View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20521_low_34 (Length: 218)

Name: NF20521_low_34
Description: NF20521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20521_low_34
NF20521_low_34
[»] chr1 (3 HSPs)
chr1 (119-201)||(7220802-7220884)
chr1 (149-201)||(33713311-33713364)
chr1 (161-201)||(13211787-13211827)
[»] chr7 (7 HSPs)
chr7 (126-201)||(5102022-5102097)
chr7 (139-206)||(8038174-8038242)
chr7 (131-201)||(20175173-20175244)
chr7 (149-201)||(2504812-2504865)
chr7 (161-201)||(2564472-2564512)
chr7 (161-201)||(3327047-3327087)
chr7 (161-201)||(26134230-26134270)
[»] chr6 (1 HSPs)
chr6 (117-201)||(10504213-10504298)
[»] chr8 (3 HSPs)
chr8 (119-201)||(24119143-24119226)
chr8 (149-201)||(17972805-17972858)
chr8 (149-201)||(45265009-45265062)
[»] chr4 (1 HSPs)
chr4 (142-201)||(12590308-12590366)
[»] chr2 (2 HSPs)
chr2 (118-177)||(25939751-25939810)
chr2 (161-201)||(12950511-12950551)
[»] chr5 (3 HSPs)
chr5 (149-201)||(20533496-20533549)
chr5 (161-201)||(17337279-17337319)
chr5 (146-197)||(17830733-17830785)
[»] chr3 (1 HSPs)
chr3 (161-201)||(21302520-21302560)


Alignment Details
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 7220884 - 7220802
Alignment:
Q  119 cttcatgatttaaattagtctggtaatttcattcttctttcaccttggtaatgtagacgagataaggttgcccgtttgtagaa 201  Q
    |||||||| |||||||||||   |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  7220884 cttcatgacttaaattagtccattaatttcattcttctttcaccttggtaaggtagacgagataagcttgcccgtttgtagaa 7220802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 33713364 - 33713311
Alignment:
Q  149 attcttctttca-ccttggtaatgtagacgagataaggttgcccgtttgtagaa 201  Q
    |||||||||||| |||||||||  ||||| |||||||||||||| |||||||||    
T  33713364 attcttctttcatccttggtaagatagacaagataaggttgcccatttgtagaa 33713311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 13211787 - 13211827
Alignment:
Q  161 ccttggtaatgtagacgagataaggttgcccgtttgtagaa 201  Q
    ||||||||| ||||| |||| ||||||||||||||||||||    
T  13211787 ccttggtaaggtagatgagacaaggttgcccgtttgtagaa 13211827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 5102022 - 5102097
Alignment:
Q  126 atttaaattagtctggtaatttcattcttctttcaccttggtaatgtagacgagataaggttgcccgtttgtagaa 201  Q
    |||||||||||  | |||| |||||||||||||||||| ||||| ||||| |||||| |||||| |||||||||||    
T  5102022 atttaaattagcttagtaacttcattcttctttcacctcggtaaggtagatgagatagggttgctcgtttgtagaa 5102097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 8038242 - 8038174
Alignment:
Q  139 tggtaatttcattcttctttcacctt-ggtaatgtagacgagataaggttgcccgtttgtagaattatc 206  Q
    |||||| || |||||||||||| ||| |||||||||||||||| | |||||||||||||||||| ||||    
T  8038242 tggtaactttattcttctttcatctttggtaatgtagacgagacagggttgcccgtttgtagaactatc 8038174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 20175244 - 20175173
Alignment:
Q  131 aattagtctggtaatttcattcttctttca-ccttggtaatgtagacgagataaggttgcccgtttgtagaa 201  Q
    |||||| || |||| ||||||||||||||| ||||||||| |||||||||||  ||||| ||||||||||||    
T  20175244 aattagcctagtaacttcattcttctttcatccttggtaaggtagacgagatggggttgtccgtttgtagaa 20175173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 2504865 - 2504812
Alignment:
Q  149 attcttctttca-ccttggtaatgtagacgagataaggttgcccgtttgtagaa 201  Q
    |||||||||||| ||||||||| |||||||||||| |||| ||| |||||||||    
T  2504865 attcttctttcatccttggtaaggtagacgagatatggtttcccatttgtagaa 2504812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 2564512 - 2564472
Alignment:
Q  161 ccttggtaatgtagacgagataaggttgcccgtttgtagaa 201  Q
    ||||||||| |||||||||||| ||||||| ||||||||||    
T  2564512 ccttggtaaggtagacgagatagggttgcctgtttgtagaa 2564472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 3327047 - 3327087
Alignment:
Q  161 ccttggtaatgtagacgagataaggttgcccgtttgtagaa 201  Q
