View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20521_high_27 (Length: 239)

Name: NF20521_high_27
Description: NF20521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20521_high_27
NF20521_high_27
[»] chr4 (4 HSPs)
chr4 (59-239)||(26417327-26417505)
chr4 (69-117)||(36219224-36219272)
chr4 (59-106)||(34483465-34483512)
chr4 (59-119)||(51997339-51997399)
[»] chr8 (5 HSPs)
chr8 (61-117)||(10288172-10288228)
chr8 (63-123)||(18807126-18807186)
chr8 (59-123)||(29416747-29416811)
chr8 (59-123)||(14728839-14728903)
chr8 (59-117)||(26705701-26705759)
[»] chr5 (6 HSPs)
chr5 (59-117)||(13417186-13417244)
chr5 (59-106)||(25768294-25768341)
chr5 (59-97)||(8680484-8680522)
chr5 (59-100)||(10933616-10933657)
chr5 (59-123)||(37194387-37194451)
chr5 (59-117)||(4277325-4277383)
[»] chr3 (5 HSPs)
chr3 (59-123)||(38138148-38138212)
chr3 (59-113)||(25926334-25926388)
chr3 (59-93)||(7886096-7886130)
chr3 (173-235)||(13012096-13012158)
chr3 (59-117)||(50346062-50346120)
[»] chr2 (5 HSPs)
chr2 (59-117)||(20683480-20683538)
chr2 (59-117)||(43302429-43302487)
chr2 (59-123)||(11511841-11511905)
chr2 (63-123)||(39445996-39446056)
chr2 (69-117)||(32414669-32414717)
[»] chr7 (6 HSPs)
chr7 (59-106)||(44237941-44237988)
chr7 (63-116)||(25795750-25795803)
chr7 (59-101)||(33882189-33882231)
chr7 (61-94)||(22074402-22074435)
chr7 (59-112)||(37504017-37504070)
chr7 (59-123)||(39837530-39837594)
[»] chr1 (5 HSPs)
chr1 (59-117)||(5827671-5827729)
chr1 (64-124)||(33603368-33603428)
chr1 (59-101)||(1775036-1775078)
chr1 (59-117)||(30335642-30335700)
chr1 (59-117)||(43177770-43177828)
[»] chr6 (3 HSPs)
chr6 (59-120)||(379093-379154)
chr6 (63-125)||(11703090-11703152)
chr6 (72-117)||(4405616-4405661)


Alignment Details
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 59 - 239
Target Start/End: Original strand, 26417327 - 26417505
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatgttctaaagatgcttaatgagtaattgtcatataatgagccc 158  Q
    |||||||| ||||||||||||||||| ||| |||||| |||||||||| ||||| |||| ||||||||||||||||||||||||| ||||  ||||||||    
T  26417327 tgatgtgttaatgtgagacccgtttatgacatcaaatatgaggatctccattgtggatgctctaaagatgcttaatgagtaattgccata--atgagccc 26417424  T
Q  159 tgatagtattgacgaaaaggaaataaattgggataacgcataacaaacgatgctgaagcgaagggattgcgttactaacct 239  Q
     |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||    
T  26417425 cgatagtattgacgaaaagaaaataaattgggataacgcataacaaacgatgttgaagtgaagggattacgttactaacct 26417505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 36219224 - 36219272
Alignment:
Q  69 atgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 117  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  36219224 atgtgagacccgtttaagacctcaaatgtgagggtctccattgtagatg 36219272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 34483512 - 34483465
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctc 106  Q
    ||||||||| |||||| |||| ||||||||||||||||||||| ||||    
T  34483512 tgatgtgtccatgtgaaacccatttaagacctcaaatgtgagggtctc 34483465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 51997339 - 51997399
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatgtt 119  Q
    |||||||| |||||| || || ||||||||||||||  ||||| |||| ||||||||||||    
T  51997339 tgatgtgttaatgtgggatccatttaagacctcaaagttgagggtctccattgtagatgtt 51997399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 10288172 - 10288228
Alignment:
Q  61 atgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 117  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  10288172 atgtgtccatgtgagacccgtttaagacctcaaatgtgagggtctttattgtagatg 10288228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 18807126 - 18807186
Alignment:
Q  63 gtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatgttctaa 123  Q
    ||||| ||||||||||||||||| ||||||||||||||| |||| ||||| |||| |||||    
T  18807126 gtgtccatgtgagacccgtttaaaacctcaaatgtgagggtctccattgtggatgctctaa 18807186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 29416747 - 29416811
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatgttctaa 123  Q
    ||||||||| |||| |||||||||||||||||||||||||||| | || ||||| |||| |||||    
T  29416747 tgatgtgtctatgtaagacccgtttaagacctcaaatgtgagggtttccattgtggatgctctaa 29416811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 14728903 - 14728839
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatgttctaa 123  Q
    ||||||||| ||||||||||| ||||||||||||||  ||||| |||| ||||| |||| |||||    
