View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20521_high_6 (Length: 381)
Name: NF20521_high_6
Description: NF20521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20521_high_6 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 28 - 365
Target Start/End: Complemental strand, 52467 - 52128
Alignment:
| Q |
28 |
tggaatcatcataaatatttgatgttgagaacacttgctgactcaagtannnnnnnngttatatgattatatctattctactaagtatatttcgcccctt |
127 |
Q |
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| T |
52467 |
tggaataatcataaatgtttgatgttgagaacacttgctgactcaagtattttttttgttatatgattatatctattctactaagtatatttcgcccctt |
52368 |
T |
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| Q |
128 |
nnnnnnngtatatttcgcttcaaagaatgtatattgattttctaaacttaaccttttacatttatgttgtgac--agtatatttcgcttttttattgatg |
225 |
Q |
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| T |
52367 |
aaaaaaagtatatttcgcttcaaagaatgtatatatattttctaaacttaaccttttacatttatgttgtgacaaagtatatttcgcttttttattgatg |
52268 |
T |
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| Q |
226 |
caatgaagatgnnnnnnnnnngtgagaagtcaaacaaacatgtcatgtactattgttctaaggtactagtactaaacaaatgaaatgttcaattgctggt |
325 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52267 |
caatgaagatg--tgttttttgtgagaagtcaaacaaacatgtcatgtactattgttctaaggtactagtactaaacaaatgaaatgttcaattgctggt |
52170 |
T |
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| Q |
326 |
ggtgctagttaataaagctgcaact--tatatatgtattcaa |
365 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |
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| T |
52169 |
ggtgctagttaataaagctgcaacttctatatatgtattcaa |
52128 |
T |
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