View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20521_high_21 (Length: 250)
Name: NF20521_high_21
Description: NF20521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20521_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 15429563 - 15429811
Alignment:
| Q |
1 |
ttcaagattttgagagagatgtatttggcgaaattataagtttcaagatgcacgatcttgttcatgatctcgctcagtcaatttcagaagaggtgtgttt |
100 |
Q |
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| T |
15429563 |
ttcaagattttgagagagatgtatttggcgaaattataagtttcaagatgcacgatcttgttcatgatctcgctcagtcaatttcagaagaggtgtgttt |
15429662 |
T |
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| Q |
101 |
ctttacaaaaatcgatgacatgcctagtacattagaaagaatccgccatctctcatttgcagagaatattccagaaagtgcagtttcaattttcatgcgt |
200 |
Q |
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| T |
15429663 |
ctttacaaaaatcgatgacatgcctagtacattagaaagaatccgccatctctcatttgccgagaatattcctgaaagtgcagtttcaattttcatgcgt |
15429762 |
T |
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| Q |
201 |
aacatcaaatcaccgaggacctgctacacaagttcctttgattctgctc |
249 |
Q |
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| T |
15429763 |
aacatcaaatcaccgaggacctgctacacaagttcatttgattttgctc |
15429811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 15421687 - 15421918
Alignment:
| Q |
1 |
ttcaagattttgagagagatgtatttggcgaaattataagtttcaagatgcacgatcttgttcatgatctcgctcagtcaatttcagaagaggtgtgttt |
100 |
Q |
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| T |
15421687 |
ttcaagattttgagagagatgtatttggtgaaattataagtttcaagatgcacgatcttgttcatgatctcgctcggtcaatttcagaagaggtgtgttg |
15421786 |
T |
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| Q |
101 |
ctttacaaaaatcgatgacatgcctagtacattagaaagaatccgccatctctcatttgcagagaatattccagaaagtgcagtttcaattttcatgcgt |
200 |
Q |
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| T |
15421787 |
cattatgaaaatcaatgacaggcctagtacattagaaagaatacgccatctctcaattgaaatgaatattccagcaagtttagtttcaatttggatgcgt |
15421886 |
T |
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| Q |
201 |
aacatcaaatcaccgaggacctgctacacaag |
232 |
Q |
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| T |
15421887 |
aacatcaaatcatcgaggaccttctacacaag |
15421918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 15083091 - 15082933
Alignment:
| Q |
1 |
ttcaagattttgagagagatgtatttggcgaaattataagtttcaagatgcacgatcttgttcatgatctcgctcagtcaatttcagaagaggtgtgttt |
100 |
Q |
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|||||||| |||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||| |
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| T |
15083091 |
ttcaagatattgagacagatgtatttggcaaaattacaagtttcaagatgcacgatcttgttcacgatcttgctcaatcaatttcagatgaggtgtgttg |
15082992 |
T |
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| Q |
101 |
ctttacaaaaatcgatgacatgcctagtacattagaaagaatccgccatctctcatttg |
159 |
Q |
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| T |
15082991 |
cattacaagaaatgatgacatgcctagtacatttgaaagaatccgccatctctcatttg |
15082933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 15331316 - 15331261
Alignment:
| Q |
3 |
caagattttgagagagatgtatttggcgaaattataagtttcaagatgcacgatct |
58 |
Q |
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| T |
15331316 |
caagatattgagacagatatatttggcaaaattacaagtttcaagatgcatgatct |
15331261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 29872343 - 29872302
Alignment:
| Q |
41 |
tttcaagatgcacgatcttgttcatgatctcgctcagtcaat |
82 |
Q |
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| T |
29872343 |
tttcaagatgcatgatcttgtccatgatctcgctcaatcaat |
29872302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 8187227 - 8187145
Alignment:
| Q |
17 |
agatgtatttggcgaaattataagtttcaagatgcacgatcttgttcatgatctcgctcagtcaatttcagaagaggtgtgtt |
99 |
Q |
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||||| |||||| |||||||| |||||||||||| |||||||| |||||||| ||||| || || ||||||||||| |||| |
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| T |
8187227 |
agatgaatttggaaaaattatatatttcaagatgcatgatcttgtacatgatcttgctcaatctatatcagaagaggtttgtt |
8187145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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