View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20522_high_14 (Length: 256)

Name: NF20522_high_14
Description: NF20522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20522_high_14
NF20522_high_14
[»] chr8 (15 HSPs)
chr8 (1-134)||(32633777-32633910)
chr8 (122-236)||(32634989-32635103)
chr8 (1-134)||(13165391-13165524)
chr8 (1-136)||(5607495-5607630)
chr8 (1-136)||(5627740-5627875)
chr8 (1-134)||(14405227-14405360)
chr8 (1-127)||(5550299-5550425)
chr8 (1-128)||(6309934-6310061)
chr8 (122-237)||(5647212-5647327)
chr8 (175-229)||(14406404-14406458)
chr8 (129-226)||(6308590-6308687)
chr8 (171-235)||(13166872-13166936)
chr8 (126-223)||(5605591-5605688)
chr8 (126-223)||(5629682-5629779)
chr8 (185-229)||(5553137-5553181)
[»] scaffold0363 (2 HSPs)
scaffold0363 (1-134)||(13493-13626)
scaffold0363 (175-229)||(12395-12449)


Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 32633777 - 32633910
Alignment:
Q  1 ggatatgtggagctctcagaaagagtgattgattacgccaaaggcaaccctttagctctaaaagttttgggatcatttctttgttgcaaaagtgaaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32633777 ggatatgtggagctctcagaaagagtgattgattacgccaaaggcaaccctttagctctaaaagttttgggatcatttctttgtagcaaaagtgaaatag 32633876  T
Q  101 aatggaactgtacattagctaaactgaagaaaat 134  Q
    ||||||||||| ||||||||||||||||| ||||    
T  32633877 aatggaactgtgcattagctaaactgaaggaaat 32633910  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 122 - 236
Target Start/End: Complemental strand, 32635103 - 32634989
Alignment:
Q  122 aactgaagaaaatgcgacttagaactcttggagattgatgcagtccatggcattcaattcacagagggctggtgaacaagtgttactagaaatgctctta 221  Q
    |||||||||||||| |||  |||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  32635103 aactgaagaaaatgtgacggagaactcttggagattgatgcaattcatggcattcaattcacggagggctggtgaacaagtgttactggaaatgctctta 32635004  T
Q  222 agcgacgtgcatcca 236  Q
    |||||  ||||||||    
T  32635003 agcgatatgcatcca 32634989  T

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Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 13165391 - 13165524
Alignment:
Q  1 ggatatgtggagctctcagaaagagtgattgattacgccaaaggcaaccctttagctctaaaagttttgggatcatttctttgttgcaaaagtgaaatag 100  Q
    |||| ||||||||||||| |||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||  ||| ||||||||||||||||||    
T  13165391 ggatttgtggagctctcaaaaagagcgattgattacgccaaaggcatccctttagctctgaaagttttgggatcatcacttcgttgcaaaagtgaaatag 13165490  T
Q  101 aatggaactgtacattagctaaactgaagaaaat 134  Q
    ||||||| ||| || |  |||||||| |||||||    
T  13165491 aatggaattgtgcactgtctaaactggagaaaat 13165524  T

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Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 5607630 - 5607495
Alignment:
Q  1 ggatatgtggagctctcagaaagagtgattgattacgccaaaggcaaccctttagctctaaaagttttgggatcatttctttgttgcaaaagtgaaatag 100  Q
    |||||||||||||||||| ||||||  |||||||| |||| ||| |||||||||||| | ||||| ||||||||||| ||| |||| |||||||||| ||    
T  5607630 ggatatgtggagctctcaaaaagagcaattgattatgccagaggaaaccctttagctttgaaagtattgggatcattacttcgttgtaaaagtgaaaaag 5607531  T
Q  101 aatggaactgtacattagctaaactgaagaaaatgc 136  Q
    ||||| | ||| |||||| ||||||||| |||||||    
T  5607530 aatgggattgtgcattagataaactgaaaaaaatgc 5607495  T

