View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20521_low_4 (Length: 464)

Name: NF20521_low_4
Description: NF20521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20521_low_4
NF20521_low_4
[»] chr1 (9 HSPs)
chr1 (63-454)||(12774750-12775141)
chr1 (141-454)||(12804511-12804824)
chr1 (140-454)||(50788818-50789132)
chr1 (133-454)||(42286930-42287251)
chr1 (140-355)||(4160289-4160504)
chr1 (141-365)||(36989242-36989466)
chr1 (141-355)||(31644058-31644272)
chr1 (141-340)||(28496106-28496305)
chr1 (19-49)||(12775163-12775193)
[»] chr8 (2 HSPs)
chr8 (140-355)||(5788722-5788937)
chr8 (159-365)||(33186637-33186843)
[»] chr2 (3 HSPs)
chr2 (141-278)||(40040778-40040915)
chr2 (141-436)||(42898129-42898424)
chr2 (140-343)||(38895856-38896059)
[»] chr4 (2 HSPs)
chr4 (141-298)||(22085506-22085663)
chr4 (139-364)||(30518146-30518371)
[»] chr7 (2 HSPs)
chr7 (139-307)||(40749350-40749518)
chr7 (159-271)||(44150818-44150930)
[»] chr3 (1 HSPs)
chr3 (156-325)||(52248370-52248539)


Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 63 - 454
Target Start/End: Complemental strand, 12775141 - 12774750
Alignment:
Q  63 agattgcattaacaaaaatcgatagcgaaaaaactcgcagtagaaaaattggaactgatttattaggtatatgtttattacctggagaagagagtgccac 162  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12775141 agattgcattaacaaaaatcgatagcgaaaaaactcgcaatagaaaaattggaactgatttattaggtatatgtttattacctggagaagagagtgccac 12775042  T
Q  163 agtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaacacttttcacacttccatttttt 262  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12775041 agtcacatctatactccttagtaccacaagttttagaatgagctttccaatcagattgaacagcatacttcttagaacacttttcacacttccatttttt 12774942  T
Q  263 ctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacacatgttggttctggacacaaataa 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12774941 ctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcaccaagagcccttgaagggtcatggtgaacacatgttggttctggacacaaataa 12774842  T
Q  363 acctttctctttggctctttgttactcttttgctttagcttccaaggcaaattgtgtcctcttctatgtagttgtaaattttgctccctttg 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12774841 acctttctctttggctctttgttactcttttgctttagcttccaaggcaaattgtgtcctcttctatgtagttgtaaattttgctccctttg 12774750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 141 - 454
Target Start/End: Original strand, 12804511 - 12804824
Alignment:
Q  141 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 240  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12804511 taccttgagaagagagtgccacagtcacatctatactccctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 12804610  T
Q  241 acttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacaca 340  Q
    |||||||||| ||||| ||||||||||||||||||||| || |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12804611 acttttcacatttccactttttctcaccatgctttctagaaaagtgcttcttaattccagtgaggtcaccaagagcccttgaagggtcatggtgaacaca 12804710  T
Q  341 tgttggttctggacacaaataaacctttctctttggctctttgttactcttttgctttagcttccaaggcaaattgtgtcctcttctatgtagttgtaaa 440  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12804711 tgttggttctggacacaaataaacctttctctttggctctttgttactcttttgctttagcttccaaggcaaattgtgtcctcttctatgtagttgtaaa 12804810  T
Q  441 ttttgctccctttg 454  Q
    ||||||||||||||    
T  12804811 ttttgctccctttg 12804824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 140 - 454
Target Start/End: Original strand, 50788818 - 50789132
Alignment:
Q  140 ttacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaa 239  Q
    |||||||||||||||||||||||||||||| ||||| ||  | || ||||||||||||||||| || ||||||||||||||||||||||| ||||||||     
T  50788818 ttacctggagaagagagtgccacagtcacacctatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcatacttcttagag 50788917  T
Q  240 cacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacac 339  Q
    ||||| |||||||||||||| ||||||||||| || | | | |||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||| |    
T  50788918 cacttatcacacttccatttcttctcaccatgtttgcgagagtagtgtttcttaatcccagtgaggtcaccaagtgcccttgaagggtcatgatgaacgc 50789017  T
Q  340 atgttggttctggacacaaataaacctttctctttggctctttgttactcttttgctttagcttccaaggcaaattgtgtcctcttctatgtagttgtaa 439  Q
