View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20522_high_23 (Length: 208)

Name: NF20522_high_23
Description: NF20522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20522_high_23
NF20522_high_23
[»] chr8 (16 HSPs)
chr8 (63-190)||(32633599-32633726)
chr8 (1-67)||(32633777-32633843)
chr8 (83-190)||(13165213-13165320)
chr8 (83-190)||(14405049-14405156)
chr8 (83-175)||(5571719-5571811)
chr8 (1-67)||(13165391-13165457)
chr8 (83-190)||(6310132-6310239)
chr8 (63-190)||(12176944-12177071)
chr8 (63-190)||(12421372-12421499)
chr8 (103-190)||(5550121-5550208)
chr8 (103-190)||(5607721-5607808)
chr8 (103-190)||(5627562-5627649)
chr8 (1-57)||(5550299-5550355)
chr8 (1-57)||(5607574-5607630)
chr8 (1-57)||(5627740-5627796)
chr8 (1-57)||(6310005-6310061)
[»] scaffold0363 (1 HSPs)
scaffold0363 (83-190)||(13697-13804)
[»] chr2 (1 HSPs)
chr2 (103-175)||(19492705-19492777)


Alignment Details
Target: chr8 (Bit Score: 124; Significance: 6e-64; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 63 - 190
Target Start/End: Complemental strand, 32633726 - 32633599
Alignment:
Q  63 agtttcgagagttcatttctttaacttgatgaattttgtcaattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctaccatc 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32633726 agtttcgagagttcatttctttaacttgatgaattttgtcaattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctaccatc 32633627  T
Q  163 tcctagccaaccattccccactccaatc 190  Q
    |||||||||||||||||| |||||||||    
T  32633626 tcctagccaaccattcccgactccaatc 32633599  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 32633777 - 32633843
Alignment:
Q  1 ggatatgtggagctctcagaaagagtgattgattacgccaaaggcaaccctttagctctaaaagttt 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32633777 ggatatgtggagctctcagaaagagtgattgattacgccaaaggcaaccctttagctctaaaagttt 32633843  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 13165320 - 13165213
Alignment:
Q  83 ttaacttgatgaattttgtcaattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctaccatctcctagccaaccattcccca 182  Q
    ||||||| || |||||  |||||||||||||| | |||||||||||||||||| ||||| ||||||||| |||||||| |||||| ||||||||  ||||    
T  13165320 ttaacttcataaatttcttcaattcctccacttatcagcacatgcttatccctagtcgtcacaatgactgtgctaccagctcctaaccaaccatgtccca 13165221  T
Q  183 ctccaatc 190  Q
    ||||||||    
T  13165220 ctccaatc 13165213  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 14405156 - 14405049
Alignment:
Q  83 ttaacttgatgaattttgtcaattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctaccatctcctagccaaccattcccca 182  Q
    ||||||| || ||||||||| ||||||||||| | |||||||||||||||||| || || || |||||| ||||||||  ||||||||||||||  ||||    
T  14405156 ttaacttcataaattttgtcgattcctccacttatcagcacatgcttatccctcgtagtcacgatgactgtgctaccagatcctagccaaccatgtccca 14405057  T
Q  183 ctccaatc 190  Q
    ||||||||    
T  14405056 ctccaatc 14405049  T

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Target: chr8; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 5571811 - 5571719
Alignment:
Q  83 ttaacttgatgaattttgtcaattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctaccatctcctagccaacca 175  Q
    ||||||| || ||||| ||||||||||||||| | ||||||||| |||||||| ||||| ||||||||||||||||||  ||| |||||||||    
T  5571811 ttaacttcataaatttcgtcaattcctccacttatcagcacatgtttatccctagtcgtcacaatgactatgctaccaggtccaagccaacca 5571719  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 13165391 - 13165457
Alignment:
Q  1 ggatatgtggagctctcagaaagagtgattgattacgccaaaggcaaccctttagctctaaaagttt 67  Q
    |||| ||||||||||||| |||||| |||||||||||||||||||| |||||||||||| |||||||    
T  13165391 ggatttgtggagctctcaaaaagagcgattgattacgccaaaggcatccctttagctctgaaagttt 13165457  T

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Target: chr8; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 6310132 - 6310239
Alignment:
Q  83 ttaacttgatgaattttgtcaattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctaccatctcctagccaaccattcccca 182  Q
    ||||||| || |||||| ||||| |||||||| | ||  |||||||||||||| ||||| ||||||||| ||||||||  ||||||||||||||  || |    
T  6310132 ttaacttcataaattttttcaatccctccacttatcaagacatgcttatccctagtcgtcacaatgactgtgctaccagatcctagccaaccatgtccta 6310231  T
Q  183 ctccaatc 190  Q
    ||||||||    
T  6310232 ctccaatc 6310239  T

