View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20521_high_2 (Length: 613)

Name: NF20521_high_2
Description: NF20521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20521_high_2
NF20521_high_2
[»] chr5 (11 HSPs)
chr5 (18-603)||(14409878-14410464)
chr5 (20-129)||(17854424-17854533)
chr5 (199-244)||(14410776-14410821)
chr5 (189-243)||(25868108-25868163)
chr5 (190-236)||(25994943-25994990)
chr5 (186-236)||(32804884-32804935)
chr5 (259-338)||(36347916-36347995)
chr5 (187-236)||(25994553-25994603)
chr5 (259-339)||(1080865-1080945)
chr5 (205-244)||(6408640-6408680)
chr5 (189-236)||(25868503-25868551)
[»] chr8 (11 HSPs)
chr8 (190-244)||(7130131-7130186)
chr8 (259-339)||(42183575-42183655)
chr8 (187-243)||(39872179-39872236)
chr8 (190-242)||(45156018-45156071)
chr8 (199-240)||(45156379-45156420)
chr8 (189-243)||(7130615-7130670)
chr8 (259-333)||(1218697-1218771)
chr8 (203-245)||(1797739-1797781)
chr8 (205-235)||(35348676-35348706)
chr8 (282-339)||(43532495-43532552)
chr8 (188-243)||(42432041-42432097)
[»] chr2 (6 HSPs)
chr2 (190-240)||(33710897-33710948)
chr2 (259-340)||(37058126-37058207)
chr2 (191-244)||(3816311-3816365)
chr2 (199-244)||(42882549-42882594)
chr2 (188-245)||(19004807-19004864)
chr2 (258-339)||(29110314-29110395)
[»] chr1 (13 HSPs)
chr1 (190-301)||(11434689-11434801)
chr1 (34-74)||(32713385-32713425)
chr1 (108-166)||(32713325-32713384)
chr1 (264-339)||(45886864-45886939)
chr1 (199-245)||(42294510-42294556)
chr1 (20-55)||(32713425-32713460)
chr1 (264-319)||(44528023-44528078)
chr1 (259-320)||(44527886-44527947)
chr1 (259-339)||(11435316-11435396)
chr1 (199-227)||(14613650-14613678)
chr1 (305-341)||(21485670-21485706)
chr1 (190-229)||(32713217-32713257)
chr1 (259-339)||(46182484-46182564)
[»] chr7 (8 HSPs)
chr7 (258-339)||(39294913-39294994)
chr7 (92-129)||(48149859-48149896)
chr7 (263-302)||(4034136-4034175)
chr7 (204-237)||(30665198-30665231)
chr7 (259-336)||(30859755-30859832)
chr7 (189-245)||(42629200-42629256)
chr7 (199-243)||(16488188-16488232)
chr7 (199-243)||(30859849-30859893)
[»] chr4 (11 HSPs)
chr4 (259-340)||(20779925-20780006)
chr4 (190-339)||(40361677-40361827)
chr4 (282-339)||(18845340-18845397)
chr4 (199-244)||(19487518-19487563)
chr4 (259-339)||(51721039-51721119)
chr4 (258-333)||(42040398-42040472)
chr4 (282-339)||(18846214-18846271)
chr4 (199-236)||(53260223-53260260)
chr4 (205-237)||(4675040-4675072)
chr4 (190-244)||(32304776-32304832)
chr4 (259-339)||(52031632-52031711)
[»] chr3 (5 HSPs)
chr3 (264-341)||(52562606-52562683)
chr3 (259-319)||(52562787-52562847)
chr3 (189-244)||(36754119-36754175)
chr3 (207-245)||(45003376-45003414)
chr3 (284-340)||(36182757-36182813)
[»] scaffold1107 (1 HSPs)
scaffold1107 (190-245)||(1921-1977)
[»] chr6 (2 HSPs)
chr6 (190-236)||(32879699-32879746)
chr6 (259-339)||(5741522-5741602)


Alignment Details
Target: chr5 (Bit Score: 478; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 18 - 603
Target Start/End: Complemental strand, 14410464 - 14409878
Alignment:
Q  18 actaaataactcactcaactacctcaccaatttcattatttttgttcaaccaattgtctctatctacataattttagtagtagtaaaaggaacaaaatca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14410464 actaaataactcactcaactacctcaccaatttcattatttttgttcaaccaattgtctctatctacataattttagtagtagtaaaaggaacaaaatca 14410365  T
Q  118 gtgtcttaacataacacttgcctgcccctcacttgataatagaattgttttgagaatgaaaaaacaaaatctgcgtgagtta-ctcacgcagcgtgactt 216  Q
