View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20522_high_10 (Length: 308)

Name: NF20522_high_10
Description: NF20522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20522_high_10
NF20522_high_10
[»] chr7 (3 HSPs)
chr7 (46-212)||(12804654-12804821)
chr7 (10-47)||(12804345-12804382)
chr7 (50-98)||(34561963-34562012)
[»] chr4 (7 HSPs)
chr4 (43-246)||(34453246-34453459)
chr4 (148-246)||(45891519-45891616)
chr4 (159-251)||(21808458-21808549)
chr4 (148-251)||(48666708-48666810)
chr4 (148-246)||(25766698-25766795)
chr4 (160-243)||(14264213-14264295)
chr4 (51-106)||(45891664-45891720)
[»] scaffold0527 (2 HSPs)
scaffold0527 (148-251)||(2337-2439)
scaffold0527 (148-251)||(10400-10502)
[»] chr2 (1 HSPs)
chr2 (23-99)||(26558532-26558612)
[»] scaffold0219 (2 HSPs)
scaffold0219 (148-209)||(4941-5002)
scaffold0219 (51-102)||(1804-1856)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 46 - 212
Target Start/End: Original strand, 12804654 - 12804821
Alignment:
Q  46 taagattttatttgattgttg-ttacattttcttactttaatatgtcataaatggtgtaattnnnnnnntgtttgccataaatgatgatttgactttgat 144  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||| |||||||||||||||    
T  12804654 taagattttatttgattgttggttacattttcttactttaatatgtcataaatggtgtaattaaaaaaatgtttgccataaatggtgatttgactttgat 12804753  T
Q  145 tgtttcaaccttgcattgccacatgtaacatttcctttgtattagattttgatatgtcatgtgtattg 212  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12804754 tgtttcaaccttgtattgccacatgtaacatttcctttgtattggattttgatatgtcatgtgtattg 12804821  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 12804345 - 12804382
Alignment:
Q  10 attatactcaccttgtaataataaaattcaatgaatta 47  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  12804345 attacactcaccttgtaataataaaattcaataaatta 12804382  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 34561963 - 34562012
Alignment:
Q  50 attttatttgattgtt-gttacattttcttactttaatatgtcataaatg 98  Q
    |||||||||||||||| |||||| ||| |||||||||||| |||||||||    
T  34561963 attttatttgattgttagttacactttgttactttaatatatcataaatg 34562012  T

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Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 43 - 246
Target Start/End: Original strand, 34453246 - 34453459
Alignment:
Q  43 aattaagattttatttgattgttgttacattttcttactttaatatgtcataaatggtgtaattnnnnnnnt----------gtttgccataaatgatga 132  Q
    |||||||||||||||||||||| ||||  ||||| |||||||||||||||||||||||||||||                  ||||||||||||||||||    
T  34453246 aattaagattttatttgattgtggttatgttttcgtactttaatatgtcataaatggtgtaattaacaaaaaaaaaaaaaaagtttgccataaatgatga 34453345  T
Q  133 tttgactttgattgtttcaaccttgcattgccacatgtaacatttcctttgtattagattttgatatgtcatgtgtattgtctcatttcatttatcctca 232  Q
    ||| ||| |||||| ||||||||||||||| ||| |||||| ||| |||||||||  |||||||||||||||| |||| ||||||||| | |||||||||    
T  34453346 tttaactatgattgcttcaaccttgcattgtcacgtgtaaccttttctttgtattgaattttgatatgtcatgcgtatggtctcattttacttatcctca 34453445  T
Q  233 aatgtatgtataga 246  Q
    | ||||||||||||    
T  34453446 actgtatgtataga 34453459  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 246
Target Start/End: Complemental strand, 45891616 - 45891519
Alignment:
Q  148 ttcaaccttgcattgccacatgtaacatttcctttgtattagattttgatatgtcatgtgtattgtctcatttcatttatcctcaaatgtatgtataga 246  Q
    ||||||||| |||||||||||||||| |||| |||  ||| |||||||||||||||| |||||||| |||||| |   || ||||||||||||||||||    
T  45891616 ttcaaccttacattgccacatgtaacttttcttttaaatttgattttgatatgtcatttgtattgt-tcattttaaacattctcaaatgtatgtataga 45891519  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 251
Target Start/End: Original strand, 21808458 - 21808549
Alignment:
Q  159 attgccacatgtaacatttcctttgtattagattttgatatgtcatgtgtattgtctcatttcatttatcctcaaatgtatgtatagaagatt 251  Q
    ||||||||||||||| ||||||||| ||| |||||||||||| |||||||||||| |||||| |   || ||||||||||| |||||| ||||    
T  21808458 attgccacatgtaacttttcctttgaatttgattttgatatgccatgtgtattgt-tcattttaaagattctcaaatgtatatatagaggatt 21808549  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 251
Target Start/End: Original strand, 48666708 - 48666810
Alignment:
Q  148 ttcaaccttgcattgccacatgtaacatttcctttgtattagattttgatatgtcatgtgtattgtctcatttcatttatcctcaaatgtatgtatagaa 247  Q
    ||||||||| |||||||||||||||| |||| |||  ||| |||||||||||||||||||| || | |||||| |   || ||||||||||||||||||     
T  48666708 ttcaaccttacattgccacatgtaacttttcttttaaatttgattttgatatgtcatgtgtgttat-tcattttaaagattctcaaatgtatgtatagat 48666806  T
Q  248 gatt 251  Q
    ||||    
T  48666807 gatt 48666810  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 246
Target Start/End: Original strand, 25766698 - 25766795
Alignment:
Q  148 ttcaaccttgcattgccacatgtaacatttcctttgtattagattttgatatgtcatgtgtattgtctcatttcatttatcctcaaatgtatgtataga 246  Q
    ||||||||| |||||||||||||||| | ||||||  ||| |||| |||||||||| ||||||||| |||||| |   || ||||||||||| ||||||    
T  25766698 ttcaaccttacattgccacatgtaacttctcctttacatttgattatgatatgtcacgtgtattgt-tcattttaaagattctcaaatgtatatataga 25766795  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 14264295 - 14264213
Alignment:
Q  160 ttgccacatgtaacatttcctttgtattagattttgatatgtcatgtgtattgtctcatttcatttatcctcaaatgtatgtat 243  Q
    |||||||||||||  ||||||||||||| ||| |||||||| |||||  ||||| ||||||  || || |||||||||||||||    
T  14264295 ttgccacatgtaatttttcctttgtatttgatcttgatatgccatgtaaattgtttcattt-tttcattctcaaatgtatgtat 14264213  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 45891720 - 45891664
Alignment:
Q  51 ttttatttgattgttg-ttacattttcttactttaatatgtcataaatggtgtaatt 106  Q
    |||||||||||||||| ||| | ||| |||||||| ||||||||||||||||| |||    
T  45891720 ttttatttgattgttggttatactttgttactttagtatgtcataaatggtgtcatt 45891664  T

