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagcta 30210494  T
Q  115 ttttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacagaggct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30210493 ttttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacagaggct 30210394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 214
Target Start/End: Original strand, 34774349 - 34774553
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34774349 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaa 34774448  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  34774449 aactattttaaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccaaaattgattctggctttgcaaaagccaaaccaaacag 34774548  T
Q  210 aggct 214  Q
    |||||    
T  34774549 aggct 34774553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 60 - 170
Target Start/End: Original strand, 629476 - 629586
Alignment:
Q  60 taagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaacatgttaaatattgcagaattgctt 159  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  629476 taagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaacatgttaaatattgcagaattgctt 629575  T
Q  160 ttgaaatgctc 170  Q
    |||||||||||    
T  629576 ttgaaatgctc 629586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 189837 - 189783
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaaga 64  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  189837 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaaga 189783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 717441 - 717387
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaaga 64  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  717441 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaaga 717387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 878548 - 878494
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaaga 64  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  878548 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaaga 878494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 924173 - 924099
Alignment:
Q  64 aagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaacatg 138  Q
    ||||||||||||||||||| |||||||||| ||||||||| ||| |||| ||||||||||| |||||||||||||    
T  924173 aagttaggaattgtagctttaactagaattacttttggagtatagaagcaattttgaaaagtcaaaccaaacatg 924099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 35164381 - 35164474
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    |||||||||||||| |||||||| | ||  ||||||||||||||||||  |||||||||||||||||||| ||||     |||||||||||||||||||    
T  35164381 tgtagaattgattcgaggaaagtcaaaaactaggaattgtagcttcaaggagaattgcttttggaggatagaagc-----tgaaaagccaaaccaaaca 35164474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 35802344 - 35802442
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||||||||  | ||| |||||  |||||||||||  | |||||||||||||||||| |||| ||||| ||||| |||||||||||    
T  35802344 tgtagaattgattctaggaaagccaaaagctaggatatgtagcttcaaggataattgcttttggaggatagaagcaatttttaaaagtcaaaccaaaca 35802442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 308915 - 308872
Alignment:
Q  171 cagaattgattctggctttgcaaaagccaaaccaaacagaggct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  308915 cagaattgattctggctttgcaaaagccaaaccaaacagaggct 308872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 8416760 - 8416662
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||| ||||  ||||||||||| ||||||||| ||  | |||||||||||||||||| || | ||| | |||||||||| ||||||    
T  8416760 tgtagaattgattctagaaaagctagaagttaggatttgtagctttaaggataattgcttttggaggatagaatcaattcttaaaagccaaatcaaaca 8416662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 45276403 - 45276501
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||| ||||  ||||| ||||| ||||||||| ||  | |||||||||||||||||| || | ||||| ||||| ||||| |||||    
T  45276403 tgtagaattgattctagaaaagctagaagctaggatttgtagctttaaggataattgcttttggaggatataatcaatttttaaaagtcaaacaaaaca 45276501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 3590169 - 3590107
Alignment:
Q  41 agaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggag 103  Q
    ||||||||||||||  || | | ||||||||||||||||||||||| ||||||| ||||||||    
T  3590169 agaattgattctagttaactcaaaagttaggaattgtagcttcaaccagaattgtttttggag 3590107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 36821679 - 36821725
Alignment:
Q  90 aattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    |||||||||||||||||| |||| ||| |||||||||||||||||||    
T  36821679 aattgcttttggaggatagaagcaattctgaaaagccaaaccaaaca 36821725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 214
Target Start/End: Original strand, 31012404 - 31012608
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31012404 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaa 31012503  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31012504 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 31012603  T
Q  210 aggct 214  Q
    |||||    
T  31012604 aggct 31012608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 25341452 - 25341650
Alignment:
Q  16 atggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25341452 atggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctat 25341551  T
Q  116 tttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacagaggct 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25341552 tttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacagaggct 25341650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 41064717 - 41064585
Alignment:
Q  28 gaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagcca 127  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| |   ||||||| |||||||||||| |||| ||| ||||||| ||    
T  41064717 gaattgagggtgtagaattgattctagaaaagtcagaagctaggaattgtagctttatggagaattgtttttggaggatagaagcaattatgaaaaggca 41064618  T