    |||| || || ||||||| ||||||||||||||| || |||||  || |||| ||||| |||||||||||||| |||||||||||||| || || ||||     
T  50789018 atgtgggctcaggacacagataaacctttctcttaggttcttttgtagtcttctgcttaagcttccaaggcaagttgtgtcctcttctgtgaagctgtag 50789117  T
Q  440 attttgctccctttg 454  Q
    ||||||||| |||||    
T  50789118 attttgctctctttg 50789132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 133 - 454
Target Start/End: Complemental strand, 42287251 - 42286930
Alignment:
Q  133 atgtttattacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatattt 232  Q
    |||||| |||||| |||||||| |||||||| ||||||||||| ||  |||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  42287251 atgtttgttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccagtcagattgaacagcatattt 42287152  T
Q  233 cttagaacacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatgg 332  Q
    ||| || || |||||||| ||||| || |||||||| ||||| | | |  | || || ||||||||||| || || || | ||| ||||||||||| ||     
T  42287151 ctttgagcatttttcacatttccacttcttctcaccgtgcttacgagagaaatgctttttaattccagttagatctcctaaagctcttgaagggtcgtga 42287052  T
Q  333 tgaacacatgttggttctggacacaaataaacctttctctttggctctttgttactcttttgctttagcttccaaggcaaattgtgtcctcttctatgta 432  Q
    || || ||||| || || ||||||||||||||||||||| |||||||||||||   ||||||||||||||||||||| | |||||||||||||||||| |    
T  42287051 tggacgcatgtgggctcaggacacaaataaacctttctccttggctctttgttggacttttgctttagcttccaaggaagattgtgtcctcttctatgaa 42286952  T
Q  433 gttgtaaattttgctccctttg 454  Q
    |||| | |||||||||||||||    
T  42286951 gttgaagattttgctccctttg 42286930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 140 - 355
Target Start/End: Complemental strand, 4160504 - 4160289
Alignment:
Q  140 ttacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaa 239  Q
    |||||| |||||||| || |||||||||||  ||||||| ||||| |||||| | || ||||||||||||||||| || ||||| ||||||   ||||||    
T  4160504 ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaa 4160405  T
Q  240 cacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacac 339  Q
    || || ||||||||||| || |||||||| ||||| || ||| |||| ||||| |||||||| ||||| ||||| |||||||||||||||||||||||||    
T  4160404 catttctcacacttccacttcttctcaccgtgcttcctgaaaaagtgcttcttgattccagttaggtcaccaagtgcccttgaagggtcatggtgaacac 4160305  T
Q  340 atgttggttctggaca 355  Q
    ||||||| ||||||||    
T  4160304 atgttggctctggaca 4160289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 141 - 365
Target Start/End: Complemental strand, 36989466 - 36989242
Alignment:
Q  141 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 240  Q
    |||||||| ||||  || |||||||||||| | || ||| | ||||||||  | || |||||||||||||||||||||||||||||||||||||||||||    
T  36989466 tacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaac 36989367  T
Q  241 acttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacaca 340  Q
    |||| ||||| ||||| ||||||||||||||||||||| || |||| || ||||||||||| || || ||||| || |||| ||||| |||||| |||||    
T  36989366 acttatcacatttccactttttctcaccatgctttctacaaaagtgctttttaattccagtaagatcaccaagtgctcttgcagggttatggtgtacaca 36989267  T
Q  341 tgttggttctggacacaaataaacc 365  Q
    ||  ||||| ||||| | |||||||    
T  36989266 tgaaggttcaggacaaacataaacc 36989242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 141 - 355
Target Start/End: Original strand, 31644058 - 31644272
Alignment:
Q  141 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 240  Q
    |||||||| || || || ||||| |||||| |||| ||   ||||||||| || ||||| ||||||||||||||||| |||||||||||  |||| || |    
T  31644058 tacctggaaaaaagggtaccacaatcacatttatattctcgagtaccacaggttttagagtgagctttccaatcagaatgaacagcatagatctttgagc 31644157  T
Q  241 acttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacaca 340  Q
    |||| ||||| |||||||||||||||||||| ||||||  ||| |||||||||||||| || || || ||||||||||||||||||| ||| ||||||||    
T  31644158 acttatcacatttccattttttctcaccatgttttctactataatgtttcttaattcctgtaagatctccaagagcccttgaagggttatgatgaacaca 31644257  T
Q  341 tgttggttctggaca 355  Q
    ||  || ||||||||    
T  31644258 tgaaggctctggaca 31644272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 141 - 340
Target Start/End: Original strand, 28496106 - 28496305
Alignment:
Q  141 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 240  Q