T  14728903 tgatgtgtccatgtgagacccatttaagacctcaaagttgagggtctccattgtggatgctctaa 14728839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 26705759 - 26705701
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 117  Q
    |||||| || ||||| || |||||||||||||||||||||||| |||| ||||| ||||    
T  26705759 tgatgtatccatgtgtgaaccgtttaagacctcaaatgtgagggtctccattgttgatg 26705701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 13417244 - 13417186
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 117  Q
    ||||||||| |||||  ||||||||||||||||||||||||||||||| ||||||||||    
T  13417244 tgatgtgtccatgtggaacccgtttaagacctcaaatgtgaggatctccattgtagatg 13417186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 25768294 - 25768341
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctc 106  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  25768294 tgatgtgtctatgtgggacccgtttaagacctcaaatgtgaggatctc 25768341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 8680522 - 8680484
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaaatgt 97  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  8680522 tgatgtgtccatgtgagacccgtttaagacctcaaatgt 8680484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 10933616 - 10933657
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgag 100  Q
    ||||||||| |||||| |||||||||||||||||||||||||    
T  10933616 tgatgtgtccatgtgatacccgtttaagacctcaaatgtgag 10933657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 37194387 - 37194451
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatgttctaa 123  Q
    ||||||||||||||||||||| ||||| ||||||||  |||| ||||| ||||| |||| |||||    
T  37194387 tgatgtgtcaatgtgagacccatttaaaacctcaaagatgagaatctccattgtggatgctctaa 37194451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 4277383 - 4277325
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 117  Q
    |||||||||||| |||||||| ||||||||||||||  ||||  |||| ||||||||||    
T  4277383 tgatgtgtcaatatgagacccatttaagacctcaaagatgagagtctccattgtagatg 4277325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 38138212 - 38138148
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatgttctaa 123  Q
    ||||||||| || |||||||||||||||||||||||||||||| |||| ||||| |||| |||||    
T  38138212 tgatgtgtccatatgagacccgtttaagacctcaaatgtgagggtctccattgtggatgctctaa 38138148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 25926388 - 25926334
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgta 113  Q
    ||||| ||| ||||| ||||||||||||||||||||||||||| |||| ||||||    
T  25926388 tgatgagtccatgtgggacccgtttaagacctcaaatgtgagggtctcgattgta 25926334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 93
Target Start/End: Original strand, 7886096 - 7886130
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaa 93  Q
    ||||||||| |||||||||||||||||||||||||    
T  7886096 tgatgtgtctatgtgagacccgtttaagacctcaa 7886130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 13012096 - 13012158
Alignment:
Q  173 aaaaggaaataaattgggataacgcataacaaacgatgctgaagcgaagggattgcgttacta 235  Q
    |||||||| |||||||| |||||  ||||||||||||||| ||| |||||||||  |||||||    
T  13012096 aaaaggaagtaaattggaataactgataacaaacgatgctaaagggaagggattatgttacta 13012158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 50346062 - 50346120
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 117  Q
    ||||||||  |||| |||| ||||||||||||||||||||||| |||| ||||| ||||    
T  50346062 tgatgtgttcatgtaagactcgtttaagacctcaaatgtgagggtctccattgtggatg 50346120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 20683480 - 20683538
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 117  Q
    ||||||||| ||||||||||  ||||||||||||||||||||| |||||||||| ||||    
T  20683480 tgatgtgtccatgtgagacctatttaagacctcaaatgtgagggtctctattgtggatg 20683538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 43302429 - 43302487
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 117  Q
    ||||||||||||||| |||| |||||||||||||||  ||||| |||||||||| ||||    
T  43302429 tgatgtgtcaatgtgggacctgtttaagacctcaaaattgagggtctctattgtggatg 43302487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 11511905 - 11511841
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatgttctaa 123  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||  |||| ||||| |||| |||||    
T  11511905 tgatgtgtccatgtgggacccgtttaagacctcaaatatgagtgtctccattgtggatgctctaa 11511841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 39445996 - 39446056
Alignment:
Q  63 gtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatgttctaa 123  Q
