View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20522_high_1 (Length: 722)
Name: NF20522_high_1
Description: NF20522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20522_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 657; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 17 - 712
Target Start/End: Original strand, 10995951 - 10996649
Alignment:
| Q |
17 |
aatattctcaggaacactttcgacccaaggcaaacccttgataaaagtcttacatcgactttaagaagtaacatgactcttgttgttcatcaccatacac |
116 |
Q |
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| T |
10995951 |
aatattctcaggaacactttcgacccaaggcaaacccttgataaaagtcttacatcgactttaagaagtaacatgactcttgttgttcatcaccatacac |
10996050 |
T |
|
| Q |
117 |
tttgttgctcatcagtaacactgttgccactataacaaaggacgttaaggaaagcatttttaaattttttatcatagcaagtagaaattaatactcacaa |
216 |
Q |
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| T |
10996051 |
tttgttgctcatcagtaacactgttgccactataacaaaggacgttaaggaaagcatttttaaattttttatcataacaagtagaaattaatactcacaa |
10996150 |
T |
|
| Q |
217 |
tttaaatgcatgtgatccg---tgtaataaaattaaaaatatatgacattttacatcacggcagtatcgtggaagctgctagcatttggcaaggtcgaag |
313 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10996151 |
tttaaatgcatgtgatccggcgtgtaataaaattaaaaatatatgacattttacatcacggcagtatcgtggaagctgctagcatttggcaaggtcgaag |
10996250 |
T |
|
| Q |
314 |
acttttatagtcttcggatgaattttaatagatgttgatatgagtagatagatcaattatttgttctcgtagttgttacgtcctagcaccacatatagct |
413 |
Q |
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| T |
10996251 |
acttttatagtcttcggatgaattttaatagatgttgatatgagtagatagatcaattatttgttctcgtaggtgttacgtcctagcaccacatatagct |
10996350 |
T |
|
| Q |
414 |
tatcaaaaacaaaaataactggcaccacatatatagtgagagactcgcgtgttgcctgggcgtagaaaaagtttttccttatatcaaatttgataaagtt |
513 |
Q |
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| T |
10996351 |
tatcaaaaacaaaaataactggcaccacatatatagtgagagactcgcgtgttgcctgggcgtagaaaaagtttttccttatatcaaatttgataaagtt |
10996450 |
T |
|
| Q |
514 |
aatagtgtaaggtttctaaacaaaataaattatacaaaaatctaacctatgaaagtgataatattattttacagcaaataaataggtgagtcatgaaaag |
613 |
Q |
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| T |
10996451 |
aatagtgtaaggtttctaaacaaaataaattatacaaaaatctaacctatgaaagtgataatattattttcaagcacataaagaggttagtcatgaaaag |
10996550 |
T |
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| Q |
614 |
caaatgtattggacaatcatccacctaaactcttgcttgcagctcaaatttcagcattagttagtaaacttgcacatatgttaatatgatatgatgatg |
712 |
Q |
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| T |
10996551 |
caaatgtattggacaatcatccacctaaactcttgcttgcagctcaaatttcagcattagttagtaaacttgcacatatgttaatatgatatgatgatg |
10996649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 86 - 245
Target Start/End: Original strand, 10988573 - 10988732
Alignment:
| Q |
86 |
aacatgactcttgttgttcatcaccatacactttgttgctcatcagtaacactgttgccactataacaaaggacgttaaggaaagcatttttaaattttt |
185 |
Q |
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| T |
10988573 |
aacatgactcttgttgttcatcaccatacactttgtcgctcagtagcaacactactgccaccataacaaaggacgttaaggaaagcatttttgaattttt |
10988672 |
T |
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| Q |
186 |
tatcatagcaagtagaaattaatactcacaatttaaatgcatgtgatccgtgtaataaaa |
245 |
Q |
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| T |
10988673 |
tatcatagcaattagaaattcatactcacaatttaaatgcataagatccgtataataaaa |
10988732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 190 - 361
Target Start/End: Original strand, 10905727 - 10905898
Alignment:
| Q |
190 |
atagcaagtagaaattaatactcacaattta---aatgcatgtgatccgtgtaataaaattaaaaatatatgacattttacatcacggcagtatcgtgga |
286 |
Q |
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| T |
10905727 |
atagcaagtagaaatctatagtgacaatttattaaatgcatgagatccgtataataaaaataaaaatatattacattttacatcactgcagtaatgtgga |
10905826 |
T |
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| Q |
287 |
agctgctagcatttggcaaggtcgaagacttttatagtcttcggatgaattttaatagatgttgatatgagtaga |
361 |
Q |
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| T |
10905827 |
agctac---cttttggcaaggtcgaagacttttatagtcttcggatgaattttattaaatgttgatatgagtaga |
10905898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 11001593 - 11001661
Alignment:
| Q |
17 |
aatattctcaggaacactttcgacccaaggcaaacccttgataaaagtcttacatcgactttaagaagt |
85 |
Q |
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| T |
11001593 |
aatattctcaggaacactttcgacccaaggcaaacccttgataaaagtcttacatcgactttaagaagt |
11001661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 388 - 442
Target Start/End: Original strand, 10988766 - 10988820
Alignment:
| Q |
388 |
gttacgtcctagcaccacatatagcttatcaaaaacaaaaataactggcaccaca |
442 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
10988766 |
gttacgtactagcaccacatatatcttatcaaaaacaaaaataactagcaccaca |
10988820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 10975751 - 10975788
Alignment:
| Q |
86 |
aacatgactcttgttgttcatcaccatacactttgttg |
123 |
Q |
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| T |
10975751 |
aacatgactcatggtgttcatcaccatacactttgttg |
10975788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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