    ||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||    
T  14410364 gtgtcttaacataacacatgccttctcctcacttgataatagaattgttttgagaatgaaaaaacaaaacttgcgtgagttaactcacgcagcgtgactt 14410265  T
Q  217 aagtcacgcatgtataaaaattaagtcatannnnnnnacatgtgcgctagttaactagcgcaggagtattttgaacatggctgcaaagcgcgagtgtttt 316  Q
    |||||||||||||||||||| ||||||| |       |||  |||| | | |||||||||||||||||||||   |||||||||| ||||| ||||||||    
T  14410264 aagtcacgcatgtataaaaactaagtcacatttttttacacttgcgttggctaactagcgcaggagtattttaggcatggctgcagagcgcaagtgtttt 14410165  T
Q  317 gtgcagagtgaagagcagaattcattttcaatttgtcaaattgaaataaaaatatattttagggtttatcaatgaacaacattgtctaaggcccaatcta 416  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14410164 gtgcagagtgaagagcagaatttattttcaatttgtcaaattgaaataaaaatatattttagggtttatcaatgaacaacattgtctaaggcccaatcta 14410065  T
Q  417 caattacatagacacattctcattctcagttctcacaccctgtttatataatatgaacaaacacaacaaatccaccaacatttgaaagtctccttttcat 516  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14410064 caattacatagacacattctcattctcagttctcacaccctatttatataatatgaacaaacacaacaaatccaccaacattcgaaagtctccttttcat 14409965  T
Q  517 catccttactcgttttcaacaagaaatgaatataaacatgaacaaacaactcaacctccttatcattctctttatcctcttttcatc 603  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14409964 catccttactcgttttcaacaagaaatgaatataaacatgaacaaacaactcaacctccttatcattctctttatcctcttttcatc 14409878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 17854533 - 17854424
Alignment:
Q  20 taaataactcactcaactacctcaccaatttcattatttttgttcaaccaattgtctctatctacataattttagtagtagtaaaaggaacaaaatcagt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17854533 taaataactcactcaactacctcaccaatttcattatttttgttcaaccaattgtctctatctacagaattttagtagtagtaaaaggaacaaaatcagt 17854434  T
Q  120 gtcttaacat 129  Q
    ||||||||||    
T  17854433 gtcttaacat 17854424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 14410776 - 14410821
Alignment:
Q  199 actcacgcagcgtgacttaagtcacgcatgtataaaaattaagtca 244  Q
    ||||||||||||||||||||||||| ||||| |||||| |||||||    
T  14410776 actcacgcagcgtgacttaagtcacacatgtgtaaaaactaagtca 14410821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 25868163 - 25868108
Alignment:
Q  189 tgcgtgagtta-ctcacgcagcgtgacttaagtcacgcatgtataaaaattaagtc 243  Q
    ||||||||||| |||| ||||||||||||||||||| ||||| |||||| ||||||    
T  25868163 tgcgtgagttaactcatgcagcgtgacttaagtcacacatgtgtaaaaactaagtc 25868108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 25994943 - 25994990
Alignment:
Q  190 gcgtgagtta-ctcacgcagcgtgacttaagtcacgcatgtataaaaa 236  Q
    |||||||||| |||| ||||||||||||||||||||||||| ||||||    
T  25994943 gcgtgagttaactcatgcagcgtgacttaagtcacgcatgtgtaaaaa 25994990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 32804884 - 32804935
Alignment:
Q  186 atctgcgtgagtta-ctcacgcagcgtgacttaagtcacgcatgtataaaaa 236  Q
    |||||||||||||| ||||||| |||||||||||||||| ||||| ||||||    
T  32804884 atctgcgtgagttaactcacgcggcgtgacttaagtcacacatgtgtaaaaa 32804935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 338
Target Start/End: Original strand, 36347916 - 36347995
Alignment:
Q  259 tgcgctagttaactagcgcaggagtattttgaacatggctgcaaagcgcgagtgttttgtgcagagtgaagagcagaatt 338  Q
    |||| |||||||||||| ||||||||||||| ||| || ||||    ||||||||||||||| | ||||||||| |||||    
T  36347916 tgcgttagttaactagcacaggagtattttggacaaggttgcaggatgcgagtgttttgtgctgggtgaagagccgaatt 36347995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 25994603 - 25994553
