View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20521_high_18 (Length: 256)
Name: NF20521_high_18
Description: NF20521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20521_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 48879774 - 48879535
Alignment:
| Q |
1 |
cgattactggttagtgaggaactcatggggttcatcatggggtgaaaatggctacattaagatggagagaaatttgttaacaaaagaaactggcaagtgt |
100 |
Q |
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| T |
48879774 |
cgattactggttagtgaggaactcatggggttcatcatggggtgaaaatggctacattaagatggagagaaatttgttaacaaaagaaactggcaagtgt |
48879675 |
T |
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| Q |
101 |
ggaattgcaatggaggcatcctatcctatcaagaagggtcagaacccaccaaatcctggtccttcacctccatcacctgttcagccttcaactgtatgtg |
200 |
Q |
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| T |
48879674 |
ggaattgcaatggaggcatcatatcctatcaagaagggtcagaacccaccaaatcctggtccttcacctccatcacctgttcagccttcaactgtatgtg |
48879575 |
T |
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| Q |
201 |
atgaatactactcttgctcagctggaaccacatgttgttg |
240 |
Q |
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| T |
48879574 |
atgaatactactcttgctcagctggaaccacatgttgttg |
48879535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 24743655 - 24743695
Alignment:
| Q |
104 |
attgcaatggaggcatcctatcctatcaagaagggtcagaa |
144 |
Q |
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| T |
24743655 |
attgcaatggagccatcatatcctatcaagaatggtcagaa |
24743695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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