View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20522_high_3 (Length: 587)

Name: NF20522_high_3
Description: NF20522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20522_high_3
NF20522_high_3
[»] chr4 (23 HSPs)
chr4 (18-583)||(51904661-51905242)
chr4 (21-150)||(5994916-5995045)
chr4 (19-152)||(27654478-27654611)
chr4 (18-112)||(51340009-51340103)
chr4 (25-155)||(37586518-37586648)
chr4 (19-144)||(5027442-5027566)
chr4 (19-152)||(24106693-24106826)
chr4 (21-115)||(32949589-32949683)
chr4 (55-144)||(3976415-3976504)
chr4 (21-136)||(26001447-26001562)
chr4 (20-152)||(56328679-56328811)
chr4 (64-135)||(50571882-50571953)
chr4 (21-70)||(16318881-16318930)
chr4 (21-78)||(19676607-19676664)
chr4 (18-135)||(43771144-43771260)
chr4 (21-81)||(19677326-19677386)
chr4 (56-115)||(34004830-34004889)
chr4 (69-104)||(51206092-51206127)
chr4 (82-135)||(20454558-20454611)
chr4 (19-52)||(39401946-39401979)
chr4 (82-135)||(50481654-50481707)
chr4 (39-115)||(3888642-3888718)
chr4 (44-96)||(43515288-43515340)
[»] chr8 (20 HSPs)
chr8 (21-144)||(45524924-45525047)
chr8 (21-155)||(24683569-24683703)
chr8 (19-115)||(37927519-37927615)
chr8 (19-106)||(9008988-9009075)
chr8 (37-115)||(28485445-28485523)
chr8 (26-110)||(41668592-41668676)
chr8 (19-142)||(11574077-11574200)
chr8 (19-115)||(9953715-9953811)
chr8 (25-104)||(42474010-42474089)
chr8 (19-152)||(45218563-45218694)
chr8 (38-143)||(24184377-24184482)
chr8 (41-104)||(27799274-27799337)
chr8 (18-115)||(14636091-14636188)
chr8 (19-115)||(29011091-29011187)
chr8 (41-155)||(32022911-32023025)
chr8 (70-135)||(9952854-9952919)
chr8 (19-136)||(13105367-13105483)
chr8 (70-135)||(32072115-32072180)
chr8 (27-115)||(16314329-16314417)
chr8 (84-136)||(38091388-38091440)
[»] chr2 (22 HSPs)
chr2 (27-152)||(19193557-19193682)
chr2 (21-136)||(42669778-42669893)
chr2 (19-115)||(19953433-19953529)
chr2 (19-142)||(31494219-31494340)
chr2 (21-104)||(18949243-18949326)
chr2 (19-152)||(43400134-43400267)
chr2 (18-115)||(6420500-6420595)
chr2 (21-94)||(4024748-4024821)
chr2 (18-135)||(12989209-12989325)
chr2 (19-144)||(37077969-37078094)
chr2 (48-152)||(20458914-20459016)
chr2 (27-142)||(8163514-8163629)
chr2 (21-152)||(19190631-19190764)
chr2 (85-150)||(17505921-17505986)
chr2 (82-135)||(36471947-36472000)
chr2 (70-135)||(45554585-45554650)
chr2 (18-134)||(9470100-9470215)
chr2 (18-98)||(34375392-34375472)
chr2 (69-135)||(3804602-3804669)
chr2 (18-152)||(38464164-38464297)
chr2 (22-115)||(30706307-30706400)
chr2 (119-155)||(35523381-35523417)
[»] chr7 (21 HSPs)
chr7 (19-143)||(2911771-2911895)
chr7 (19-104)||(46994409-46994494)
chr7 (19-152)||(23434697-23434829)
chr7 (21-90)||(24845478-24845547)
chr7 (21-90)||(44350218-44350287)
chr7 (29-152)||(4090035-4090156)
chr7 (157-245)||(6688283-6688369)
chr7 (62-124)||(33852559-33852621)
chr7 (60-113)||(32721014-32721067)
chr7 (19-106)||(20954726-20954813)
chr7 (19-134)||(22189958-22190072)
chr7 (18-135)||(12263482-12263598)
chr7 (46-115)||(17354600-17354669)
chr7 (27-136)||(39523592-39523701)
chr7 (70-134)||(7775019-7775083)
chr7 (19-107)||(24681643-24681731)
chr7 (19-150)||(35549696-35549827)
chr7 (19-104)||(11789821-11789904)
chr7 (77-135)||(19422938-19422996)
chr7 (70-135)||(44511033-44511098)
chr7 (47-115)||(29462076-29462144)
[»] chr6 (8 HSPs)
chr6 (25-144)||(25326840-25326959)