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Target: chr8; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 5627740 - 5627875
Alignment:
Q  1 ggatatgtggagctctcagaaagagtgattgattacgccaaaggcaaccctttagctctaaaagttttgggatcatttctttgttgcaaaagtgaaatag 100  Q
    |||||||||||||||||| ||||||  |||||||| |||| ||| |||||||||||| | ||||| ||||||||||| ||| |||| |||||||||| ||    
T  5627740 ggatatgtggagctctcaaaaagagcaattgattatgccagaggaaaccctttagctttgaaagtattgggatcattacttcgttgtaaaagtgaaaaag 5627839  T
Q  101 aatggaactgtacattagctaaactgaagaaaatgc 136  Q
    ||||| | ||| |||||| ||||||||| |||||||    
T  5627840 aatgggattgtgcattagataaactgaaaaaaatgc 5627875  T

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Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 14405227 - 14405360
Alignment:
Q  1 ggatatgtggagctctcagaaagagtgattgattacgccaaaggcaaccctttagctctaaaagttttgggatcatttctttgttgcaaaagtgaaatag 100  Q
    |||||||||||||||||| ||||||   ||||||| ||||| || ||||| |||||| | ||||| |||||||| || ||| |||| ||||||||||| |    
T  14405227 ggatatgtggagctctcaaaaagagcagttgattatgccaacggaaacccgttagctttgaaagtattgggatctttacttcgttgtaaaagtgaaattg 14405326  T
Q  101 aatggaactgtacattagctaaactgaagaaaat 134  Q
    ||||| ||||| |||||||||||||||| |||||    
T  14405327 aatgggactgtgcattagctaaactgaaaaaaat 14405360  T

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Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 5550299 - 5550425
Alignment:
Q  1 ggatatgtggagctctcagaaagagtgattgattacgccaaaggcaaccctttagctctaaaagttttgggatcatttctttgttgcaaaagtgaaatag 100  Q
    |||||||||||||||||| ||||||  |||||||| |||| ||| |||||||||||| || |||| ||||||||||| ||| |||| |||| ||||| ||    
T  5550299 ggatatgtggagctctcaaaaagagcaattgattatgccagaggaaaccctttagctttacaagtattgggatcattacttagttgtaaaaatgaaaaag 5550398  T
Q  101 aatggaactgtacattagctaaactga 127  Q
    ||||| | ||| ||| |||||||||||    
T  5550399 aatgggattgtgcatcagctaaactga 5550425  T

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Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 6310061 - 6309934
Alignment:
Q  1 ggatatgtggagctctcagaaagagtgattgattacgccaaaggcaaccctttagctctaaaagttttgggatcatttctttgttgcaaaagtgaaatag 100  Q
    |||||||||||||||||| ||||||   ||||||| |||||||| || ||||||||| | ||||| ||||||||||| ||| |||| ||||||||||| |    
T  6310061 ggatatgtggagctctcaaaaagagcagttgattatgccaaaggaaatcctttagctttgaaagtattgggatcattacttcgttgtaaaagtgaaattg 6309962  T
Q  101 aatggaactgtacattagctaaactgaa 128  Q
    ||||| | ||| || | |||||||||||    
T  6309961 aatgggattgtgcactggctaaactgaa 6309934  T

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Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 237
Target Start/End: Complemental strand, 5647327 - 5647212
Alignment:
Q  122 aactgaagaaaatgcgacttagaactcttggagattgatgcagtccatggcattcaattcacagagggctggtgaacaagtgttactagaaatgctctta 221  Q
    |||||||| ||||| |||| ||||||||| |||||||| ||| | ||| ||||||||| ||  ||||||||||||||||||||||||  ||| |||||||    
T  5647327 aactgaagcaaatgggactgagaactctttgagattgaagcaattcatagcattcaatacatggagggctggtgaacaagtgttactgaaaaggctctta 5647228  T
Q  222 agcgacgtgcatccag 237  Q
    ||| | || |||||||    
T  5647227 agcaatgtacatccag 5647212  T