Alignment:
Q  187 tctgcgtgagtta-ctcacgcagcgtgacttaagtcacgcatgtataaaaa 236  Q
    ||||||||||||| |||| || |||||||||||||||||||||| ||||||    
T  25994603 tctgcgtgagttaactcaggcggcgtgacttaagtcacgcatgtgtaaaaa 25994553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 259 - 339
Target Start/End: Complemental strand, 1080945 - 1080865
Alignment:
Q  259 tgcgctagttaactagcgcaggagtattttgaacatggctgcaaagcgcgagtgttttgtgcagagtgaagagcagaattc 339  Q
    |||||||||||||||||||||  |||||||  |||||||| ||| | ||||| |   ||| | ||||||||||||||||||    
T  1080945 tgcgctagttaactagcgcagaggtattttagacatggctacaaggtgcgagcgaaatgtactgagtgaagagcagaattc 1080865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 244
Target Start/End: Complemental strand, 6408680 - 6408640
Alignment:
Q  205 gcagcgtgacttaagtcacgcatgtat-aaaaattaagtca 244  Q
    ||||||||||||||||||||||||| | |||||||||||||    
T  6408680 gcagcgtgacttaagtcacgcatgtgtaaaaaattaagtca 6408640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 25868503 - 25868551
Alignment:
Q  189 tgcgtgagtta-ctcacgcagcgtgacttaagtcacgcatgtataaaaa 236  Q
    ||||||||||| || | ||||||||||||||||||||||||| ||||||    
T  25868503 tgcgtgagttaacttatgcagcgtgacttaagtcacgcatgtgtaaaaa 25868551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 7130186 - 7130131
Alignment:
Q  190 gcgtgagtta-ctcacgcagcgtgacttaagtcacgcatgtataaaaattaagtca 244  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  7130186 gcgtgagttaactcacgcagcgtgacttaagtcacgcatgtataaaaactaagtca 7130131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 339
Target Start/End: Original strand, 42183575 - 42183655
Alignment:
Q  259 tgcgctagttaactagcgcaggagtattttgaacatggctgcaaagcgcgagtgttttgtgcagagtgaagagcagaattc 339  Q
    |||||||||||||||||||| |   |||||| |||||||||||  | ||||||||||||||| | |||||||||| |||||    
T  42183575 tgcgctagttaactagcgcatggacattttggacatggctgcagggtgcgagtgttttgtgctgggtgaagagcaaaattc 42183655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 39872179 - 39872236
Alignment:
Q  187 tctgcgtgagtta-ctcacgcagcgtgacttaagtcacgcatgtataaaaattaagtc 243  Q
    |||| |||||||| |||| ||||||||||||||||||| ||||| |||||||||||||    
T  39872179 tctgtgtgagttaactcatgcagcgtgacttaagtcacacatgtgtaaaaattaagtc 39872236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 45156071 - 45156018
Alignment:
Q  190 gcgtgagtta-ctcacgcagcgtgacttaagtcacgcatgtataaaaattaagt 242  Q
    |||||||||| |||| ||||||||| ||||||||||||||| ||||||||||||    
T  45156071 gcgtgagttaactcatgcagcgtgatttaagtcacgcatgtgtaaaaattaagt 45156018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 45156379 - 45156420
Alignment:
Q  199 actcacgcagcgtgacttaagtcacgcatgtataaaaattaa 240  Q
    ||||| ||||||||||||||||||||||||| ||||||||||    
T  45156379 actcaagcagcgtgacttaagtcacgcatgtgtaaaaattaa 45156420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 7130615 - 7130670
Alignment:
Q  189 tgcgtgagtta-ctcacgcagcgtgacttaagtcacgcatgtataaaaattaagtc 243  Q
    ||||||||||| |||| ||||||||||||||||||||||||  |||||| ||||||    
T  7130615 tgcgtgagttaactcatgcagcgtgacttaagtcacgcatgcgtaaaaactaagtc 7130670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 259 - 333
Target Start/End: Original strand, 1218697 - 1218771
Alignment:
Q  259 tgcgctagttaactagcgcaggagtattttgaacatggctgcaaagcgcgagtgttttgtgcagagtgaagagca 333  Q
    ||||||||||||||||||||   |||||||||  ||||||| || | |||||||| |||||| | ||||||||||    
