View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20521_high_25 (Length: 242)
Name: NF20521_high_25
Description: NF20521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20521_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 2047822 - 2047597
Alignment:
| Q |
1 |
gctaaaaaggtaagaatatcaaatgatgtaaataaggaaaagttaaaaacatcgtttagcatcagtacgagagatctagtttatgttgaactagtcaaat |
100 |
Q |
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| T |
2047822 |
gctaaaaaggtaagaatatcaaatgatgtaaataaggaaaagttaaaaacatcgtttagcatcagtacgagagatctagtttatgttgaactagtcaaat |
2047723 |
T |
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| Q |
101 |
tactagtaaagtaagcaacaatagaaggcacaaaaggcataataacacctcaaattagatggaaataaggtattacagtttaagatggttccaactcaat |
200 |
Q |
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| T |
2047722 |
tactagtaaattaagcaacagtagaaggcacaaaaggcataataacacctcaaattagatggaaataaggtattacagtttaggatggttccaactcaac |
2047623 |
T |
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| Q |
201 |
catcaaagccttattcagcttgtaag |
226 |
Q |
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| T |
2047622 |
catcaaagccttattcagcttgtaag |
2047597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 160
Target Start/End: Complemental strand, 2051295 - 2051202
Alignment:
| Q |
69 |
gagagatctagtttatgttgaactagtcaaattactagtaaagtaagcaacaatagaaggcacaaaaggcata--ataacacctcaaattagat |
160 |
Q |
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| T |
2051295 |
gagagatctagtatatgatgaactagtcaagttacttgtaaagtaaacaatagaagaaggcacaaaaaacataacataacacctcaaatgagat |
2051202 |
T |
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