View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20522_high_21 (Length: 214)
Name: NF20522_high_21
Description: NF20522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20522_high_21 |
 | |
|
| [»] scaffold0028 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0028 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 109955 - 110155
Alignment:
| Q |
1 |
accaagtcttctcacaataagaaactcacgtccttcgtttt-ttctcacagtagagaaaaccatacatacttattagagaactcacatctacacaaaaaa |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
109955 |
accaagtcttctcacaataagaaactcacgtccttcatttttttctcacagtagagaaaaccatacatacttattagagaactcacatctacacaaaaaa |
110054 |
T |
|
| Q |
100 |
ttaatttcttttttcttataaattcaagtctaggttttctgggtgcatctccagtgtatatattcgagttgttctatcacctctaacatgattcatctca |
199 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||| |
|
|
| T |
110055 |
ttatcttcttttttcttataaattcaagtctaggtttcctgggtgcatctccagtgtatatattcgagttgttctgtcacctctgacatgattcatatca |
110154 |
T |
|
| Q |
200 |
g |
200 |
Q |
| |
|
| |
|
|
| T |
110155 |
g |
110155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 127537 - 127734
Alignment:
| Q |
1 |
accaagtcttctcacaataagaaactcacgtccttcgttttttctcacagtagagaaaaccatacatacttatta--gagaactcacatctacacaaaaa |
98 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||| |||||||| ||||| |||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
127537 |
accaagccttctcacaataagaaactcacgtccttcattttttc--acagtaga--aaaccggacatacttgttacagagaactcacatctacacaaaaa |
127632 |
T |
|
| Q |
99 |
attaatttcttttttcttataaattcaagtctaggttttctgggtgcatctccagtgtatatattcgagttgttctatcacctctaacatgattcatctc |
198 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| || |
|
|
| T |
127633 |
attaatttcctttttcttataaattcaagtcaaggttttctgggtgcatctccagtgtatacattcgagttgttctgtcacctctgacatgattcatatc |
127732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 31206912 - 31206728
Alignment:
| Q |
1 |
accaagtcttctcacaataagaaa--ctcacgtccttcgttttttctcacagtagagaaaaccatacatacttatta--gagaactcacatctacacaaa |
96 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||| ||||| |||| |||| |||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
31206912 |
accaagtcttctcacaataaaaaaaactcacgtccttcattttt---cacaatagaaaaaaccatacatacttgttacagagaactcacatctacacaaa |
31206816 |
T |
|
| Q |
97 |
aaa--ttaatttcttttttcttataaattcaagtctaggttttctgggtgcatctccagtgtatatattcgagttgttctatcacctc |
182 |
Q |
| |
|
||| |||||||| ||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
31206815 |
aaaaattaatttcctttttcttataaaatcaagtttaggttttctgggtgcatctcctgtgtatatattcgagttgttctgtcacctc |
31206728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 31210286 - 31210177
Alignment:
| Q |
74 |
tagagaactcacatctacacaaaaaa-ttaatttcttttttcttataaattcaagtctaggttttctgggtgcatctccagtgtatatattcgagttgtt |
172 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||| |||||||||| || |||||| |||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
31210286 |
tagagaactcacatctacccaaaaaaattaatttcctttttcttatcaaatcaagtttaggttttctaggtgcatctcctgtgtatatattcgagttgtt |
31210187 |
T |
|
| Q |
173 |
ctatcacctc |
182 |
Q |
| |
|
|| ||||||| |
|
|
| T |
31210186 |
ctgtcacctc |
31210177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 44643286 - 44643469
Alignment:
| Q |
1 |
accaagtcttctcacaataagaaa--ctcacgtccttcgttttttctcacagtagagaaaaccatacatacttatta--gagaactcacatctacacaaa |
96 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||| ||||||| |||||||| |||||||||||||||| ||| |||||||||||||||||| || |
|
|
| T |
44643286 |
accaagtcttctcacaataaaaaaaactcacgtccttcattttttc--acagtagaaaaaaccatacatacttgttatagagaactcacatctacacgaa |
44643383 |
T |
|
| Q |
97 |
aaattaatttcttttttcttataaattcaagtctaggttttctgggtgcatctccagtgtatatattcgagttgttctatcacctct |
183 |
Q |
| |
|
|| |||||||| ||||||||||||| |||||| |||||||| | |||| |||||| |||||||||||||||||||||| ||| |||| |
|
|
| T |
44643384 |
aa-ttaatttcctttttcttataaaatcaagtttaggtttttttggtgaatctcctgtgtatatattcgagttgttctgtcatctct |
44643469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 32424828 - 32424996
Alignment:
| Q |
5 |
agtcttctcacaataa--gaaactcacgtccttcgttttttctcacagtagagaaaaccatacatacttatta--gagaactcacatctacacaaaaaat |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||| || |||||| |||||||||||||||| ||| |||||||||||||||||||||| || |
|
|
| T |
32424828 |
agtcttctcacaataaaagaaactcacgtccttcattttt---catagtagaaaaaaccatacatacttgttatagagaactcacatctacacaaaa-at |
32424923 |
T |
|
| Q |
101 |
taatttcttttttcttataaattcaagtctaggttttctgggtgcatctccagtgtatatattcgagttgttc |
173 |
Q |
| |
|
||||||| ||||||||||||| |||||| |||||||||| ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
32424924 |
taatttcctttttcttataaaatcaagtttaggttttcttggtgcatctcctgtgtatatatttgagttgttc |
32424996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 4 - 156
Target Start/End: Original strand, 27107140 - 27107290
Alignment:
| Q |
4 |
aagtcttctcacaataagaaactcacgtccttcgttttttctcacagtagagaaaaccatacatacttattagaga--actcacatctacacaaaaaatt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||| || |||||||||||||||||| || ||| |||||||||||||||||| ||| |
|
|
| T |
27107140 |
aagtcttctcacaataagaaactcacgtccttcattttt---cacaatatagaaaaccatacatactttatacagacaactcacatctacacaaaa-att |
27107235 |
T |
|
| Q |
102 |
aatttcttttttcttataaattcaagtctaggttttctgggtgcatctccagtgt |
156 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
27107236 |
aatttcctttttcttataaattcatgtctaggttttctgggtgcatctcctgtgt |
27107290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 86 - 181
Target Start/End: Complemental strand, 4242766 - 4242672
Alignment:
| Q |
86 |
atctacacaaaaaattaatttcttttttcttataaattcaagtctaggttttctgggtgcatctccagtgtatatattcgagttgttctatcacct |
181 |
Q |
| |
|
||||||||||||| |||||||| |||||| |||||| |||||||||||||| |||||||||||||| |||| ||||||||||||||||| |||||| |
|
|
| T |
4242766 |
atctacacaaaaa-ttaatttcctttttcatataaaatcaagtctaggtttcctgggtgcatctcctgtgtttatattcgagttgttctgtcacct |
4242672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 16366504 - 16366454
Alignment:
| Q |
145 |
catctccagtgtatatattcgagttgttctatcacctctaacatgattcat |
195 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||| | | ||||||||| |
|
|
| T |
16366504 |
catctcctgtgtatatattcgagttgttctgtcacctttgatatgattcat |
16366454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University