T  1218697 tgcgctagttaactagcgcataggtattttgagtatggctgtaaggtgcgagtgtattgtgctgggtgaagagca 1218771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 1797781 - 1797739
Alignment:
Q  203 acgcagcgtgacttaagtcacgcatgtataaaaattaagtcat 245  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||    
T  1797781 acgcagcgtgacttaagtcacacatgtgtaaaaattatgtcat 1797739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 235
Target Start/End: Complemental strand, 35348706 - 35348676
Alignment:
Q  205 gcagcgtgacttaagtcacgcatgtataaaa 235  Q
    |||||||||||||||||||||||||||||||    
T  35348706 gcagcgtgacttaagtcacgcatgtataaaa 35348676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 339
Target Start/End: Original strand, 43532495 - 43532552
Alignment:
Q  282 gtattttgaacatggctgcaaagcgcgagtgttttgtgcagagtgaagagcagaattc 339  Q
    |||||||  ||| |||||||  ||||||||||||||||| | ||||||||||||||||    
T  43532495 gtatttttgacaaggctgcagggcgcgagtgttttgtgctgggtgaagagcagaattc 43532552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 42432041 - 42432097
Alignment:
Q  188 ctgcgtgagtta-ctcacgcagcgtgacttaagtcacgcatgtataaaaattaagtc 243  Q
    |||||||||||| |||| | |||||||||||| |||||||| | |||||||||||||    
T  42432041 ctgcgtgagttaactcatgtagcgtgacttaaatcacgcatatgtaaaaattaagtc 42432097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 33710948 - 33710897
Alignment:
Q  190 gcgtgagtta-ctcacgcagcgtgacttaagtcacgcatgtataaaaattaa 240  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  33710948 gcgtgagttaactcacgcagcgtgacttaagtcacgcatgtgtaaaaattaa 33710897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 259 - 340
Target Start/End: Original strand, 37058126 - 37058207
Alignment:
Q  259 tgcgctagttaactagcgcaggagtattttgaacatggctgcaaagcgcgagtgttttgtgcagagtgaagagcagaattca 340  Q
    |||||||||||| ||||||||| | ||||||  ||||||||||  | ||||||||||||||| | |||||||||| ||||||    
T  37058126 tgcgctagttaattagcgcaggggcattttgggcatggctgcagggtgcgagtgttttgtgctgggtgaagagcaaaattca 37058207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 3816311 - 3816365
Alignment:
Q  191 cgtgagtta-ctcacgcagcgtgacttaagtcacgcatgtataaaaattaagtca 244  Q
    ||||||||| |||||||||||||||||||||||| ||| | ||||||||||||||    
T  3816311 cgtgagttaactcacgcagcgtgacttaagtcacacatatgtaaaaattaagtca 3816365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 42882594 - 42882549
Alignment:
Q  199 actcacgcagcgtgacttaagtcacgcatgtataaaaattaagtca 244  Q
    |||||| |||||||||||||||||||||||| |||||| |||||||    
T  42882594 actcacacagcgtgacttaagtcacgcatgtgtaaaaactaagtca 42882549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 19004864 - 19004807
Alignment:
Q  188 ctgcgtgagtta-ctcacgcagcgtgacttaagtcacgcatgtataaaaattaagtcat 245  Q
    |||||||||||| |||| || |||||||||||||||||||||| | |||||||||||||    
T  19004864 ctgcgtgagttaactcatgcggcgtgacttaagtcacgcatgtgt-aaaattaagtcat 19004807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 339
Target Start/End: Complemental strand, 29110395 - 29110314
Alignment:
Q  258 gtgcgctagttaactagcgcaggagtattttgaacatggctgcaaagcgcgagtgttttgtgcagagtgaagagcagaattc 339  Q
    ||||||||||||||||||||||| | |||||  | ||| |||||  ||| || ||| |||||| | ||||||||||||||||    
T  29110395 gtgcgctagttaactagcgcaggtgcattttcgaaatgcctgcagggcgtgaatgtcttgtgctgggtgaagagcagaattc 29110314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 190 - 301
Target Start/End: Complemental strand, 11434801 - 11434689
Alignment:
