View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20522_high_15 (Length: 254)
Name: NF20522_high_15
Description: NF20522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20522_high_15 |
 | |
|
| [»] scaffold0363 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 32634099 - 32634345
Alignment:
| Q |
1 |
taagagttgactttgaaagttgcgtacaaatacatgacttgatacaagaaatgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacg |
100 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| | |||| | |
|
|
| T |
32634099 |
taagagttgactttgaaaattgcatacaaatgcatgacttgatacaagaaatgggcaaacaagtcgttcgtgaagaatctcttaagaatccagaacaaag |
32634198 |
T |
|
| Q |
101 |
cagtagattgtgggatcctaaggaagtttatgatgtattgaaaaataatagagtaagaaaatgataccctgactttcctccctaaacacatgttttctat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
32634199 |
cagtagattgtgggatcctaaggaagtttatgatgtattgaaaaataatagagtaagaaaataataccctgactttccttcctatacacatgttttctat |
32634298 |
T |
|
| Q |
201 |
acagattgtgcggcttactacagaaatactaagtactaacattcata |
247 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32634299 |
acagattatgcggcttactacagcaatactaagtactaacattcata |
32634345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 6 - 201
Target Start/End: Original strand, 14405554 - 14405749
Alignment:
| Q |
6 |
gttgactttgaaagttgcgtacaaatacatgacttgatacaagaaatgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacgcagta |
105 |
Q |
| |
|
||||||| | ||| |||| ||||||| || |||||||||||||||||||| |||||| | |||| ||||||||| | ||||||||||||||||||||||| |
|
|
| T |
14405554 |
gttgactctaaaaattgcatacaaatgcacgacttgatacaagaaatgggaaaacaaattgttcgtgaagaatcacataagaatcccggacaacgcagta |
14405653 |
T |
|
| Q |
106 |
gattgtgggatcctaaggaagtttatgatgtattgaaaaataatagagtaagaaaatgataccctgactttcctccctaaacacatgttttctata |
201 |
Q |
| |
|
|||| || ||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| |||| ||| |||| ||| ||||||| |||| |
|
|
| T |
14405654 |
gattatgtgatcctaaggaagtttacgatgtattgaaaaataatagagtaagagaatgaaaccctcacttcccttcctacacatatgttttttata |
14405749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 5607308 - 5607143
Alignment:
| Q |
1 |
taagagttgactttgaaagttgcgtacaaatacatgacttgatacaagaaatgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacg |
100 |
Q |
| |
|
|||| ||||||| ||||| |||| ||||||| |||| ||||||||| |||||||| |||||| | |||| ||||||||| |||||||||||||||||||| |
|
|
| T |
5607308 |
taagggttgactctgaaaattgcatacaaatgcatggcttgatacaggaaatgggaaaacaaattgttcgtgaagaatcacttaagaatcccggacaacg |
5607209 |
T |
|
| Q |
101 |
cagtagattgtgggatcctaaggaagtttatgatgtattgaaaaataatagagtaagaaaatgata |
166 |
Q |
| |
|
||||||||| || |||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5607208 |
cagtagattatgtgatcctgaggaagtttatgatgtattgaaaaataatagagtaagagaatgata |
5607143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 5628062 - 5628227
Alignment:
| Q |
1 |
taagagttgactttgaaagttgcgtacaaatacatgacttgatacaagaaatgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacg |
100 |
Q |
| |
|
|||| ||||||| ||||| |||| ||||||| |||| ||||||||| |||||||| |||||| | |||| ||||||||| |||||||||||||||||||| |
|
|
| T |
5628062 |
taagggttgactctgaaaattgcatacaaatgcatggcttgatacaggaaatgggaaaacaaattgttcgtgaagaatcacttaagaatcccggacaacg |
5628161 |
T |
|
| Q |
101 |
cagtagattgtgggatcctaaggaagtttatgatgtattgaaaaataatagagtaagaaaatgata |
166 |
Q |
| |
|
||||||||| || |||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5628162 |
cagtagattatgtgatcctgaggaagtttatgatgtattgaaaaataatagagtaagagaatgata |
5628227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 13165713 - 13165879
Alignment:
| Q |
1 |
taagagttgactttgaaagttgcgtacaaatacatgacttgatacaagaaatgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacg |
100 |
Q |
| |
|
|||||||||||| | ||| || | ||||||| |||||||||||||| |||||||| | |||| | |||| ||||||||||||||||||||| |||||||| |
|
|
| T |
13165713 |
taagagttgactataaaaatttcatacaaatgcatgacttgatacaggaaatgggaagacaaattgttcgtgaagaatctcttaagaatcctggacaacg |
13165812 |
T |
|
| Q |
101 |
cagtagattgtgggatcctaaggaagtttatgatgtattgaaaaataatagagtaagaaaatgatac |
167 |
Q |
| |
|
||||||||| || |||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13165813 |
cagtagattatgtgatcctaaggaagtttttgatgtattgaaaaataatagagtaagagaatgatac |
13165879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 5550629 - 5550786
Alignment:
| Q |
9 |
gactttgaaagttgcgtacaaatacatgacttgatacaagaaatgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacgcagtagat |
