View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20521_low_29 (Length: 238)
Name: NF20521_low_29
Description: NF20521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20521_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 50101396 - 50101617
Alignment:
| Q |
1 |
caacgttgggaactcgcttccgttctccatttccttgacgtaagatattcgcgtcattcatcctctggttcgaatgttcctattaggttacgattcgtaa |
100 |
Q |
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| T |
50101396 |
caacgttgggaactcgcttccgttctccatttccttgacgtaagatattcgcgttattcatcgtctggttcgaatgttcctattaggttacgattcgtaa |
50101495 |
T |
|
| Q |
101 |
tcatctcagtaacattttttgtggttcgtgtgattcaggtgtttagtccattacttggtaatgatctgaaggttacagccgaagaaattgagatcggact |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50101496 |
tcatcttagtaacattttttgtggttcgtgtgattcaggtgtttagtccattacttggtaatgatctgaaggttacagccgaagaaattgagatcggact |
50101595 |
T |
|
| Q |
201 |
tgttaaacctaatgcttctctt |
222 |
Q |
| |
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||||||||||||||||| |||| |
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|
| T |
50101596 |
tgttaaacctaatgcttttctt |
50101617 |
T |
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