Q  190 gcgtgagtta-ctcacgcagcgtgacttaagtcacgcatgtataaaaattaagtcatannnnnnnacatgtgcgctagttaactagcgcaggagtatttt 288  Q
    |||||||||| ||||||||| ||||||||||||| |||||| |||||| |||||||         |||  |||| |||||||||||||||||||||||||    
T  11434801 gcgtgagttaactcacgcagtgtgacttaagtcaggcatgtgtaaaaactaagtcaattttttttacacttgcgttagttaactagcgcaggagtatttt 11434702  T
Q  289 gaacatggctgca 301  Q
    |  ||||||||||    
T  11434701 ggtcatggctgca 11434689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 32713425 - 32713385
Alignment:
Q  34 aactacctcaccaatttcattatttttgttcaaccaattgt 74  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  32713425 aactacgtcaccaatttcattatttttgttcaaccaattgt 32713385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 32713384 - 32713325
Alignment:
Q  108 aacaaaatcagtgtcttaacataacacttgcctg-cccctcacttgataatagaattgtt 166  Q
    ||||||||||||||||||||||||||| ||| || || ||||||||||||||||| ||||    
T  32713384 aacaaaatcagtgtcttaacataacacatgcatgacctctcacttgataatagaactgtt 32713325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 264 - 339
Target Start/End: Complemental strand, 45886939 - 45886864
Alignment:
Q  264 tagttaactagcgcaggagtattttgaacatggctgcaaagcgcgagtgttttgtgcagagtgaagagcagaattc 339  Q
    ||||||||||||||||| |||||||  | ||| |||||  ||||||||||||||||| | |||||||||| |||||    
T  45886939 tagttaactagcgcaggggtattttcgaaatgtctgcagggcgcgagtgttttgtgctgggtgaagagcaaaattc 45886864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 42294510 - 42294556
Alignment:
Q  199 actcacgcagcgtgacttaagtcacgcatgtataaaaattaagtcat 245  Q
    ||||||||||||||||||||||||| ||||| |||||| ||||||||    
T  42294510 actcacgcagcgtgacttaagtcacacatgtgtaaaaactaagtcat 42294556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 32713460 - 32713425
Alignment:
Q  20 taaataactcactcaactacctcaccaatttcatta 55  Q
    ||||||||||||||||||||||||| ||||||||||    
T  32713460 taaataactcactcaactacctcactaatttcatta 32713425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 319
Target Start/End: Original strand, 44528023 - 44528078
Alignment:
Q  264 tagttaactagcgcaggagtattttgaacatggctgcaaagcgcgagtgttttgtg 319  Q
    |||||||||| || |||||||||||| |||||||||||  | ||||||||||||||    
T  44528023 tagttaactaacgtaggagtattttggacatggctgcagggtgcgagtgttttgtg 44528078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 44527947 - 44527886
Alignment:
Q  259 tgcgctagttaactagcgcaggagtattttgaacatggctgcaaagcgcgagtgttttgtgc 320  Q
    |||| |||||||||| ||||  |||||||| | ||||||||||  |||||||||||||||||    
T  44527947 tgcgttagttaactaacgcaaaagtattttaagcatggctgcagggcgcgagtgttttgtgc 44527886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 259 - 339
Target Start/End: Original strand, 11435316 - 11435396
Alignment:
Q  259 tgcgctagttaactagcgcaggagtattttgaacatggctgcaaagcgcgagtgttttgtgcagagtgaagagcagaattc 339  Q
    |||| ||||||||||||| | ||||||||||  ||||| ||||  |||||||||    |||||| ||||||||||||||||    
T  11435316 tgcgttagttaactagcgtatgagtattttggtcatggttgcagggcgcgagtgaaaagtgcagggtgaagagcagaattc 11435396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 14613678 - 14613650
Alignment:
Q  199 actcacgcagcgtgacttaagtcacgcat 227  Q
    |||||||||||||||||||||||||||||    
T  14613678 actcacgcagcgtgacttaagtcacgcat 14613650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 305 - 341
Target Start/End: Original strand, 21485670 - 21485706
Alignment:
Q  305 cgcgagtgttttgtgcagagtgaagagcagaattcat 341  Q
