View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20521_low_7 (Length: 361)
Name: NF20521_low_7
Description: NF20521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20521_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 3037048 - 3037392
Alignment:
| Q |
1 |
tggccaacttcagaagaagaatttacaattatgtttacgaaagatacttgcaaagtttatcatgatgggagggggatgattatgtcaacacagatgagcg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3037048 |
tggccaacttcagaagaagaatttacaattatgtttacaaaagatacttgcaaagtttatcatgataggagggggatgattatgtcaacacagatgagca |
3037147 |
T |
|
| Q |
101 |
ccaatagaatgtttgtcatctctgcaccagttattgttcctgaatgtttgaaaattgaaaaatgtgaaaatgctaaaaatatgactccagaggaagcatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
3037148 |
ccaatagaatgtttgtcatctctgcaccagttattgttcctgaatgtttgaaaattgaaaaatgtgaagatgctaaaaatatgactctagaggaagcatg |
3037247 |
T |
|
| Q |
201 |
gagtggtgtgaaacctttagtgcatcattttagagtatttggatgtattgcatattcacatgttttagattctcagagagagaagttggatgataagagt |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3037248 |
gagtggtgtgaaaccttcagtgcatcattttagagtatttggatgtattgcatattcacatgttttagattctcagagagagaagttggatgataagagt |
3037347 |
T |
|
| Q |
301 |
actaagtgtannnnnnnaggtttaactgaagaatcaaaagcttac |
345 |
Q |
| |
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|||||||||| |||||||| ||||||||||||||||||| |
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| T |
3037348 |
actaagtgtatttttttaggtttaagtgaagaatcaaaagcttac |
3037392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 20542727 - 20542899
Alignment:
| Q |
5 |
caacttcagaagaagaattta-caattatgtttacgaaagatacttgcaaagtttatcatgatgggagggggatgattatgtcaacacagatgagcgcca |
103 |
Q |
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| T |
20542727 |
caacttcagcagaagaatctaacaattgtttttaagaaagatacttgcaaagtatatcatgaggagaggggtttgataatgtcaacacagatgagcacca |
20542826 |
T |
|
| Q |
104 |
atagaatgtttgtcatctctgcaccagttattgttcctgaatgtttgaaaattgaaaaatgtgaaaatgctaa |
176 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| |
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| T |
20542827 |
atagaatgtttatcatctctgcaccagttattgttcctgaatgtttgaaaattgagatatgtgaagatgctaa |
20542899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 20543541 - 20543597
Alignment:
| Q |
189 |
agaggaagcatggagtggtgtgaaacctttagtgcatcattttagagtatttggatg |
245 |
Q |
| |
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|||||||||||||||||||||||||||| ||| || || |||||||| |||||||| |
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|
| T |
20543541 |
agaggaagcatggagtggtgtgaaacctacagttcaacactttagagtttttggatg |
20543597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 40612584 - 40612420
Alignment:
| Q |
5 |
caacttcagaagaagaattta-caattatgtttacgaaagatacttgcaaagtttatcatgatgggagggggatgattatgtcaacacagatgagcgcca |
103 |
Q |
| |
|
||||||||| |||||||| || ||||| | |||| |||||||||||||||||| |||||||| | |||||| |||| |||||||||||||||||| ||| |
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| T |
40612584 |
caacttcagcagaagaatctaacaattgtttttaagaaagatacttgcaaagtatatcatgaggagaggggtttgataatgtcaacacagatgagcacca |
40612485 |
T |
|
| Q |
104 |
atagaatgtttgtcatctctgcaccagttattgttcctgaatgtttgaaaattgaaaaatgtgaa |
168 |
Q |
| |
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||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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|
| T |
40612484 |
atagaatgtttatcatctctgcaccatttattgttcctgaatgtctgaaaattgaaaaatgtgaa |
40612420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 25 - 176
Target Start/End: Complemental strand, 27982037 - 27981886
Alignment:
| Q |
25 |
acaattatgtttacgaaagatacttgcaaa-gtttatcatgatgggagggggatgattatgtcaacacagatgagcgccaatagaatgtttgtcatctct |
123 |
Q |
| |
|
||||||||||||| |||||||||||| ||| ||||||||||||| |||||| || |||||||||||||||||||| ||||||||||||| | |||||| |
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|
| T |
27982037 |
acaattatgtttaagaaagatacttgaaaacgtttatcatgatgagaggggaatagttatgtcaacacagatgagcaccaatagaatgttcatgatctct |
27981938 |
T |
|
| Q |
124 |
gcaccagttattgttcctgaatgtttgaaaattgaaaaatgtgaaaatgctaa |
176 |
Q |
| |
|
|||||| |||||||||||||| |||| |||||||||||||||||| ||||||| |
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|
| T |
27981937 |
gcaccaattattgttcctgaaagttt-aaaattgaaaaatgtgaagatgctaa |
27981886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 25 - 176
Target Start/End: Complemental strand, 28039339 - 28039188
Alignment:
| Q |
25 |
acaattatgtttacgaaagatacttgcaaa-gtttatcatgatgggagggggatgattatgtcaacacagatgagcgccaatagaatgtttgtcatctct |