chr6 (25-144)||(26159375-26159494)
chr6 (26-115)||(26170944-26171033)
chr6 (18-152)||(12690253-12690387)
chr6 (27-152)||(31947261-31947386)
chr6 (37-152)||(29610301-29610416)
chr6 (21-147)||(6163567-6163693)
chr6 (18-134)||(34905355-34905470)
[»] chr1 (18 HSPs)
chr1 (19-144)||(28274795-28274920)
chr1 (37-155)||(18157036-18157154)
chr1 (21-155)||(18473647-18473781)
chr1 (27-152)||(1468443-1468566)
chr1 (21-90)||(11247833-11247902)
chr1 (19-152)||(21977188-21977321)
chr1 (18-144)||(18953210-18953335)
chr1 (19-108)||(5602606-5602695)
chr1 (19-115)||(21970324-21970420)
chr1 (42-152)||(14340990-14341100)
chr1 (25-115)||(15741860-15741950)
chr1 (21-89)||(33234470-33234538)
chr1 (40-152)||(40125906-40126018)
chr1 (19-92)||(2592965-2593038)
chr1 (21-89)||(7549649-7549718)
chr1 (19-51)||(46792979-46793011)
chr1 (19-141)||(25010005-25010126)
chr1 (92-136)||(31602076-31602120)
[»] chr5 (16 HSPs)
chr5 (19-155)||(10299883-10300019)
chr5 (18-143)||(20526764-20526889)
chr5 (28-112)||(43461423-43461507)
chr5 (21-72)||(41034478-41034529)
chr5 (21-90)||(25002054-25002123)
chr5 (21-90)||(36325501-36325569)
chr5 (40-144)||(1649559-1649662)
chr5 (37-152)||(32309481-32309596)
chr5 (27-115)||(7585024-7585112)
chr5 (22-111)||(6529923-6530012)
chr5 (19-114)||(5413784-5413878)
chr5 (19-94)||(5630553-5630628)
chr5 (77-135)||(17537206-17537264)
chr5 (64-142)||(42224682-42224760)
chr5 (21-90)||(23260220-23260289)
chr5 (82-134)||(43405412-43405464)
[»] chr3 (22 HSPs)
chr3 (18-136)||(22813317-22813435)
chr3 (21-134)||(10798325-10798438)
chr3 (21-155)||(7791826-7791960)
chr3 (18-112)||(10817362-10817457)
chr3 (21-128)||(44911653-44911760)
chr3 (38-152)||(214036-214149)
chr3 (18-152)||(7640640-7640774)
chr3 (18-152)||(49720047-49720181)
chr3 (25-94)||(34706634-34706703)
chr3 (19-115)||(44225881-44225977)
chr3 (19-136)||(38169039-38169156)
chr3 (27-104)||(9774214-9774291)
chr3 (21-90)||(46205580-46205649)
chr3 (21-90)||(53655455-53655524)
chr3 (18-135)||(28529271-28529385)
chr3 (84-150)||(42780673-42780739)
chr3 (21-90)||(52223463-52223532)
chr3 (36-108)||(8475199-8475271)
chr3 (19-94)||(21175550-21175625)
chr3 (18-112)||(17440202-17440296)
chr3 (18-104)||(18427196-18427281)
chr3 (70-135)||(5452157-5452222)
[»] scaffold0005 (1 HSPs)
scaffold0005 (19-152)||(296837-296970)
[»] scaffold0370 (2 HSPs)
scaffold0370 (424-464)||(11209-11249)
scaffold0370 (424-464)||(16499-16539)
[»] scaffold0147 (1 HSPs)
scaffold0147 (18-115)||(28334-28431)
[»] scaffold0155 (1 HSPs)
scaffold0155 (64-115)||(35632-35683)
[»] scaffold0018 (1 HSPs)
scaffold0018 (18-104)||(27861-27946)
[»] scaffold0886 (1 HSPs)
scaffold0886 (27-112)||(3286-3371)


Alignment Details
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 18 - 583
Target Start/End: Original strand, 51904661 - 51905242
Alignment:
Q  18 cttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51904661 cttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgac 51904760  T
Q  118 aaagagagtgttg--------------aaaagatagtgtccttagcatttcttccaataaatttagctcccaatactcttcaagaacatcccctaaaaat 203  Q
    |||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51904761 aaagagagtgttgaaaagatagagttgaaaagatagtgtccttagcatttcttccaataaatttagctcccaatactcttcaagaacatcccctaaaaat 51904860  T