    |||||||||||||||| | ||||||||||||||||||    
T  21485670 cgcgagtgttttgtgctgggtgaagagcagaattcat 21485706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 32713257 - 32713217
Alignment:
Q  190 gcgtgagtta-ctcacgcagcgtgacttaagtcacgcatgt 229  Q
    |||||||||| ||||||||||||||||||||||||| ||||    
T  32713257 gcgtgagttaactcacgcagcgtgacttaagtcacgtatgt 32713217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 259 - 339
Target Start/End: Original strand, 46182484 - 46182564
Alignment:
Q  259 tgcgctagttaactagcgcaggagtattttgaacatggctgcaaagcgcgagtgttttgtgcagagtgaagagcagaattc 339  Q
    |||||| |||||||||| || | ||||||| | ||||||||||| |||||||    || | ||||||||||||||||||||    
T  46182484 tgcgcttgttaactagcacaagggtatttttagcatggctgcaaggcgcgagcaaattatacagagtgaagagcagaattc 46182564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 258 - 339
Target Start/End: Original strand, 39294913 - 39294994
Alignment:
Q  258 gtgcgctagttaactagcgcaggagtattttgaacatggctgcaaagcgcgagtgttttgtgcagagtgaagagcagaattc 339  Q
    ||||||||||||||||||||||| | ||||||  ||||||||||  | ||||||||||||||| | ||| |||||| |||||    
T  39294913 gtgcgctagttaactagcgcaggggcattttgggcatggctgcagggtgcgagtgttttgtgctgggtggagagcaaaattc 39294994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 48149896 - 48149859
Alignment:
Q  92 tagtagtagtaaaaggaacaaaatcagtgtcttaacat 129  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48149896 tagtagtagtaaaaggaacaaaatcagtgtcttaacat 48149859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 302
Target Start/End: Complemental strand, 4034175 - 4034136
Alignment:
Q  263 ctagttaactagcgcaggagtattttgaacatggctgcaa 302  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  4034175 ctagttaactagcgtaggggtattttgaacatggctgcaa 4034136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 30665231 - 30665198
Alignment:
Q  204 cgcagcgtgacttaagtcacgcatgtataaaaat 237  Q
    |||||||||||||||||||||||||| |||||||    
T  30665231 cgcagcgtgacttaagtcacgcatgtgtaaaaat 30665198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 336
Target Start/End: Complemental strand, 30859832 - 30859755
Alignment:
Q  259 tgcgctagttaactagcgcaggagtattttgaacatggctgcaaagcgcgagtgttttgtgcagagtgaagagcagaa 336  Q
    |||| ||||||||| ||||||| | |||||    |||||||||  ||||||||||||||||||| | |||||||||||    
T  30859832 tgcgttagttaacttgcgcaggggcatttttggaatggctgcagggcgcgagtgttttgtgcagggggaagagcagaa 30859755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 42629200 - 42629256
Alignment:
Q  189 tgcgtgagtta-ctcacgcagcgtgacttaagtcacgcatgtataaaaattaagtcat 245  Q
    ||||||||||| |||| |||||||||||||||||| |||||| | |||||||||||||    
T  42629200 tgcgtgagttaactcatgcagcgtgacttaagtcatgcatgtgt-aaaattaagtcat 42629256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 16488188 - 16488232
Alignment:
Q  199 actcacgcagcgtgacttaagtcacgcatgtataaaaattaagtc 243  Q
    ||||| ||||||||||||||||||| ||||| |||||| ||||||    
T  16488188 actcatgcagcgtgacttaagtcacacatgtgtaaaaactaagtc 16488232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 30859893 - 30859849
Alignment:
Q  199 actcacgcagcgtgacttaagtcacgcatgtataaaaattaagtc 243  Q
    |||||||| ||||||||||||||| |||||| |||||| ||||||    
T  30859893 actcacgcggcgtgacttaagtcatgcatgtgtaaaaactaagtc 30859849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 259 - 340
Target Start/End: Original strand, 20779925 - 20780006
Alignment:
Q  259 tgcgctagttaactagcgcaggagtattttgaacatggctgcaaagcgcgagtgttttgtgcagagtgaagagcagaattca 340  Q
