View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20521_high_26 (Length: 241)

Name: NF20521_high_26
Description: NF20521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20521_high_26
NF20521_high_26
[»] chr8 (9 HSPs)
chr8 (1-239)||(2047815-2048053)
chr8 (31-232)||(2038601-2038803)
chr8 (144-239)||(2029719-2029814)
chr8 (144-239)||(2034637-2034732)
chr8 (140-239)||(1948219-1948318)
chr8 (144-239)||(2051852-2051947)
chr8 (138-239)||(2055703-2055804)
chr8 (144-239)||(2058913-2059008)
chr8 (166-239)||(10769388-10769461)
[»] chr2 (3 HSPs)
chr2 (169-236)||(28742161-28742228)
chr2 (169-239)||(28735025-28735095)
chr2 (169-239)||(28699525-28699595)
[»] chr4 (1 HSPs)
chr4 (169-239)||(48904999-48905069)


Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 2047815 - 2048053
Alignment:
Q  1 tttttagcgttattttcatccgattcaaccatgacctagaggtctcatcagttcaatgtccgatttggttttgaagatattaatcggtagaataaaaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2047815 tttttagcgttattttcatccgattcaaccatgacctagaggtctcatcagttcaatgtccgatttggttttgaagatattaatcggtagaataaaaatt 2047914  T
Q  101 agatttaaacatatagctatattttatttctttttctacatagctaattatttgtttgtttatcttgtagcttataacaaatgacagattcaagagtgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2047915 agatttaaacatatagctatattttatttctttttctacatagctaattatttgtttgtttatcttgtagcttataacaaatgacagattcaagagtttt 2048014  T
Q  201 gaacacaaagtacttgcaaataaaattggtccaagaata 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2048015 gaacacaaagtacttgcaaataaaattggtccaagaata 2048053  T

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Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 31 - 232
Target Start/End: Original strand, 2038601 - 2038803
Alignment:
Q  31 atgacctagaggtctcatcagttcaatgtccgatttggttttgaagatattaatcggtagaataaaaattagatttaaacatatagctatattttatttc 130  Q
    ||||||||||||| |||| ||||| || |||||||||||| | ||||||||||| || || ||| | | ||||| |||||| ||||||| ||||| |||     
T  2038601 atgacctagaggtttcataagttcgatctccgatttggttgttaagatattaattggaaggatatacaatagatgtaaacaaatagctaaattttgtttt 2038700  T
Q  131 ttttt-ctacatagctaattatttgtttgtttatcttgtagcttataacaaatgacagattcaagagtgttgaacacaaagtacttgcaaataaaattgg 229  Q
    ||||| || ||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  2038701 tttttgctgcatggctaattattagtttgtttaccttgtagcttataacaaatgacagattcaagagtgttgaacacagagtacttgcgaataaaattgg 2038800  T
Q  230 tcc 232  Q
    |||    
T  2038801 tcc 2038803  T

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Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 239
Target Start/End: Original strand, 2029719 - 2029814
Alignment:
Q  144 ctaattatttgtttgtttatcttgtagcttataacaaatgacagattcaagagtgttgaacacaaagtacttgcaaataaaattggtccaagaata 239  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| | |||| |||||||| || ||||||||||||||    
T  2029719 ctaattatttgtttgtttaccttgtagcttataacaaatgatagattcaagagtgttgaacatagagtagttgcaaatcaagttggtccaagaata 2029814  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 239
Target Start/End: Original strand, 2034637 - 2034732
Alignment:
Q  144 ctaattatttgtttgtttatcttgtagcttataacaaatgacagattcaagagtgttgaacacaaagtacttgcaaataaaattggtccaagaata 239  Q
    ||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| || |||| |||||||||    
T  2034637 ctaattatttgtttgcttcaattgtagcttataacaaatgacagattcaagagtgttgaacacagagtagttgcaaatgaagttggcccaagaata 2034732  T

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Target: chr8; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 140 - 239
Target Start/End: Complemental strand, 1948318 - 1948219
Alignment:
Q  140 atagctaattatttgtttgtttatcttgtagcttataacaaatgacagattcaagagtgttgaacacaaagtacttgcaaataaaattggtccaagaata 239  Q
    ||||||||||||||  ||||||   |||||||||||||||||||||| |||||||||||||||||| | |||| |||||||| || ||||||||||||||    
T  1948318 atagctaattattttcttgtttgatttgtagcttataacaaatgacaaattcaagagtgttgaacatagagtagttgcaaatcaagttggtccaagaata 1948219  T