108 |
Q |
| |
|
|||| ||||| |||| ||||||| |||| ||||||||| |||||||| |||||| | |||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5550629 |
gactctgaaaattgcatacaaatgcatggcttgatacaggaaatgggaaaacaaattgttcgtgaagaatcacttaagaatcccggacaacgcagtagat |
5550728 |
T |
|
| Q |
109 |
tgtgggatcctaaggaagtttatgatgtattgaaaaataatagagtaagaaaatgata |
166 |
Q |
| |
|
| || |||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5550729 |
tatgtgatcctgaggaagtttatgacgtattgaaaaataatagagtaagaaaatgata |
5550786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 6309739 - 6309582
Alignment:
| Q |
1 |
taagagttgactttgaaagttgcgtacaaatacatgacttgatacaagaaatgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacg |
100 |
Q |
| |
|
|||| ||||||||||||| |||| ||||||| ||||||||||||||||||| || |||||| | |||| ||||||||| |||||||||||||||||||| |
|
|
| T |
6309739 |
taagcgttgactttgaaaattgcatacaaatgcatgacttgatacaagaaacaggaaaacaaattgttcgtgaagaatcacttaagaatcccggacaacg |
6309640 |
T |
|
| Q |
101 |
cagtagattgtgggatcctaaggaagtttatgatgtattgaaaaataatagagtaaga |
158 |
Q |
| |
|
||||||||| || |||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
6309639 |
cagtagattatgtgatcctaaggaagtttgtaatgtattgaaaaataatagagtaaga |
6309582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 159
Target Start/End: Complemental strand, 12187857 - 12187731
Alignment:
| Q |
33 |
catgacttgatacaagaaatgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacgcagtagattgtgggatcctaaggaagtttatg |
132 |
Q |
| |
|
||||||||| ||||||||||||| | ||| | |||| |||||||||| | || || || ||||||||||||||||||||| || ||| ||| ||| || |
|
|
| T |
12187857 |
catgacttgttacaagaaatgggtaggcaaattgttcgtgaagaatctatcaaaaaccctggacaacgcagtagattgtggaatgctagtgaaatttgtg |
12187758 |
T |
|
| Q |
133 |
atgtattgaaaaataatagagtaagaa |
159 |
Q |
| |
|
|||| |||| ||| |||| ||||||| |
|
|
| T |
12187757 |
atgtgttgacaaacaataatgtaagaa |
12187731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 159
Target Start/End: Complemental strand, 12432285 - 12432159
Alignment:
| Q |
33 |
catgacttgatacaagaaatgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacgcagtagattgtgggatcctaaggaagtttatg |
132 |
Q |
| |
|
||||||||| ||||||||||||| | ||| | |||| |||||||||| | || || || ||||||||||||||||||||| || ||| ||| ||| || |
|
|
| T |
12432285 |
catgacttgttacaagaaatgggtaggcaaattgttcgtgaagaatctatcaaaaaccctggacaacgcagtagattgtggaatgctagtgaaatttgtg |
12432186 |
T |
|
| Q |
133 |
atgtattgaaaaataatagagtaagaa |
159 |
Q |
| |
|
|||| |||| ||| |||| ||||||| |
|
|
| T |
12432185 |
atgtgttgacaaacaataatgtaagaa |
12432159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 6 - 201
Target Start/End: Complemental strand, 13299 - 13104
Alignment:
| Q |
6 |
gttgactttgaaagttgcgtacaaatacatgacttgatacaagaaatgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacgcagta |
105 |
Q |
| |
|
||||||| | ||| |||| ||||||| || |||||||||||||||||||| |||||| | |||| ||||||||| | ||||||||||||||||||||||| |
|
|
| T |
13299 |
gttgactctaaaaattgcatacaaatgcacgacttgatacaagaaatgggaaaacaaattgttcgtgaagaatcacataagaatcccggacaacgcagta |
13200 |
T |
|
| Q |
106 |
gattgtgggatcctaaggaagtttatgatgtattgaaaaataatagagtaagaaaatgataccctgactttcctccctaaacacatgttttctata |
201 |
Q |
| |
|
|||| || ||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| |||| ||| |||| ||| ||||||| |||| |
|
|
| T |
13199 |
gattatgtgatcctaaggaagtttacgatgtattgaaaaataatagagtaagagaatgaaaccctcacttcccttcctacacatatgttttttata |
13104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 36002775 - 36002733
Alignment:
| Q |
106 |
gattgtgggatcctaaggaagtttatgatgtattgaaaaataa |
148 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||| |||| |
|
|
| T |
36002775 |
gattgtgggatcctaaggaagtgtatgatttattgaaatataa |
36002733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 42265476 - 42265356
Alignment:
| Q |
30 |
atacatgacttgatacaagaaatgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacgcagtagattgtgggatcctaaggaagttt |
129 |
Q |
| |
|
||||||||||||||||||||||||| | ||| | |||| ||||||||| | || || || ||| ||||||||||||||||| || ||| ||| ||| |
|
|
| T |
42265476 |
atacatgacttgatacaagaaatggataggcaaattgttcgggaagaatctatcaaaaaccctggaaaacgcagtagattgtggaatgctagcgaaattt |
42265377 |
T |
|
| Q |
130 |
atgatgtattgaaaaataata |
150 |
Q |
| |
|
|||||| |||| ||| |||| |
|
|
| T |
42265376 |
gtgatgtgttgacaaacaata |
42265356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University