    |||||||||||||||||||| | | ||||| |  ||| |||||  ||||||||||||||||| | |||||||||||||||||    
T  20779925 tgcgctagttaactagcgcatgggcattttcagaatgtctgcagggcgcgagtgttttgtgctgggtgaagagcagaattca 20780006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 190 - 339
Target Start/End: Original strand, 40361677 - 40361827
Alignment:
Q  190 gcgtgagtta-ctcacgcagcgtgacttaagtcacgcatgtataaaaattaagtcatannnnnnnacatgtgcgctagttaactagcgcaggagtatttt 288  Q
    |||||||||| ||||||  |||||||||||||||||||||| |||||||||||||          ||| || ||||||||||||||||||||  ||||||    
T  40361677 gcgtgagttaactcacgtggcgtgacttaagtcacgcatgtgtaaaaattaagtcccgtttttttacacgtacgctagttaactagcgcagggatatttt 40361776  T
Q  289 gaacatggctgcaaagcgcgagtgttttgtgcagagtgaagagcagaattc 339  Q
    |  ||||||||||  ||||||| |    |||||| |||||||| |||||||    
T  40361777 ggtcatggctgcagggcgcgagcgaaaagtgcagggtgaagagaagaattc 40361827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 282 - 339
Target Start/End: Complemental strand, 18845397 - 18845340
Alignment:
Q  282 gtattttgaacatggctgcaaagcgcgagtgttttgtgcagagtgaagagcagaattc 339  Q
    ||||||||  || |||||||| ||||||||||||||||| | ||||||||||||||||    
T  18845397 gtattttgggcacggctgcaaggcgcgagtgttttgtgctgggtgaagagcagaattc 18845340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 19487563 - 19487518
Alignment:
Q  199 actcacgcagcgtgacttaagtcacgcatgtataaaaattaagtca 244  Q
    ||||||||||||||| ||||||||||||||| |||||| |||||||    
T  19487563 actcacgcagcgtgagttaagtcacgcatgtgtaaaaactaagtca 19487518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 259 - 339
Target Start/End: Complemental strand, 51721119 - 51721039
Alignment:
Q  259 tgcgctagttaactagcgcaggagtattttgaacatggctgcaaagcgcgagtgttttgtgcagagtgaagagcagaattc 339  Q
    |||| ||||||||||  |||||   ||||||| ||||||||||  |||| |||||||||||| | ||||||||||||||||    
T  51721119 tgcgttagttaactaatgcagggacattttgagcatggctgcatggcgcaagtgttttgtgctgggtgaagagcagaattc 51721039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 333
Target Start/End: Complemental strand, 42040472 - 42040398
Alignment:
Q  258 gtgcgctagttaactagcgcaggagtattttgaacatggctgcaaagcgcgagtgttttgtgcagagtgaagagca 333  Q
    ||||| |||||||||| |||||| |||||||   |||| |||||  ||||||||||||||||||||| ||||||||    
T  42040472 gtgcgttagttaactaacgcaggggtattttaggcatg-ctgcagggcgcgagtgttttgtgcagagggaagagca 42040398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 339
Target Start/End: Original strand, 18846214 - 18846271
Alignment:
Q  282 gtattttgaacatggctgcaaagcgcgagtgttttgtgcagagtgaagagcagaattc 339  Q
    ||||||||  || |||||||  ||||||||||||||||| | ||||||||||||||||    
T  18846214 gtattttgggcacggctgcagggcgcgagtgttttgtgctgggtgaagagcagaattc 18846271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 53260223 - 53260260
Alignment:
Q  199 actcacgcagcgtgacttaagtcacgcatgtataaaaa 236  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  53260223 actcacgcagcgtgacttaagtcacgtatgtgtaaaaa 53260260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 4675072 - 4675040
Alignment:
Q  205 gcagcgtgacttaagtcacgcatgtataaaaat 237  Q
    ||||||||||||||||||||||||| |||||||    
T  4675072 gcagcgtgacttaagtcacgcatgtgtaaaaat 4675040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 32304776 - 32304832
Alignment:
Q  190 gcgtgagtta-ctcacgcagcgtgacttaagtcacgcatgtat-aaaaattaagtca 244  Q
    |||||||||| ||||| |||| ||||||||||||||||||| | |||||||||||||    