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Target: chr8; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 63 - 190
Target Start/End: Original strand, 12176944 - 12177071
Alignment:
Q  63 agtttcgagagttcatttctttaacttgatgaattttgtcaattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctaccatc 162  Q
    ||||| ||||||||||||| |||||||||||||||| |||||||||||| |    || |||||||||||| || || || ||||||||| |||||||| |    
T  12176944 agttttgagagttcatttccttaacttgatgaatttcgtcaattcctcctcctgtcaacacatgcttatctctggttgtcacaatgactctgctaccaac 12177043  T
Q  163 tcctagccaaccattccccactccaatc 190  Q
    ||| || ||| ||| |||  ||||||||    
T  12177044 tccaaggcaatcatgccctgctccaatc 12177071  T

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Target: chr8; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 63 - 190
Target Start/End: Original strand, 12421372 - 12421499
Alignment:
Q  63 agtttcgagagttcatttctttaacttgatgaattttgtcaattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctaccatc 162  Q
    ||||| ||||||||||||| |||||||||||||||| |||||||||||| |    || |||||||||||| || || || ||||||||| |||||||| |    
T  12421372 agttttgagagttcatttccttaacttgatgaatttcgtcaattcctcctcctgtcaacacatgcttatctctggttgtcacaatgactctgctaccaac 12421471  T
Q  163 tcctagccaaccattccccactccaatc 190  Q
    ||| || ||| ||| |||  ||||||||    
T  12421472 tccaaggcaatcatgccctgctccaatc 12421499  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 5550208 - 5550121
Alignment:
Q  103 aattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctaccatctcctagccaaccattccccactccaatc 190  Q
    |||||||||||| | ||||||||| |||||||| || || ||||||||| | ||||||  ||||||||||||||  || |||||||||    
T  5550208 aattcctccacttatcagcacatgtttatccctagtagtcacaatgactgtactaccagatcctagccaaccatgtcctactccaatc 5550121  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 5607721 - 5607808
Alignment:
Q  103 aattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctaccatctcctagccaaccattccccactccaatc 190  Q
    |||||||||||| | ||||||||| |||||||| || || ||||||||| | ||||||  ||||||||||||||  || |||||||||    
T  5607721 aattcctccacttatcagcacatgtttatccctagtagtcacaatgactgtactaccagatcctagccaaccatgtcctactccaatc 5607808  T

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Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 5627649 - 5627562
Alignment:
Q  103 aattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctaccatctcctagccaaccattccccactccaatc 190  Q
    |||||||||||| | ||||||||| |||||||| || || ||||||||| | ||||||  ||||||||||||||  || |||||||||    
T  5627649 aattcctccacttatcagcacatgtttatccctagtagtcacaatgactgtactaccagatcctagccaaccatgtcctactccaatc 5627562  T

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Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 5550299 - 5550355
Alignment:
Q  1 ggatatgtggagctctcagaaagagtgattgattacgccaaaggcaaccctttagct 57  Q
    |||||||||||||||||| ||||||  |||||||| |||| ||| ||||||||||||    
T  5550299 ggatatgtggagctctcaaaaagagcaattgattatgccagaggaaaccctttagct 5550355  T

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Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 5607630 - 5607574
Alignment:
Q  1 ggatatgtggagctctcagaaagagtgattgattacgccaaaggcaaccctttagct 57  Q
    |||||||||||||||||| ||||||  |||||||| |||| ||| ||||||||||||    
T  5607630 ggatatgtggagctctcaaaaagagcaattgattatgccagaggaaaccctttagct 5607574  T

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Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 5627740 - 5627796
Alignment:
Q  1 ggatatgtggagctctcagaaagagtgattgattacgccaaaggcaaccctttagct 57  Q
    |||||||||||||||||| ||||||  |||||||| |||| ||| ||||||||||||    
T  5627740 ggatatgtggagctctcaaaaagagcaattgattatgccagaggaaaccctttagct 5627796  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 6310061 - 6310005
Alignment:
Q  1 ggatatgtggagctctcagaaagagtgattgattacgccaaaggcaaccctttagct 57  Q
    |||||||||||||||||| ||||||   ||||||| |||||||| || |||||||||    
T  6310061 ggatatgtggagctctcaaaaagagcagttgattatgccaaaggaaatcctttagct 6310005  T

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Target: scaffold0363 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 13697 - 13804
Alignment:
Q  83 ttaacttgatgaattttgtcaattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctaccatctcctagccaaccattcccca 182  Q
    ||||||| || ||||||||| ||||||||||| | |||||||||||||||||| || || || |||||| ||||||||  ||||||||||||||  ||||    
T  13697 ttaacttcataaattttgtcgattcctccacttatcagcacatgcttatccctcgtagtcacgatgactgtgctaccagatcctagccaaccatgtccca 13796  T
Q  183 ctccaatc 190  Q
    ||||||||    
T  13797 ctccaatc 13804  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 19492705 - 19492777
Alignment:
Q  103 aattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctaccatctcctagccaacca 175  Q
    ||||||||||||   |||||||| || |||||| || || |||||||||||||||||| ||||||||||||||    
T  19492705 aattcctccacttttcagcacatcctcatccctagtagtcacaatgactatgctaccagctcctagccaacca 19492777  T

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