    ||||| |||||||| ||||||||||||||| | || ||  | |||||||| || || | ||||||||||||||||||||| || |||||||| || ||||    
T  28496106 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 28496205  T
Q  241 acttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacaca 340  Q
    | |||||||| ||||| || |||||||| |||||||||  | |||| || || || || |||||||| ||||| || ||||||||||||||||| |||||    
T  28496206 atttttcacatttccacttcttctcaccgtgctttctactaaagtgcttttttatacctgtgaggtcaccaagtgctcttgaagggtcatggtggacaca 28496305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 49
Target Start/End: Complemental strand, 12775193 - 12775163
Alignment:
Q  19 attgcgaccacaatttaaaccatgctatcaa 49  Q
    |||||||||||||||||||||||||||||||    
T  12775193 attgcgaccacaatttaaaccatgctatcaa 12775163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 140 - 355
Target Start/End: Original strand, 5788722 - 5788937
Alignment:
Q  140 ttacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaa 239  Q
    |||||| |||||||| || ||||||||||||||||| ||  |||| |||||||| || |||||||||||||||||||||||||||||||||||||| |||    
T  5788722 ttaccttgagaagagggttccacagtcacatctatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttgaa 5788821  T
Q  240 cacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacac 339  Q
    ||||||||||| ||||| || |||||||||||||||||  || |||||||||| |||||||| |  || || |  || ||||| || ||||| || ||||    
T  5788822 cacttttcacatttccacttcttctcaccatgctttctggaaaagtgtttcttgattccagtcaaatcccctaatgctcttgatggatcatgatgcacac 5788921  T
Q  340 atgttggttctggaca 355  Q
    | ||||||||||||||    
T  5788922 aagttggttctggaca 5788937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 159 - 365
Target Start/End: Complemental strand, 33186843 - 33186637
Alignment:
Q  159 ccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaacacttttcacacttccatt 258  Q
    ||||| |||||| |||||||  ||| |||||||   ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |    
T  33186843 ccacaatcacatttatactctctagaaccacaaactttagagtgagctttccaatcagattgaacagcatatttcttagaacatttctcacatttccact 33186744  T
Q  259 ttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacacatgttggttctggacacaa 358  Q
    ||||||||||||| |||||| || |||| || || || ||||| |  || || | ||| || ||||| ||||| |||||||| || ||||| ||||| |     
T  33186743 ttttctcaccatgttttctacaaaagtgcttttttatcccagttaaatcacctaaagctctagaaggatcatgatgaacacaagtaggttcaggacaaac 33186644  T
Q  359 ataaacc 365  Q
    |||||||    
T  33186643 ataaacc 33186637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 141 - 278
Target Start/End: Complemental strand, 40040915 - 40040778
Alignment:
Q  141 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 240  Q
    ||||||||||| || |||||||| |||||||| ||||| ||||| |||||| |||||  |||||| ||||||||||||||||| ||||||||||||||||    
T  40040915 tacctggagaatagtgtgccacaatcacatctgtactctttagtgccacaaatcttactatgagccttccaatcagattgaactgcatatttcttagaac 40040816  T
Q  241 acttttcacacttccattttttctcaccatgctttcta 278  Q
    |||| ||||||||||| || |||||||| |||||||||    
T  40040815 acttatcacacttccacttcttctcaccgtgctttcta 40040778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 141 - 436
Target Start/End: Complemental strand, 42898424 - 42898129
Alignment:
Q  141 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 240  Q
    ||||| |||||||| || |||||||||||||| || ||  | || ||||| || || || ||||||||||| || |||||||| ||||| |||||||| |    
T  42898424 taccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagc 42898325  T
Q  241 acttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacaca 340  Q
    |||| ||||| ||||| || |||||||| ||||||||  |  |||| ||||| || ||||| ||||| || |  || ||||| ||||||||||| |||||    
T  42898324 acttgtcacatttccacttcttctcaccgtgctttctgcagaagtgcttcttgataccagttaggtcccccaaggctcttgatgggtcatggtgcacaca 42898225  T
Q  341 tgttggttctggacacaaataaacctttctctttggctctttgttactcttttgctttagcttccaaggcaaattgtgtcctcttctatgtagttg 436  Q
     |||||||||||||||| |||||| ||  || ||  ||| ||| |  |  ||||||| | |||||| |||||||||||||||||| |||| |||||    
T  42898224 agttggttctggacacacataaactttcttccttatctcattgcttgttctttgcttcaacttccatggcaaattgtgtcctcttttatgaagttg 42898129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 140 - 343
Target Start/End: Original strand, 38895856 - 38896059
Alignment:
