View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20521_low_23 (Length: 250)
Name: NF20521_low_23
Description: NF20521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20521_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 26417952 - 26417844
Alignment:
| Q |
11 |
agaatatcacgatcttgaagcatgatacattcgagtccattattcatcagaagaagaatttagaagctcggttcaatgcaattcgcttgaaggaaaaatg |
110 |
Q |
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| T |
26417952 |
agaatatcacgatcttgaagcattatacattcgagtccattattcatcagaagaagaatttagaagctcggttcaatgcaattcgcttgaaggaaaaatg |
26417853 |
T |
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| Q |
111 |
cacgttagg |
119 |
Q |
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| T |
26417852 |
cacgttagg |
26417844 |
T |
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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 156 - 250
Target Start/End: Complemental strand, 26417807 - 26417702
Alignment:
| Q |
156 |
aacaagtgataattatcattaagggcttgatac-----------attgcattctttgagtcggtgtcaaaatctcaatgaaagcaccaattgatacgata |
244 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||| |
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| T |
26417807 |
aacaagtggtaattatcattaagggcttgatacgataaaagtaaattgcattctttgagtcagtgtcaaaatctcaataaaagcacaaattgatacgata |
26417708 |
T |
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| Q |
245 |
aagtaa |
250 |
Q |
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|||||| |
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| T |
26417707 |
aagtaa |
26417702 |
T |
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