Q  128 aaccaaacatgtta-aatattgcagaattgctt 159  Q
    |||||||||| ||| ||| ||| ||||||||||    
T  41064617 aaccaaacatattagaatgttgtagaattgctt 41064585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 37371177 - 37371078
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaacat 137  Q
    ||||||||||||||||| ||||  ||||||||||| ||||||||| ||  | |||||||||||||||||| || | ||| | ||||||||||||||||||    
T  37371177 tgtagaattgattctagaaaagctagaagttaggatttgtagctttaaagataattgcttttggaggatagaaccaattcttaaaagccaaaccaaacat 37371078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 14999966 - 14999868
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||||||||  | || |||||||||||||||| ||  |||||| ||||||||||||| || | ||| | |||||||||||||||||    
T  14999966 tgtagaattgattctaggaaagccaaaaattaggaattgtagctttaaggagaattacttttggaggatagaatcaattctaaaaagccaaaccaaaca 14999868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 25970531 - 25970433
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    |||||||||||||||| |||||  | ||| ||||||||||||||| ||  |||||| ||||||||||||| |||| ||| | |||||||||||||||||    
T  25970531 tgtagaattgattctaagaaagccaaaagctaggaattgtagctttaaagagaattacttttggaggatagaagcaattcttaaaagccaaaccaaaca 25970433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 26826480 - 26826384
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaa 134  Q
    ||||||||||||| |||||||| || ||||||||||||||| ||| ||  |||||| ||||||||||||| |||  ||| | |||||||||||||||    
T  26826480 tgtagaattgattataggaaaggaaaaagttaggaattgtacctttaaggagaattacttttggaggatagaagtaattcttaaaagccaaaccaaa 26826384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 39857172 - 39857075
Alignment:
Q  41 agaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaacatg 138  Q
    ||||||||||||||  || | | ||| || |||||||||||||| | |||||| ||||||||||||| |||| ||| ||||||| |||||||||||||    
T  39857172 agaattgattctagttaactcaaaagctatgaattgtagcttcatccagaattacttttggaggatagaagcaattctgaaaagtcaaaccaaacatg 39857075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 30825288 - 30825190
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||| ||||||  | ||| ||||||||||| ||| ||  ||||||| |||||||||||| |||| ||| | ||||| |||||||||||    
T  30825288 tgtagaattgattcttggaaagccaaaagctaggaattgtaactttaaggagaattgtttttggaggatagaagcaattctaaaaaggcaaaccaaaca 30825190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 43664814 - 43664912
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||||||||| | | ||||| ||||||||||| ||  | |||||||||||||||||| ||   ||| |||||||| ||| ||||||    
T  43664814 tgtagaattgattctaggaaagtcaaaggttagaaattgtagctttaagaaaaattgcttttggaggatagaatgaattctgaaaagctaaaacaaaca 43664912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 25472765 - 25472863
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||| |||   ||||| || || ||||||||||||  | |||||||||||||||||| || | ||| | ||||| |||||||||||    
T  25472765 tgtagaattgattctagaaaatgtagaagctatgatttgtagcttcaaggataattgcttttggaggatagaatcaattcttaaaagtcaaaccaaaca 25472863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 12909327 - 12909229
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||  ||||  | ||| ||||| |||||||||||   | |||||||||||||||||| || | ||| | ||||| |||||||||||    
T  12909327 tgtagaattgattctacaaaagccaaaagctaggatttgtagcttcatggataattgcttttggaggatagaatcaattcttaaaagtcaaaccaaaca 12909229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 32450846 - 32450784
Alignment:
Q  41 agaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggag 103  Q
    ||||||||||||||  || | | ||||||| ||||||||||||||| | ||||||||||||||    
T  32450846 agaattgattctagttaactcaaaagttagaaattgtagcttcaaccaaaattgcttttggag 32450784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 29542443 - 29542646
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29542443 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaa 29542542  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29542543 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 29542642  T
Q  210 aggc 213  Q
    ||||    
T  29542643 aggc 29542646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 42663560 - 42663353
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42663560 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaa 42663461  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42663460 agctattttgaaaagtcaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 42663361  T
Q  210 aggcttaa 217  Q
    ||||||||    
T  42663360 aggcttaa 42663353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 214
Target Start/End: Original strand, 3260840 - 3261044
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3260840 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaa 3260939  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3260940 agctattttgaaaagtcaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 3261039  T
Q  210 aggct 214  Q
    |||||    
T  3261040 aggct 3261044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 33115160 - 33114954
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33115160 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaa 33115061  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33115060 aactattttaaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 33114961  T
Q  210 aggctta 216  Q
    |||||||    
T  33114960 aggctta 33114954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 218
Target Start/End: Complemental strand, 14083017 - 14082809
Alignment:
Q  10 gcagagatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14083017 gcagggatggaattaatagaattgagggtgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaa 14082918  T
Q  110 agctattttgaaaagccaaaccaaacatgttaaatattgcagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 209  Q
    ||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14082917 agctattttaaaaagtcaaaccaaacatgttaaatattgtagaattgcttttgaaatgctccagaattgattctggctttgcaaaagccaaaccaaacag 14082818  T