123 |
Q |
| |
|
||||||||||||| |||||||||||| ||| ||||||||||||| |||||| || |||||||||||||||||||| ||||||||||||| | |||||| |
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| T |
28039339 |
acaattatgtttaagaaagatacttgaaaacgtttatcatgatgagaggggaatagttatgtcaacacagatgagcaccaatagaatgttcatgatctct |
28039240 |
T |
|
| Q |
124 |
gcaccagttattgttcctgaatgtttgaaaattgaaaaatgtgaaaatgctaa |
176 |
Q |
| |
|
|||||| |||||||||||||| |||| |||||||||||||||||| ||||||| |
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| T |
28039239 |
gcaccaattattgttcctgaaagttt-aaaattgaaaaatgtgaagatgctaa |
28039188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 40611772 - 40611706
Alignment:
| Q |
179 |
atatgactccagaggaagcatggagtggtgtgaaacctttagtgcatcattttagagtatttggatg |
245 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||| ||| || || |||||||| |||||||| |
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|
| T |
40611772 |
atatgactccggaggaggcatggagtggtgtgaaacctacagttcaacactttagagtttttggatg |
40611706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 16863773 - 16863947
Alignment:
| Q |
5 |
caacttcagaagaagaattta-caattatgtttacgaaagatacttgcaaagtttatcatgatgggagggggatgattatgtcaacacagatgagcgcca |
103 |
Q |
| |
|
||||||||| |||||| |||| ||||| | |||| ||||||||||||||| || |||||||| | |||||| |||||||||||||||| |||||| ||| |
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|
| T |
16863773 |
caacttcagtagaagagtttaacaattgtttttaagaaagatacttgcaaggtatatcatgaagagaggggtttgattatgtcaacacaaatgagcacca |
16863872 |
T |
|
| Q |
104 |
atagaatgtttgtcatctctgcaccagttattgttcctgaatgtttgaaaattgaaaaatgtgaaaatgctaaaa |
178 |
Q |
| |
|
||| ||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||| ||||| |
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| T |
16863873 |
atataatgtttatcatctctgcaccagtcattgttcctgaatgtttaaaaattgaaaaatgtgaatatgttaaaa |
16863947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 310
Target Start/End: Original strand, 16864590 - 16864701
Alignment:
| Q |
199 |
tggagtggtgtgaaacctttagtgcatcattttagagtatttggatgtattgcatattcacatgttttagattctcagagagagaagttggatgataaga |
298 |
Q |
| |
|
|||||||||||| |||||| ||| | |||||||| | |||||||||||| | ||| ||||| | ||| |||||||| ||||||| |||||||||| |
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|
| T |
16864590 |
tggagtggtgtgcaaccttcagtaaagtattttagaatttttggatgtatttcttatgttcatgtgtcagactctcagaggaagaagttagatgataaga |
16864689 |
T |
|
| Q |
299 |
gtactaagtgta |
310 |
Q |
| |
|
|||||| ||||| |
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|
| T |
16864690 |
gtactaggtgta |
16864701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 25 - 175
Target Start/End: Original strand, 20529426 - 20529577
Alignment:
| Q |
25 |
acaattatgtttacgaaagatacttgcaaagttta-tcatgatgggagggggatgattatgtcaacacagatgagcgccaatagaatgtttgtcatctct |
123 |
Q |
| |
|
|||||| |||||| ||||||||| ||||| ||| | |||||||| |||||| ||||||| ||||||||| |||||| ||| ||||||||| |||| ||| |
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|
| T |
20529426 |
acaattgtgtttaagaaagatacctgcaaggttcaatcatgatgagaggggaatgattaagtcaacacaaatgagcaccactagaatgttcatcatatct |
20529525 |
T |
|
| Q |
124 |
gcaccagttattgttcctgaatgtttgaaaattgaaaaatgtgaaaatgcta |
175 |
Q |
| |
|
|||||||||||||| | |||||| || || ||||||||||||||| |||||| |
|
|
| T |
20529526 |
gcaccagttattgtccatgaatgcttaaagattgaaaaatgtgaagatgcta |
20529577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 174 - 300
Target Start/End: Original strand, 20530206 - 20530332
Alignment:
| Q |
174 |
taaaaatatgactccagaggaagcatggagtggtgtgaaacctttagtgcatcattttagagtatttggatgtattgcatattcacatgttttagattct |
273 |
Q |
| |
|
|||| |||||||||| || ||||||||||||||||||||||| | |||||||||||| | ||| ||||| ||||||||||| ||||| || |||| || |
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|
| T |
20530206 |
taaagatatgactcccgaagaagcatggagtggtgtgaaaccatcagtgcatcatttcaaagtttttgggtgtattgcatactcacaagtgccagatgct |
20530305 |
T |
|
| Q |
274 |
cagagagagaagttggatgataagagt |
300 |
Q |
| |
|
|||||| ||||| |||||||||||||| |
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|
| T |
20530306 |
cagagaaagaagctggatgataagagt |
20530332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 10782947 - 10782911
Alignment:
| Q |
179 |
atatgactccagaggaagcatggagtggtgtgaaacc |
215 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
10782947 |
atatcactccagaagaagcatggagtggtgtgaaacc |
10782911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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