Q  204 ttctctcattcaccctcttataatcacttaataattttcactttgtttagaaaatattttccaactatagaatctctcctaacaatgcagcaacccttaa 303  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  51904861 ttctctcatttaccctcttataatcacttaaaaattttcactttgtttacaaagtattttccaactatagaatctctcctaacaatgcagcaacccttaa 51904960  T
Q  304 atgttttttcttttgatctttcaagattcacccaagttgcatacaaacctctcagactctcgtgttttccatgtgtttctaagagtcttctcttttgatt 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||    
T  51904961 atgttttttcttttgatctttcaagattcacccaagttgcatacaaacctctcaaactctcgtgttttccatgtgtttctaagagtctcctcttttggtt 51905060  T
Q  404 tcatgagattacacacacag--aaaaaatgttggccttttatacactccaaaagctgaaaatttcataccctgcgcaccacgtcttattgtaggatcaac 501  Q
    ||||||||||||||||||||  |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51905061 tcatgagattacacacacaggaaaaaaacgttggccttttataccctccaaaagctgaaaatttcataccctgcgcaccacgtcttattgtaggatcaac 51905160  T
Q  502 taacatatcatcatcagatcttgccctcagctaacacgcctcttttctctttcttgtatgaattgctctgtctgtgctcctc 583  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  51905161 taacatatcatcatcagatcttgccctcagcaaacacgcctcttttctctttcttgtatgaattgctctgtccgtgctcctc 51905242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 5994916 - 5995045
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaa 120  Q
    |||| |||||||||||||||||||||||| ||| |||| |||||||||||||||| || ||||||||||  ||| ||| ||||||||||||||||  |||    
T  5994916 attgacttaaatcatggtgggtctcacacattggaaatgggttccacttaaagtggtgagtcatacattagttttatccaataagagaatgagtgttaaa 5995015  T
Q  121 gagagtgttgaaaagatagtgtccttagca 150  Q
    |||||||||||||||| | ||||| |||||    
T  5995016 gagagtgttgaaaagagaatgtccctagca 5995045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 27654611 - 27654478
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgaca 118  Q
    ||||||| |||||||| ||||| | |||||| ||| |||| |||||||||||||||| |||| ||||||||  ||| ||| ||||||||||||||||  |    
T  27654611 ttattggtttaaatcaaggtggatttcacacgttggaaatgggttccacttaaagtggtgggacatacattagttttatccaataagagaatgagtgtta 27654512  T
Q  119 aagagagtgttgaaaagatagtgtccttagcatt 152  Q
     ||||||||||||||||| ||||||| |||||||    
T  27654511 gagagagtgttgaaaagagagtgtccctagcatt 27654478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 51340009 - 51340103
Alignment:
Q  18 cttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatga 112  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||| | |||||| ||||||| ||||||| ||||| |||||||    
T  51340009 cttattggcttaaatcatagtgggtctcacactttggaaataggtttcacttaaagcggtgggtcgtacattggtttcatcaaataaaagaatga 51340103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 37586518 - 37586648
Alignment:
Q  25 gcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagaga 124  Q
    ||||||||||||||||||||||||||||| |||| || ||||||||||||| ||||||| | |||| ||| | | ||| | | | ||||||   || |||    
T  37586518 gcttaaatcatggtgggtctcacactttgaaaatgggatccacttaaagtggtgggtcacatattggtttaagccaattaaaaagtgagtgttgaataga 37586617  T
Q  125 gtgttgaaaagatagtgtccttagcatttct 155  Q
    |||||||||||| ||||||||||||||||||    
T  37586618 gtgttgaaaagagagtgtccttagcatttct 37586648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 5027442 - 5027566
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgaca 118  Q
    |||||||||||||||| | || |||||||| |||| |||| | ||| |||||||||||||||||||| ||||||| |||| ||||| | ||||||||  |    
T  5027442 ttattggcttaaatcaagatgagtctcacattttgaaaatcgattcaacttaaagtgatgggtcatatattgattacatccaataa-aaaatgagtgtta 5027540  T