Q  140 ttacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaa 239  Q
    |||||| || |||| ||||||||| |||||| | || ||  |||||||||||||||| || || ||||||||||| ||||||||||||||    || ||     
T  38895856 ttaccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgag 38895955  T
Q  240 cacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacac 339  Q
    ||||| ||||||||||| || |||||||| || || ||| || |||| ||||| || ||||| |  || || | |||||||||||| | ||  |||||||    
T  38895956 cacttctcacacttccacttcttctcaccgtgtttcctacaaaagtgcttctttatcccagttaaatctcccaaagcccttgaaggatgattatgaacac 38896055  T
Q  340 atgt 343  Q
    ||||    
T  38896056 atgt 38896059  T

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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 141 - 298
Target Start/End: Original strand, 22085506 - 22085663
Alignment:
Q  141 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 240  Q
    ||||||||||| |  |||||||| |||||| | |||||  |||| |||||| ||||   |||||||||||||||||||||||| ||||||||||| ||||    
T  22085506 tacctggagaaaattgtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaac 22085605  T
Q  241 acttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattcc 298  Q
    |||||||||||||||| || ||||||||||| ||||||  ||| |||||||| |||||    
T  22085606 acttttcacacttccacttcttctcaccatgttttctactataatgtttctttattcc 22085663  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 139 - 364
Target Start/End: Original strand, 30518146 - 30518371
Alignment:
Q  139 attacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttaga 238  Q
    ||||||| || |||| ||| |||||||||||| | || ||  |||||||||| || || || |||||||||||||| || |||||||||||    || ||    
T  30518146 attaccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttga 30518245  T
Q  239 acacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaaca 338  Q
     ||||| ||||||||||| || || ||||||||||||||| || |||| || || || ||||| | ||| ||||| ||||||||||| |||||||| |||    
T  30518246 gcacttctcacacttccacttcttttcaccatgctttctacaaaagtgcttttttatcccagttaagtcaccaagtgcccttgaaggatcatggtggaca 30518345  T
Q  339 catgttggttctggacacaaataaac 364  Q
    || |||   |||||||||| ||||||    
T  30518346 caagttttctctggacacacataaac 30518371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 139 - 307
Target Start/End: Complemental strand, 40749518 - 40749350
Alignment:
Q  139 attacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttaga 238  Q
    ||||||| |||||||| || ||||| |||||  |||| ||  ||||||||||||| ||||  |||||||||||||||||||| || ||||||||||| ||    
T  40749518 attaccttgagaagagtgtaccacaatcacacttatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcatatttcttgga 40749419  T
Q  239 acacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtc 307  Q
    |||||| |||||||||||||| ||||| ||||| ||||||  | | |||||||| ||||| ||||||||    
T  40749418 acacttatcacacttccatttcttctcgccatgttttctactaaaatgtttctttattccggtgaggtc 40749350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 271
Target Start/End: Original strand, 44150818 - 44150930
Alignment:
Q  159 ccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaacacttttcacacttccatt 258  Q
    ||||| |||||| | || ||| ||||||||||||| ||    ||||| |||||||| ||||||||||||||| | ||||| ||||| ||||| |||||||    
T  44150818 ccacaatcacatttgtattccctagtaccacaagttttctggtgagccttccaatctgattgaacagcatatcttttagagcacttgtcacatttccatt 44150917  T
Q  259 ttttctcaccatg 271  Q
    | |||||||||||    
T  44150918 tcttctcaccatg 44150930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 156 - 325
Target Start/End: Original strand, 52248370 - 52248539
Alignment:
Q  156 gtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaacacttttcacacttcc 255  Q
    |||||||| |||||| |||||||  |||| |||||  ||||   |||| ||||| ||||| |||   |||| ||||| ||||||||   |||||| ||||    
T  52248370 gtgccacaatcacatttatactctctagttccacagctcttcatatgaactttcaaatcacatttcgcagcgtattttttagaacaacgttcacatttcc 52248469  T
Q  256 attttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagg 325  Q
    |||| |||||||||||||||||| || |||| || || | ||| |||||||| || || || ||||||||    
T  52248470 atttcttctcaccatgctttctacaaaagtgctttttcactcctgtgaggtcaccgagtgctcttgaagg 52248539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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