    ||||||||||| |||||||||||||||||||   ||||| |||| ||||| ||||||||||    
T  39445996 gtgtcaatgtgggacccgtttaagacctcaagattgagggtctccattgtggatgttctaa 39446056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 32414669 - 32414717
Alignment:
Q  69 atgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 117  Q
    ||||| || |||||||||||||||||| |||||||||| ||||| ||||    
T  32414669 atgtgggatccgtttaagacctcaaatttgaggatctccattgtggatg 32414717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 44237988 - 44237941
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctc 106  Q
    ||||||||| |||||||| |||||||||||||||||||||||| ||||    
T  44237988 tgatgtgtctatgtgagagccgtttaagacctcaaatgtgagggtctc 44237941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 25795803 - 25795750
Alignment:
Q  63 gtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagat 116  Q
    ||||||||||| ||||||||||||| ||||||  ||| ||||||||||||||||    
T  25795803 gtgtcaatgtgggacccgtttaagatctcaaaattgaagatctctattgtagat 25795750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 33882189 - 33882231
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgagg 101  Q
    ||||||||| ||||| || ||||||||||||||||||||||||    
T  33882189 tgatgtgtccatgtgggatccgtttaagacctcaaatgtgagg 33882231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 22074402 - 22074435
Alignment:
Q  61 atgtgtcaatgtgagacccgtttaagacctcaaa 94  Q
    ||||||| ||||||||||||||||||||||||||    
T  22074402 atgtgtccatgtgagacccgtttaagacctcaaa 22074435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 37504017 - 37504070
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgt 112  Q
    ||||||||| | ||| |||||||||||||| |||||||||||| |||| |||||    
T  37504017 tgatgtgtccacgtgggacccgtttaagacttcaaatgtgagggtctccattgt 37504070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 39837594 - 39837530
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatgttctaa 123  Q
    ||||| ||| ||||| ||||||||||||||| ||||||||||  |||| |||||  |||||||||    
T  39837594 tgatgcgtccatgtgtgacccgtttaagaccacaaatgtgagagtctccattgtgaatgttctaa 39837530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 5827671 - 5827729
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 117  Q
    ||||||||| ||||||||||||||||| ||||||||||||||  |||| ||||| ||||    
T  5827671 tgatgtgtccatgtgagacccgtttaaaacctcaaatgtgagagtctccattgtggatg 5827729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 33603428 - 33603368
Alignment:
Q  64 tgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatgttctaaa 124  Q
    |||| |||||||| |||||||||||||||||  ||| |||||| |||||||||| ||||||    
T  33603428 tgtctatgtgagatccgtttaagacctcaaaattgaagatctcgattgtagatgctctaaa 33603368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 1775036 - 1775078
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgagg 101  Q
    |||||| || ||||| |||||||||||||||||||||||||||    
T  1775036 tgatgtttccatgtgtgacccgtttaagacctcaaatgtgagg 1775078  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 30335700 - 30335642
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 117  Q
    |||||||||||||||| ||| |||||||||||||||  ||||| |||| ||||| ||||    
T  30335700 tgatgtgtcaatgtgaaacctgtttaagacctcaaagttgagggtctccattgtggatg 30335642  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 43177828 - 43177770
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 117  Q
    |||| |||| ||||| || |||||||||||||||||||||||| |||| ||||| ||||    
T  43177828 tgatctgtccatgtgggatccgtttaagacctcaaatgtgagggtctccattgtggatg 43177770  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 379093 - 379154
Alignment:
Q  59 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatgttc 120  Q
    ||||||||| ||||| ||||||||||||||||||||  ||||  |||||||||| |||||||    
T  379093 tgatgtgtctatgtgggacccgtttaagacctcaaaattgagagtctctattgtggatgttc 379154  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 11703152 - 11703090
Alignment:
Q  63 gtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatgttctaaag 125  Q
    |||||||||||| |||||||||| |||||||   ||||| |||||||||| |||| |||||||    
T  11703152 gtgtcaatgtgaaacccgtttaaaacctcaagattgagggtctctattgtggatgctctaaag 11703090  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 4405661 - 4405616
Alignment:
Q  72 tgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 117  Q
    |||||||||||||||||||||||||  ||| |||||||||| ||||    
T  4405661 tgagacccgtttaagacctcaaatgcaagggtctctattgtggatg 4405616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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