View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20521_high_29 (Length: 237)
Name: NF20521_high_29
Description: NF20521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20521_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 219
Target Start/End: Complemental strand, 40137201 - 40136992
Alignment:
| Q |
10 |
tcgaagaatatgtgacacgatttatttgcagatcattacaatctcatggatactaggttttggaatcattagtatcaatgtgtactacctcagtactgcc |
109 |
Q |
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| T |
40137201 |
tcgaaaaaaatgtgacacgatttatttgcagatcattacaatctcatggatactaggttttggaatcattagtatcaatgtgtactacctcagtactgcc |
40137102 |
T |
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| Q |
110 |
tttgtgaagtggataatacatagtagtctaccaaaggtggcaaatgtgttcattgggattatagtgtttcctctaatggcaatttatattgcctcagtta |
209 |
Q |
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| T |
40137101 |
tttgtgaagtggataatacatagtagtctaccaaaggtggcaaatgtgttcattgggattatagtgtttcctctaatggcaatttatattgcctcagtta |
40137002 |
T |
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| Q |
210 |
tctaccttac |
219 |
Q |
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|||||||||| |
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| T |
40137001 |
tctaccttac |
40136992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 36 - 213
Target Start/End: Complemental strand, 40125071 - 40124894
Alignment:
| Q |
36 |
tgcagatcattacaatctcatggatactaggttttggaatcattagtatcaatgtgtactacctcagtactgcctttgtgaagtggataatacatagtag |
135 |
Q |
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|||||||||||| |||||||||||||| ||||| ||||||||| | ||||||||||||||||||| |||||| |||||| ||||| || || | || |
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| T |
40125071 |
tgcagatcattatcatctcatggatactgggtttgggaatcattggaatcaatgtgtactacctcattactgcttttgtgggttggattattcacaacag |
40124972 |
T |
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| Q |
136 |
tctaccaaaggtggcaaatgtgttcattgggattatagtgtttcctctaatggcaatttatattgcctcagttatcta |
213 |
Q |
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||||||||||||||||||||||||||||||| | |||||||| |||||||||||| | ||||| | |||||||||||| |
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| T |
40124971 |
tctaccaaaggtggcaaatgtgttcattgggctcatagtgttccctctaatggcactgtatatcgtctcagttatcta |
40124894 |
T |
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