T  32304776 gcgtgagttaactcacccagcatgacttaagtcacgcatgtgtaaaaaattaagtca 32304832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 259 - 339
Target Start/End: Complemental strand, 52031711 - 52031632
Alignment:
Q  259 tgcgctagttaactagcgcaggagtattttgaacatggctgcaaagcgcgagtgttttgtgcagagtgaagagcagaattc 339  Q
    |||| |||||||||| |||| | ||||||| | || |||||||   |||||||||||||||| | ||||||||||||||||    
T  52031711 tgcgttagttaactaacgcaag-gtattttaagcaaggctgcaggacgcgagtgttttgtgctgggtgaagagcagaattc 52031632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 264 - 341
Target Start/End: Complemental strand, 52562683 - 52562606
Alignment:
Q  264 tagttaactagcgcaggagtattttgaacatggctgcaaagcgcgagtgttttgtgcagagtgaagagcagaattcat 341  Q
    ||||||||||||||||| ||||||||  || |||||||  || |||||||||||||| | ||||||||||||| ||||    
T  52562683 tagttaactagcgcaggggtattttgggcaaggctgcagggcacgagtgttttgtgctgggtgaagagcagaaatcat 52562606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 319
Target Start/End: Original strand, 52562787 - 52562847
Alignment:
Q  259 tgcgctagttaactagcgcaggagtattttgaacatggctgcaaagcgcgagtgttttgtg 319  Q
    |||||||||||||||||||||| |||||||| ||| ||||||||  ||| |||||||||||    
T  52562787 tgcgctagttaactagcgcaggggtattttggacaaggctgcaagtcgcaagtgttttgtg 52562847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 36754119 - 36754175
Alignment:
Q  189 tgcgtgagtta-ctcacgcagcgtgacttaagtcacgcatgtataaaaattaagtca 244  Q
    ||||||||||| |||||||| |||||||||||| ||| ||||||||||| |||||||    
T  36754119 tgcgtgagttaactcacgcaacgtgacttaagttacgtatgtataaaaactaagtca 36754175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 207 - 245
Target Start/End: Complemental strand, 45003414 - 45003376
Alignment:
Q  207 agcgtgacttaagtcacgcatgtataaaaattaagtcat 245  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  45003414 agcgtgatttaagtcacgcatgtgtaaaaattaagtcat 45003376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 340
Target Start/End: Complemental strand, 36182813 - 36182757
Alignment:
Q  284 attttgaacatggctgcaaagcgcgagtgttttgtgcagagtgaagagcagaattca 340  Q
    |||||| |||||||| ||  ||||||||||||||||||| | |||||||| ||||||    
T  36182813 attttggacatggctacagggcgcgagtgttttgtgcagggggaagagcaaaattca 36182757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1107 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1107
Description:

Target: scaffold1107; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 1921 - 1977
Alignment:
Q  190 gcgtgagtta-ctcacgcagcgtgacttaagtcacgcatgtataaaaattaagtcat 245  Q
    |||||||||| |||||||| ||||||||||||||||||| | |||||| ||||||||    
T  1921 gcgtgagttaactcacgcaacgtgacttaagtcacgcatctgtaaaaactaagtcat 1977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 32879746 - 32879699
Alignment:
Q  190 gcgtgagtta-ctcacgcagcgtgacttaagtcacgcatgtataaaaa 236  Q
    |||||||||| ||||||||||||||||||||||||||| || ||||||    
T  32879746 gcgtgagttaactcacgcagcgtgacttaagtcacgcaagtgtaaaaa 32879699  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 259 - 339
Target Start/End: Original strand, 5741522 - 5741602
Alignment:
Q  259 tgcgctagttaactagcgcaggagtattttgaacatggctgcaaagcgcgagtgttttgtgcagagtgaagagcagaattc 339  Q
    |||| |||||||||| |||||| ||||||||  ||||||||||  ||||||| |    |||||| ||||||||||||||||    
T  5741522 tgcgttagttaactaacgcaggtgtattttggtcatggctgcagggcgcgagcgaaaagtgcagggtgaagagcagaattc 5741602  T

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