Q  210 aggcttaat 218  Q
    |||| ||||    
T  14082817 aggcataat 14082809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 2526379 - 2526282
Alignment:
Q  41 agaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaacatg 138  Q
    ||||||||||||||  || | | ||| ||||||||||||||||| | |||||||||||||| || || |||| ||| |||||||||||||||||||||    
T  2526379 agaattgattctagttaactcaaaagctaggaattgtagcttcatccagaattgcttttggggggtagaagcaattctgaaaagccaaaccaaacatg 2526282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 53697 - 53765
Alignment:
Q  68 taggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||||| | |||||||||||||||||| |||| ||| ||||||| |||||||||||    
T  53697 taggaattgtagcttcaaccataattgcttttggaggatagaagcaattatgaaaaggcaaaccaaaca 53765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 134
Target Start/End: Original strand, 8958502 - 8958599
Alignment:
Q  37 gtgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaa 134  Q
    |||||||||||||||||||||||  | || |||||||||||||||| ||  ||||||| |||| ||||||| || | ||| ||||||| |||||||||    
T  8958502 gtgtagaattgattctaggaaagccaaaaattaggaattgtagctttaaggagaattgtttttagaggatagaaacaattctgaaaagtcaaaccaaa 8958599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 37066560 - 37066657
Alignment:
Q  39 gtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    |||||||||||||||| ||||  ||||||||||| ||||||||| ||  | |||||||||| ||||||| || | ||| | |||||||||||||||||    
T  37066560 gtagaattgattctagaaaagctagaagttaggatttgtagctttaatgataattgcttttagaggatataaccaattcttaaaagccaaaccaaaca 37066657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 33229302 - 33229204
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||  ||||  | ||||||||| |||||||||||   | |||||||||||||||||| || | ||| | |||||||||||||||||    
T  33229302 tgtagaattgattctacaaaagccaaaagttaggatttgtagcttcatggataattgcttttggaggatagaatcaattcttaaaagccaaaccaaaca 33229204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 39236896 - 39236994
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||  ||||| | ||||||||| |||||||||||   | ||||| |||||||||||| || | ||| | |||||||||||||||||    
T  39236896 tgtagaattgattctacaaaagtcaaaagttaggatttgtagcttcatggataattgtttttggaggatagaatcaattcttaaaagccaaaccaaaca 39236994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 10900227 - 10900165
Alignment:
Q  41 agaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggag 103  Q
    ||||||||||||||  || | | ||||||||||||||||||||| | ||||||||||||||||    
T  10900227 agaattgattctagctaactcaaaagttaggaattgtagcttcatccagaattgcttttggag 10900165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 19375409 - 19375471
Alignment:
Q  41 agaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggag 103  Q
    ||||||||||||||  || | | ||||||||||||||||||||| | ||||||||||||||||    
T  19375409 agaattgattctagctaactcaaaagttaggaattgtagcttcatccagaattgcttttggag 19375471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 27739351 - 27739449
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||  ||||  | ||| ||||| |||||||||||   | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  27739351 tgtagaattgattctacaaaagccaaaagctaggatttgtagcttcacggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 27739449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 41040137 - 41040234
Alignment:
Q  39 gtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    |||||||||||||| | ||||  | ||| ||||| ||||||||||||  | ||||  |||||||||||| |||| ||| | |||||||||||||||||    
T  41040137 gtagaattgattcttgaaaagccaaaagctaggatttgtagcttcaaggataattatttttggaggatagaagcaattcttaaaagccaaaccaaaca 41040234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 103
Target Start/End: Original strand, 33387722 - 33387761
Alignment:
Q  64 aagttaggaattgtagcttcaactagaattgcttttggag 103  Q
    ||||||||||||||||||||||| ||||||| ||||||||    
T  33387722 aagttaggaattgtagcttcaaccagaattgtttttggag 33387761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 7073275 - 7073373
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||  ||||  | ||| ||||| ||||||||||||  | |||| |||||||   ||| |||| ||||| |||||||||||||||||    
T  7073275 tgtagaattgattctacaaaagccaaaagctaggatttgtagcttcaaggataattacttttgggaaatagaagcaatttttaaaagccaaaccaaaca 7073373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 21022632 - 21022730
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||  ||||  | ||| ||||| |||||||||||   | ||||||||| |||||||| || | ||| | |||||||||||||||||    
T  21022632 tgtagaattgattctacaaaagccaaaagctaggatttgtagcttcatggataattgctttaggaggatagaatcaattcttaaaagccaaaccaaaca 21022730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 41742222 - 41742320
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    ||||||||||||||||| ||||  | ||||||||| || |||||| ||  | |||||||||||||||||| || | ||| | |||||  ||||||||||    
T  41742222 tgtagaattgattctagaaaagctaaaagttaggatttttagctttaaggacaattgcttttggaggatagaatcaattcttaaaagttaaaccaaaca 41742320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 16884 - 16815
Alignment:
Q  67 ttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 136  Q
    |||||||||||||||| || ||||||||||||||||||||| || | ||| | |||||||||||||||||    
T  16884 ttaggaattgtagctttaattagaattgcttttggaggatagaatcaattctaaaaagccaaaccaaaca 16815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 91634 - 91535
Alignment:
Q  38 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaat--tgcttttggaggataaaagctattttgaaaagccaaaccaaac 135  Q
    |||||||||  ||||| |||||  | ||||||||||||||||||| || ||||||  ||||||||||||||| || | ||| | ||||||||||||||||    
T  91634 tgtagaatttgttctatgaaagccaaaagttaggaattgtagctttaagtagaatattgcttttggaggatagaatcaattctaaaaagccaaaccaaac 91535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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