View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20522_high_2 (Length: 589)
Name: NF20522_high_2
Description: NF20522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20522_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 69 - 330
Target Start/End: Original strand, 41405887 - 41406147
Alignment:
| Q |
69 |
aaagaaaaaggaccgccatctaaagacaacaaaatggacaagatttagaagtagacatggtcacatggacaaaatgaggagcaaacttacaaaggtgttc |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41405887 |
aaagaaaaaggaccgccatctaaagacaacaaaatggacaagatttagaagtagacatggtcacatggacaaaatgaggagcaaact-acaaaggtgttc |
41405985 |
T |
|
| Q |
169 |
cctatcgtagaagattgaaatttcaaattgcaaagaaaagtaattaggatgcttcctagtagcatcgtagaaccacagtagaaagtcgcactctcactca |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41405986 |
cctatcgtagaagattgaaatttcaaattgcaaagaaaagtaattaggatgcttcctagtagcatcgtagaaccacagttgaaagtcgcactctcactca |
41406085 |
T |
|
| Q |
269 |
ttaattcaacattttccgctctatatatgtccttttttccactcaacttagacagcacacaa |
330 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| |
|
|
| T |
41406086 |
ttaattcaacattttccgctctatatatatccttttttccactcaaattagacaacacacaa |
41406147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 428 - 531
Target Start/End: Original strand, 41406254 - 41406357
Alignment:
| Q |
428 |
aaatactcatggctaactttgaagaagtttcagctcttaaacgtataaaattccatcttctcggtgaattttctccacttccatctcctatttcaacacc |
527 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41406254 |
aaatactcatggctaactttgaagaagtttcagctcttaaacgtatcaaattccatcttctcggtgaattttctccacttccatctcctatttcaacacc |
41406353 |
T |
|
| Q |
528 |
ttgc |
531 |
Q |
| |
|
|||| |
|
|
| T |
41406354 |
ttgc |
41406357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 428 - 531
Target Start/End: Original strand, 41399144 - 41399247
Alignment:
| Q |
428 |
aaatactcatggctaactttgaagaagtttcagctcttaaacgtataaaattccatcttctcggtgaattttctccacttccatctcctatttcaacacc |
527 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||| ||||| || ||| | |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41399144 |
aaatactcatggctaattttgaagaagcttcagctctaaaacgcatcaaaatgcatcttcttggtgaattttctccacttccatctcctatttcaacacc |
41399243 |
T |
|
| Q |
528 |
ttgc |
531 |
Q |
| |
|
|||| |
|
|
| T |
41399244 |
ttgc |
41399247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 201 - 271
Target Start/End: Original strand, 41398914 - 41398987
Alignment:
| Q |
201 |
aagaaaagtaattaggatgcttcctagtag---catcgtagaaccacagtagaaagtcgcactctcactcatta |
271 |
Q |
| |
|
|||||||| || |||||||||||||||||| |||||||| ||||||||||||| ||||| ||||||||||| |
|
|
| T |
41398914 |
aagaaaaggaaataggatgcttcctagtagcatcatcgtagcgccacagtagaaagacgcacactcactcatta |
41398987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 41405832 - 41405867
Alignment:
| Q |
16 |
atagtagtatgcattaatcaaaaggaccgccatttg |
51 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41405832 |
atagtaatatgcattaatcaaaaggaccgccatttg |
41405867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University