    ||||||||| |||||||||||| ||||||| ||||||||||    
T  3327047 ccttggtaaggtagacgagatatggttgcctgtttgtagaa 3327087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 26134230 - 26134270
Alignment:
Q  161 ccttggtaatgtagacgagataaggttgcccgtttgtagaa 201  Q
    ||||||||| |||||||||||| ||||| ||||||||||||    
T  26134230 ccttggtaaggtagacgagatatggttgtccgtttgtagaa 26134270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 10504298 - 10504213
Alignment:
Q  117 tacttcatgatttaaattagtctggtaatttcattcttctttcacc-ttggtaatgtagacgagataaggttgcccgtttgtagaa 201  Q
    |||||||||| |||||| ||||  |||| ||| ||||||||||| | ||||||| |||||||||||| |||||||| |||||||||    
T  10504298 tacttcatgacttaaatcagtcgagtaacttcgttcttctttcatcattggtaaggtagacgagatagggttgcccctttgtagaa 10504213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 24119143 - 24119226
Alignment:
Q  119 cttcatgatttaaattagtctggtaatttcattcttctttca-ccttggtaatgtagacgagataaggttgcccgtttgtagaa 201  Q
    ||||||||||||||| || || |||| |||  | |||||||| || |||||| |||||||||||| ||||||||||||||||||    
T  24119143 cttcatgatttaaatcagcctagtaacttcgattttctttcatccctggtaaggtagacgagatagggttgcccgtttgtagaa 24119226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 17972858 - 17972805
Alignment:
Q  149 attcttctttca-ccttggtaatgtagacgagataaggttgcccgtttgtagaa 201  Q
    ||||||||| || ||||||| | ||||||||||||||||||||||||| |||||    
T  17972858 attcttcttacatccttggtgaggtagacgagataaggttgcccgtttttagaa 17972805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 45265009 - 45265062
Alignment:
Q  149 attcttctttca-ccttggtaatgtagacgagataaggttgcccgtttgtagaa 201  Q
    |||||||||||| ||||||||| |||||||||||| | ||| ||||||||||||    
T  45265009 attcttctttcatccttggtaaagtagacgagatatgattggccgtttgtagaa 45265062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 12590308 - 12590366
Alignment:
Q  142 taatttcattcttctttcaccttggtaatgtagacgagataaggttgcccgtttgtagaa 201  Q
    |||||| |||||| |||| ||||  ||| |||||||||||||||||||||||||||||||    
T  12590308 taattttattctt-tttcccctttataaggtagacgagataaggttgcccgtttgtagaa 12590366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 25939810 - 25939751
Alignment:
Q  118 acttcatgatttaaattagtctggtaatttcattcttctttcaccttggtaatgtagacg 177  Q
    ||||||||| |||||| ||||  |||||| |||||| ||||||||||||||| |||||||    
T  25939810 acttcatgacttaaataagtccagtaattccattctcctttcaccttggtaaggtagacg 25939751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 12950511 - 12950551
Alignment:
Q  161 ccttggtaatgtagacgagataaggttgcccgtttgtagaa 201  Q
    ||||||||| |||||||||||| || |||||||||||||||    
T  12950511 ccttggtaaggtagacgagatagggctgcccgtttgtagaa 12950551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 20533496 - 20533549
Alignment:
Q  149 attcttctttca-ccttggtaatgtagacgagataaggttgcccgtttgtagaa 201  Q
    ||||||||| || ||||||||||||||| |||||| |||||||| |||||||||    
T  20533496 attcttcttacatccttggtaatgtagatgagatatggttgcccatttgtagaa 20533549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 17337279 - 17337319
Alignment:
Q  161 ccttggtaatgtagacgagataaggttgcccgtttgtagaa 201  Q
    |||| |||| |||||||||||||||||| ||||||||||||    
T  17337279 ccttcgtaaggtagacgagataaggttgtccgtttgtagaa 17337319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 17830785 - 17830733
Alignment:
Q  146 ttcattcttctttca-ccttggtaatgtagacgagataaggttgcccgtttgt 197  Q
    ||||||||||||||| || |||| | |||||||||||| ||||||||||||||    
T  17830785 ttcattcttctttcatccgtggtgaggtagacgagatatggttgcccgtttgt 17830733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 21302560 - 21302520
Alignment:
Q  161 ccttggtaatgtagacgagataaggttgcccgtttgtagaa 201  Q
    ||||||||| |||||||||||| |||||| |||||||||||    
T  21302560 ccttggtaaggtagacgagatagggttgctcgtttgtagaa 21302520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University