View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20521_low_25 (Length: 245)
Name: NF20521_low_25
Description: NF20521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20521_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 31738801 - 31738657
Alignment:
| Q |
17 |
agagtgaacacaacgagcaccacgaaatgtgggtaatggggtcactctagctagctgaatgggagtgattactcgtgcaccgaccatcccgtatttacca |
116 |
Q |
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| T |
31738801 |
agagtgaacacaacgagcaccacgaaatgtgggtaatggggtcactctagctagctgaatgggagtgattactcgtgcaccgaccatcccgtatttacca |
31738702 |
T |
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| Q |
117 |
tgttcaattattcatgccatatggtgcatacaaaacaggaccatc |
161 |
Q |
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| T |
31738701 |
tgttcaattattcatgccatatggtgcatacaaaacaggaccatc |
31738657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 163 - 245
Target Start/End: Complemental strand, 31738608 - 31738526
Alignment:
| Q |
163 |
aaggtttttgttggtccaaaaccaatttggaagcaacaaaattatttacacaacatatagtttgaatattttatattataatt |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31738608 |
aaggtttttgttggtccaaaaccaatttggaagcaacaaaattatttacacaacatatagtttgaatattttatattataatt |
31738526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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