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Target: chr8; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 144 - 239
Target Start/End: Original strand, 2051852 - 2051947
Alignment:
Q  144 ctaattatttgtttgtttatcttgtagcttataacaaatgacagattcaagagtgttgaacacaaagtacttgcaaataaaattggtccaagaata 239  Q
    ||||||||||||||||||   ||||||||||| |||||||||| |||||||||||||| ||| | ||||||||||||| || ||||||||||||||    
T  2051852 ctaattatttgtttgtttgaattgtagcttattacaaatgacaaattcaagagtgttgtacatagagtacttgcaaatcaagttggtccaagaata 2051947  T

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Target: chr8; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 138 - 239
Target Start/End: Original strand, 2055703 - 2055804
Alignment:
Q  138 acatagctaattatttgtttgtttatcttgtagcttataacaaatgacagattcaagagtgttgaacacaaagtacttgcaaataaaattggtccaagaa 237  Q
    ||||| |||||| |||||||||||    ||||||||||||||||||||| |||||||||||||| ||| | ||||||||| |||| | ||||||||||||    
T  2055703 acataactaattctttgtttgtttgaactgtagcttataacaaatgacaaattcaagagtgttgtacatagagtacttgccaatacagttggtccaagaa 2055802  T
Q  238 ta 239  Q
    ||    
T  2055803 ta 2055804  T

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Target: chr8; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 144 - 239
Target Start/End: Original strand, 2058913 - 2059008
Alignment:
Q  144 ctaattatttgtttgtttatcttgtagcttataacaaatgacagattcaagagtgttgaacacaaagtacttgcaaataaaattggtccaagaata 239  Q
    ||||||||||| ||||||   |||||||||||||||||||||| |||||||||||||| ||| | |||| |||| ||| || ||||||||||||||    
T  2058913 ctaattatttgattgtttgaattgtagcttataacaaatgacaaattcaagagtgttgtacatagagtaattgccaatcaagttggtccaagaata 2059008  T

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Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 10769388 - 10769461
Alignment:
Q  166 tgtagcttataacaaatgacagattcaagagtgttgaacacaaagtacttgcaaataaaattggtccaagaata 239  Q
    ||||||||||||||||||||| |||||||||||| || |||| ||| |||||||||||  ||||||||||||||    
T  10769388 tgtagcttataacaaatgacaaattcaagagtgtggagcacagagttcttgcaaataatgttggtccaagaata 10769461  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 28742228 - 28742161
Alignment:
Q  169 agcttataacaaatgacagattcaagagtgttgaacacaaagtacttgcaaataaaattggtccaaga 236  Q
    |||||||||||||||||||||||||||||||||| |||| |||||| |||||||  ||||||||||||    
T  28742228 agcttataacaaatgacagattcaagagtgttgagcacagagtactagcaaatactattggtccaaga 28742161  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 28735095 - 28735025
Alignment:
Q  169 agcttataacaaatgacagattcaagagtgttgaacacaaagtacttgcaaataaaattggtccaagaata 239  Q
    |||||||||||||||| | |||||||||||||||||| | |||||| |||||| | |||||||||||||||    
T  28735095 agcttataacaaatgataaattcaagagtgttgaacatagagtactggcaaatgacattggtccaagaata 28735025  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 28699595 - 28699525
Alignment:
Q  169 agcttataacaaatgacagattcaagagtgttgaacacaaagtacttgcaaataaaattggtccaagaata 239  Q
    |||| ||||||||||||| |||||||||||||||||| | |||||| ||||||   |||||||||||||||    
T  28699595 agctgataacaaatgacaaattcaagagtgttgaacatagagtactggcaaatggcattggtccaagaata 28699525  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 48905069 - 48904999
Alignment:
Q  169 agcttataacaaatgacagattcaagagtgttgaacacaaagtacttgcaaataaaattggtccaagaata 239  Q
    ||||||||||||||||||  || |||||||||||||||| |||| |||||||| || ||||||||||||||    
T  48905069 agcttataacaaatgacaagtttaagagtgttgaacacagagtagttgcaaatcaagttggtccaagaata 48904999  T

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