View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20521_low_10 (Length: 321)
Name: NF20521_low_10
Description: NF20521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20521_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 303
Target Start/End: Original strand, 30597952 - 30598244
Alignment:
| Q |
11 |
cacagaggtcaagagaggttaaagtgtgacatgnnnnnnngcaagatgagaagtgttgaaaatcacagcaggcatggactcttaatttctcaacattatg |
110 |
Q |
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| T |
30597952 |
cacaaaggtcaagagaggttaaagtgtgacatgaaaaaaagcaagatgagaagtgttgaaaatcacagcaggcatggactcttaatttctcaacattatg |
30598051 |
T |
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| Q |
111 |
tgaaacagcgtatgtgatgacctttttgagtaggcgaggatccacaacaccccggcacagaaaatcaacagcgtgcagcggggttgacacatcacgaaga |
210 |
Q |
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| T |
30598052 |
tgaaacagcgtatgtgacgacctttttgagtaggcgaggatccacaacaccccggcacagaaaatcaacagcgtgcagcggggttgacacatcacgaaga |
30598151 |
T |
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| Q |
211 |
cacaaaatacgagacacaaatctattgaaacttttgatcctcataaagtgtgaagaacataatataagggtgggaagatgcttccagagatgt |
303 |
Q |
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| T |
30598152 |
cacaaaatacgagacacaaatctattgaaacttttgatcctcataaagtgtgaagaacataatataagggtgggaagatgcttccaaagatgt |
30598244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 204 - 301
Target Start/End: Complemental strand, 6844294 - 6844197
Alignment:
| Q |
204 |
acgaagacacaaaatacgagacacaaatctattgaaacttttgatcctcataaagtgtgaagaacataatataagggtgggaagatgcttccagagat |
301 |
Q |
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| T |
6844294 |
acgaagagacaaaatacgagacacaaatttattgaaacttgtcatactcgtaaagtgtgaagtcttcaatataagagtgggaagatgtttccaaagat |
6844197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 6889313 - 6889257
Alignment:
| Q |
180 |
agcgtgcagcggggttgacacatcacgaagacacaaaatacgagacacaaatctatt |
236 |
Q |
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| T |
6889313 |
agcgcgcagtggggttgacgcattacgaagagacaaaatgcgagacacaaatttatt |
6889257 |
T |
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