Q  119 aagagagtgttgaaaagatagtgtcc 144  Q
    ||||||||||| |||||| |||||||    
T  5027541 aagagagtgttcaaaagagagtgtcc 5027566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 24106693 - 24106826
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgaca 118  Q
    ||||||| |||||||| ||||||||| |||| ||  ||||  |||||||||||||| ||||| ||| ||||  ||||||| ||||||||| || |||  |    
T  24106693 ttattggtttaaatcaaggtgggtcttacacattagaaatgagttccacttaaagtcatgggacatgcattagtttcatccaataagagagtgggtgtta 24106792  T
Q  119 aagagagtgttgaaaagatagtgtccttagcatt 152  Q
     ||||||||||||||||| |||||| ||||||||    
T  24106793 gagagagtgttgaaaagagagtgtcattagcatt 24106826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 32949683 - 32949589
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtg 115  Q
    |||||||||||||||||||||||| |||||||| ||||  |||||| |||||||| ||| |||||||||  ||| ||| ||||| | ||||||||    
T  32949683 attggcttaaatcatggtgggtcttacactttggaaattagttccagttaaagtggtggatcatacattagttttatccaataaaaaaatgagtg 32949589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 144
Target Start/End: Original strand, 3976415 - 3976504
Alignment:
Q  55 aaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaagatagtgtcc 144  Q
    |||| ||||||||||||| || ||| |||||||||| ||| ||| ||||||||||||||||   |||||||||||||||| | |||||||    
T  3976415 aaatgggttccacttaaaatggtggatcatacattggttttatcaaataagagaatgagtgttgaagagagtgttgaaaatagagtgtcc 3976504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 26001562 - 26001447
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaa 120  Q
    ||||||||||| |||  | |||||||||||||| ||||  ||| || |||||||||||| |||||||||  ||| ||| ||||| ||||||| ||   ||    
T  26001562 attggcttaaaacataataggtctcacactttgaaaatgagtttcatttaaagtgatggatcatacattacttttatccaataaaagaatgaatgttgaa 26001463  T
Q  121 gagagtgttgaaaaga 136  Q
    ||||||||||||||||    
T  26001462 gagagtgttgaaaaga 26001447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 56328811 - 56328679
Alignment:
Q  20 tattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaa 119  Q
    ||||| |||||||||| ||| ||  ||||||||  |||| |||  | |||||||||  ||||||||  ||| |||||||  |||||||||||||||  ||    
T  56328811 tattgacttaaatcatagtgtgttccacactttagaaatgggtatctcttaaagtgtcgggtcataggttggtttcatccgataagagaatgagtgttaa 56328712  T
Q  120 agagagtgttgaaaagatagtgtccttagcatt 152  Q
    |||||||||||||||   |||||| ||||||||    
T  56328711 agagagtgttgaaaaacaagtgtcattagcatt 56328679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 50571953 - 50571882
Alignment:
Q  64 ccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaag 135  Q
    |||| |||| ||||||| ||||||||||||||||||||||| ||| | ||||  | ||||||||||||||||    
T  50571953 ccacataaattgatggggcatacattgatttcatctaataaaagagtaagtgctagagagagtgttgaaaag 50571882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 16318930 - 16318881
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccactta 70  Q
    |||||||||||||||| || ||||||||||||| |||| |||||||||||    
T  16318930 attggcttaaatcatgatgagtctcacactttggaaattggttccactta 16318881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 19676664 - 19676607
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatg 78  Q
    ||||| ||||||||| || |||||||||||||  |||| |||||||||||||||||||    
