View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20521_low_24 (Length: 249)
Name: NF20521_low_24
Description: NF20521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20521_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 21597151 - 21597379
Alignment:
| Q |
1 |
ttgtcattcctttcaaagcacaaatactcactaaatatttaccccatttcataccaatttgaacaaaagcaaccgaataagcagctccaacatcaatctc |
100 |
Q |
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| T |
21597151 |
ttgtcattcctttcaaagcacaaatactcactaaatatttaccccatttcataccaatttgaacaaaagcaactgaataagcagctccagcatcaatctc |
21597250 |
T |
|
| Q |
101 |
actatacttaaccatattcacaagtgccaatgccattaaacaataaataaccgtgatcatagacattgaaccaattaaaccaataggtatatctcttgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21597251 |
actatacttaaccatattcacaagtgccaatgccatcaaacaataaataaccgtgatcatagacattgaaccaattaaaccaataggtatatctctagaa |
21597350 |
T |
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| Q |
201 |
gggtttttagtttcttcagccatagttgc |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
21597351 |
gggtttttagtttcttcagccatagttgc |
21597379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11987315 - 11987370
Alignment:
| Q |
1 |
ttgtcattcctttcaaagcacaaatactcactaaatatttaccccatttcatacca |
56 |
Q |
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| T |
11987315 |
ttgtcattcctttcaaagaacaaatactcactaaatatttaccccatttcatacca |
11987370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 229
Target Start/End: Original strand, 15115555 - 15115653
Alignment:
| Q |
131 |
tgccattaaacaataaataaccgtgatcatagacattgaaccaattaaaccaataggtatatctcttgaagggtttttagtttcttcagccatagttgc |
229 |
Q |
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|||||| || ||||| ||||| ||||||| ||||||||||||||| || || || ||||| || ||| || |||||||||||||||||||| ||||| |
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| T |
15115555 |
tgccatcaagcaatagataactgtgatcacagacattgaaccaatcaagcctattggtatgtcctttggcggatttttagtttcttcagccatggttgc |
15115653 |
T |
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