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Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 14406458 - 14406404
Alignment:
Q  175 tcaattcacagagggctggtgaacaagtgttactagaaatgctcttaagcgacgt 229  Q
    |||||| || |||||||||||||||||||||||| ||||||||||||||||||||    
T  14406458 tcaattgacggagggctggtgaacaagtgttactggaaatgctcttaagcgacgt 14406404  T

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Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 226
Target Start/End: Original strand, 6308590 - 6308687
Alignment:
Q  129 gaaaatgcgacttagaactcttggagattgatgcagtccatggcattcaattcacagagggctggtgaacaagtgttactagaaatgctcttaagcga 226  Q
    ||||||| |||| ||||||||| |||||||||||| ||| | || | |||||  | ||| |||||||||||||||||||| |||| ||||||||||||    
T  6308590 gaaaatgtgactgagaactctttgagattgatgcaatccctagcttccaatttccggagcgctggtgaacaagtgttactcgaaaggctcttaagcga 6308687  T

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Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 13166936 - 13166872
Alignment:
Q  171 gcattcaattcacagagggctggtgaacaagtgttactagaaatgctcttaagcgacgtgcatcc 235  Q
    ||||||||||||| || |||||| |||||||||||||| |||| ||||||||||||||| |||||    
T  13166936 gcattcaattcacggaaggctggagaacaagtgttactggaaaggctcttaagcgacgtacatcc 13166872  T

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Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 223
Target Start/End: Original strand, 5605591 - 5605688
Alignment:
Q  126 gaagaaaatgcgacttagaactcttggagattgatgcagtccatggcattcaattcacagagggctggtgaacaagtgttactagaaatgctcttaag 223  Q
    |||||||||| || | |||||||||  ||||||||||| |||||  |||||||   |  |||||||||||||||||||||||| |||| |||||||||    
T  5605591 gaagaaaatgggattgagaactctttaagattgatgcaatccataacattcaaaaaattgagggctggtgaacaagtgttactggaaaggctcttaag 5605688  T

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Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 223
Target Start/End: Complemental strand, 5629779 - 5629682
Alignment:
Q  126 gaagaaaatgcgacttagaactcttggagattgatgcagtccatggcattcaattcacagagggctggtgaacaagtgttactagaaatgctcttaag 223  Q
    |||||||||| || | |||||||||  ||||||||||| |||||  |||||||   |  |||||||||||||||||||||||| |||| |||||||||    
T  5629779 gaagaaaatgggattgagaactctttaagattgatgcaatccataacattcaaaaaattgagggctggtgaacaagtgttactggaaaggctcttaag 5629682  T

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Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 5553181 - 5553137
Alignment:
Q  185 gagggctggtgaacaagtgttactagaaatgctcttaagcgacgt 229  Q
    |||||||||||||||||||||||| |||| |||||||||||||||    
T  5553181 gagggctggtgaacaagtgttactggaaaggctcttaagcgacgt 5553137  T

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Target: scaffold0363 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 13626 - 13493
Alignment:
Q  1 ggatatgtggagctctcagaaagagtgattgattacgccaaaggcaaccctttagctctaaaagttttgggatcatttctttgttgcaaaagtgaaatag 100  Q
    |||||||||||||||||| ||||||   ||||||| ||||| || ||||| |||||| | ||||| |||||||| || ||| |||| ||||||||||| |    
T  13626 ggatatgtggagctctcaaaaagagcagttgattatgccaacggaaacccgttagctttgaaagtattgggatctttacttcgttgtaaaagtgaaattg 13527  T
Q  101 aatggaactgtacattagctaaactgaagaaaat 134  Q
    ||||| ||||| |||||||||||||||| |||||    
T  13526 aatgggactgtgcattagctaaactgaaaaaaat 13493  T

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Target: scaffold0363; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 12395 - 12449
Alignment:
Q  175 tcaattcacagagggctggtgaacaagtgttactagaaatgctcttaagcgacgt 229  Q
    |||||| || |||||||||||||||||||||||| ||||||||||||||||||||    
T  12395 tcaattgacggagggctggtgaacaagtgttactggaaatgctcttaagcgacgt 12449  T

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