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Target: scaffold0527 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 148 - 251
Target Start/End: Complemental strand, 2439 - 2337
Alignment:
Q  148 ttcaaccttgcattgccacatgtaacatttcctttgtattagattttgatatgtcatgtgtattgtctcatttcatttatcctcaaatgtatgtatagaa 247  Q
    ||||||||||||||||| |||||||| |||| |||  ||| |||||||||||| |||||||||||| |||||| |   || ||||||||||||||||||     
T  2439 ttcaaccttgcattgccgcatgtaacttttcttttaaatttgattttgatatgccatgtgtattgt-tcattttaaacattctcaaatgtatgtatagag 2341  T
Q  248 gatt 251  Q
    ||||    
T  2340 gatt 2337  T

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Target: scaffold0527; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 148 - 251
Target Start/End: Complemental strand, 10502 - 10400
Alignment:
Q  148 ttcaaccttgcattgccacatgtaacatttcctttgtattagattttgatatgtcatgtgtattgtctcatttcatttatcctcaaatgtatgtatagaa 247  Q
    ||||||||||||||||| |||||||| |||| |||  ||| |||||||||||| |||||||||||| |||||| |   || ||||||||||||||||||     
T  10502 ttcaaccttgcattgccgcatgtaacttttcttttaaatttgattttgatatgccatgtgtattgt-tcattttaaacattctcaaatgtatgtatagag 10404  T
Q  248 gatt 251  Q
    ||||    
T  10403 gatt 10400  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 26558532 - 26558612
Alignment:
Q  23 tgtaataataaaattcaatgaattaagattttatttgattgtt-gtt---acattttcttactttaatatgtcataaatgg 99  Q
    |||||| |||||||| ||||||| ||||||||||||||||||| |||   ||| ||| |||||||| ||||||||||||||    
T  26558532 tgtaatgataaaatttaatgaatcaagattttatttgattgttagttacaacactttgttactttagtatgtcataaatgg 26558612  T

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Target: scaffold0219 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 5002 - 4941
Alignment:
Q  148 ttcaaccttgcattgccacatgtaacatttcctttgtattagattttgatatgtcatgtgta 209  Q
    ||||||||| |||||||||||||||| |||| |||  ||| ||||||||| || ||||||||    
T  5002 ttcaaccttacattgccacatgtaacttttcttttaaatttgattttgatgtgccatgtgta 4941  T

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Target: scaffold0219; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 1856 - 1804
Alignment:
Q  51 ttttatttgattgttg-ttacattttcttactttaatatgtcataaatggtgt 102  Q
    |||||||||||||||| ||| | ||| |||||||| |||||||||||||||||    
T  1856 ttttatttgattgttggttatactttgttactttagtatgtcataaatggtgt 1804  T

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