View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20521_low_5 (Length: 397)
Name: NF20521_low_5
Description: NF20521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20521_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 16 - 380
Target Start/End: Complemental strand, 2016054 - 2015690
Alignment:
| Q |
16 |
atgcagtccaaaatccaataccaaatcaagaaaagagatcataatgatcattgcaatgagtgagtacaacacattctattattgatgcattcataacatg |
115 |
Q |
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| T |
2016054 |
atgcagtccaaaatccaataccaaatcaagaaaagagatcataatgatcattgcaatgagtgagtacaacacattctattattgatgcattcataacatg |
2015955 |
T |
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| Q |
116 |
ataatgtcaaacaattttattatcacgatattgttaaaattcgaaaggtgtttcattggcaaccaacactactattccgtgttatagactgttgttctga |
215 |
Q |
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| T |
2015954 |
ataatgtcaaacaattttattatcacgatattgttaaaattcgaaaggtgtttcattggcaaccaacactactattccgtgttatagactgttgttctga |
2015855 |
T |
|
| Q |
216 |
attaagactcatttacccaaggcattccttcaagaccaaaaaagtggtattttgagattttgactaatatcgttaacataaattgacttgaaacatcaac |
315 |
Q |
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| T |
2015854 |
aataagactcatttacccaaggcattccttcaagaccaaaaaagtggtatttagagattttgactaatgtcgttaacataaattgacttgaaacatcaac |
2015755 |
T |
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| Q |
316 |
aagctaggaagagcagaaagaaaattatcatgtttccatttatgttcaggtgtcagcatgagcct |
380 |
Q |
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| T |
2015754 |
aagctaggaagagcagaaagaaaattatcatgtttccatttatgttcaggtgtcagcatgagcct |
2015690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 40578726 - 40578805
Alignment:
| Q |
16 |
atgcagtccaaaatccaataccaaatcaagaaaagagatcataatgatcattgcaatgagtgagtacaacacattctatt |
95 |
Q |
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| T |
40578726 |
atgcagtccaaaatccagtaccaaatcaagtaaagagatcatgttaatcattgcactgagtgagtacaacacgttctatt |
40578805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 40596863 - 40596942
Alignment:
| Q |
16 |
atgcagtccaaaatccaataccaaatcaagaaaagagatcataatgatcattgcaatgagtgagtacaacacattctatt |
95 |
Q |
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|||||||| |||||||| |||||||||||| |||||| |||| || ||| |||| |||||||||||||| ||||||||| |
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| T |
40596863 |
atgcagtcaaaaatccattaccaaatcaaggaaagagtacatattggtcactgcattgagtgagtacaacgcattctatt |
40596942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 40572285 - 40572364
Alignment:
| Q |
16 |
atgcagtccaaaatccaataccaaatcaagaaaagagatcataatgatcattgcaatgagtgagtacaacacattctatt |
95 |
Q |
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||||||||||||||||| |||||||||||| ||||| ||||| | | || ||| |||||||||||||||| ||||||| |
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| T |
40572285 |
atgcagtccaaaatccagtaccaaatcaaggaaagatatcatgttaactatcgcattgagtgagtacaacacgttctatt |
40572364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 40567698 - 40567798
Alignment:
| Q |
16 |
atgcagtccaaaatccaataccaaatcaagaaaagagatcataatgatcattgcaatgagtgagtacaaca---cattctattattgatgcattcataac |
112 |
Q |
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||||||| ||||||||| ||||||| ||| |||||||| ||| |||||||| || ||||||||||||||| || |||||| | ||| |||||||||| |
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| T |
40567698 |
atgcagttcaaaatccagtaccaaacaaaggaaagagattatattgatcatttcattgagtgagtacaacaacacactctattctggattcattcataac |
40567797 |
T |
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| Q |
113 |
a |
113 |
Q |
| |
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| T |
40567798 |
a |
40567798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 40567961 - 40568002
Alignment:
| Q |
299 |
tgacttgaaacatcaacaagctaggaagagcagaaagaaaat |
340 |
Q |
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||||||||||||||||||||||| ||| ||||||||| |||| |
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| T |
40567961 |
tgacttgaaacatcaacaagctacgaaaagcagaaaggaaat |
40568002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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