View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20522_high_18 (Length: 238)
Name: NF20522_high_18
Description: NF20522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20522_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 116
Target Start/End: Original strand, 1663568 - 1663670
Alignment:
| Q |
14 |
atgaagaagagtgagagtggtggatatgtgagagcagatcaaatagatctgaagagtttagatgaacaattacaaaggcatcttagtagagcatggacta |
113 |
Q |
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| T |
1663568 |
atgaagaagagtgagagtggtggatatgtgagagcagatcaaatagatctgaagagtttagatgaacaattacaaaggcatcttagtagagcatggacta |
1663667 |
T |
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| Q |
114 |
tgg |
116 |
Q |
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||| |
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| T |
1663668 |
tgg |
1663670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 31046776 - 31046676
Alignment:
| Q |
14 |
atgaagaagagtgagagtggtggatatgtgagagcagatcaaatagatctgaagagtttagatgaacaattacaaaggcatctt--agtagagcatggac |
111 |
Q |
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| T |
31046776 |
atgaagaagagtgagagtggtggatatgtgagagcagatcaaatagatctgaagagtttagacgaacaattacaaaggcatcttacagtagagcatggac |
31046677 |
T |
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| Q |
112 |
t |
112 |
Q |
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| T |
31046676 |
t |
31046676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 1663724 - 1663774
Alignment:
| Q |
170 |
tcttcttctaatagtaatacaagaaatagacaagaatgggagattgatcct |
220 |
Q |
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| T |
1663724 |
tcttcttctaatagtaatacaagaaatagacaagaatgggagattgatcct |
1663774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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