View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20521_high_7 (Length: 331)
Name: NF20521_high_7
Description: NF20521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20521_high_7 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 331
Target Start/End: Original strand, 21596817 - 21597140
Alignment:
| Q |
8 |
ccaagaatataagaaccaacaacaacaaacaaacacgaaagaaccttccataaatcactcttatccgttgattccctcgcataatatctcctcacaagca |
107 |
Q |
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| T |
21596817 |
ccaacaatacaagaaccaacaacaacaaacaaacacgaaagaaccttccataaatcgctcttatcagttgattccctcgcataatatctcctcacaagca |
21596916 |
T |
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| Q |
108 |
acgcaatagccataagcataaagatgaacagagtacttacagaaaaaacactagacagaacatccaaactagtaaaaagagcaacaacacaacttgacaa |
207 |
Q |
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| T |
21596917 |
aagcaatcgccataagcataaaaatgaacagagtacttacagaaaaaacactagacagaacatccaaactagtaaaaagagcaacaacacaacttgacaa |
21597016 |
T |
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| Q |
208 |
agttgtcaaaagtgtagcattaataggtgttccagttttaggatgaataagtgcaaaaaagggtggaatcatatgtgaccttgcaatttgagtagtatac |
307 |
Q |
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| T |
21597017 |
agttgtcaaaagtgtagcattaataggtgttccagtttttggatgaataagtgcaaaaaagggtggaatcatttgtgaccttgcaatttgagtagtgtac |
21597116 |
T |
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| Q |
308 |
ctagcttgtcccattgacccaaca |
331 |
Q |
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| T |
21597117 |
ctagcttgtcccattgacccaaca |
21597140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 331
Target Start/End: Original strand, 11986993 - 11987304
Alignment:
| Q |
20 |
gaaccaacaacaacaaacaaacacgaaagaaccttccataaatcactcttatccgttgattccctcgcataatatctcctcacaagcaacgcaatagcca |
119 |
Q |
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| T |
11986993 |
gaaccaacaacaacaaacaaacacaaaagaaccttccataaatcactcttatccgttgcttccctcgcataatatctcctcacaagcaacgcaatagcca |
11987092 |
T |
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| Q |
120 |
taagcataaagatgaacagagtacttacagaaaaaacactagacagaacatccaaactagtaaaaagagcaacaacacaacttgacaaagttgtcaaaag |
219 |
Q |
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| T |
11987093 |
taagcataaaaatgaaaagagtacttacagaaaaaacactagccagaacatccacactagtaaaaagagcaacaacacaacttgacaaagttgtcaaaag |
11987192 |
T |
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| Q |
220 |
tgtagcattaataggtgttccagttttaggatgaataagtgcaaaaaagggtggaatcatatgtgaccttgcaatttgagtagtatacctagcttgtccc |
319 |
Q |
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| T |
11987193 |
tgtagcattaataggtgttccagttttgggatgaacaagtgcaaaaaagggtggaatcatatgtgaccttgcaatttgagtagtgtacctagcttgtccc |
11987292 |
T |
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| Q |
320 |
attgacccaaca |
331 |
Q |
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| T |
11987293 |
attgacccaaca |
11987304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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