T  19676664 attggtttaaatcatagtaggtctcacactttaaaaatgggttccacttaaagtgatg 19676607  T

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Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 43771260 - 43771144
Alignment:
Q  18 cttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgac 117  Q
    |||||||| ||||||||| |||||||| |||||||| |||| |   ||||  | |||| |||| ||||||||||||||||| ||||| ||| ||||| |     
T  43771260 cttattggtttaaatcattgtgggtct-acactttgaaaattgaacccacacagagtggtgggacatacattgatttcatccaataaaagagtgagtcat 43771162  T
Q  118 aaagagagtgttgaaaag 135  Q
    | |||||||||| |||||    
T  43771161 agagagagtgttcaaaag 43771144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 19677386 - 19677326
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggt 81  Q
    ||||| ||||||||| || | |||||||||||| |||| |||| |||||||||||||||||    
T  19677386 attggtttaaatcatagtagatctcacactttgaaaatgggtttcacttaaagtgatgggt 19677326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 34004830 - 34004889
Alignment:
Q  56 aataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtg 115  Q
    |||||||| |||| |||||| |||||||||||||  ||||||||||||| ||||| ||||    
T  34004830 aataggtttcactaaaagtggtgggtcatacattactttcatctaataaaagaataagtg 34004889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 104
Target Start/End: Complemental strand, 51206127 - 51206092
Alignment:
Q  69 taaagtgatgggtcatacattgatttcatctaataa 104  Q
    |||||||||||| |||||||||||||||||||||||    
T  51206127 taaagtgatgggacatacattgatttcatctaataa 51206092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 20454611 - 20454558
Alignment:
Q  82 catacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaag 135  Q
    ||||||||||||| ||||||||| ||| ||||||  | ||||||||||||||||    
T  20454611 catacattgattttatctaataaaagagtgagtgctagagagagtgttgaaaag 20454558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 39401979 - 39401946
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacacttt 52  Q
    |||||||||||||||||| |||||||||||||||    
T  39401979 ttattggcttaaatcatgatgggtctcacacttt 39401946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 50481654 - 50481707
Alignment:
Q  82 catacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaag 135  Q
    ||||| ||||||||||| ||||| ||| ||||||| ||| ||||||||||||||    
T  50481654 catactttgatttcatccaataaaagagtgagtgagaaaaagagtgttgaaaag 50481707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 3888718 - 3888642
Alignment:
Q  39 gggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtg 115  Q
    |||||||||| |||| |||| ||||||||||||| |  |||| |||||||| ||||  || ||||||||| ||||||    
T  3888718 gggtctcacaatttggaaatgggttccacttaaattagtgggacatacattaattttctccaataagagagtgagtg 3888642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 43515288 - 43515340
Alignment:
Q  44 tcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttca 96  Q
    |||||||||| ||||| ||| ||||||||||| |||| |||||||| ||||||    
T  43515288 tcacactttggaaataagtttcacttaaagtggtgggacatacattaatttca 43515340  T

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Target: chr8 (Bit Score: 76; Significance: 7e-35; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 45524924 - 45525047
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaa 120  Q
    |||||||||||||||||||||| |||||||||| |||| ||||||||| |||||| |||||||||||||||||| ||| ||||||| ||||||||   ||    
T  45524924 attggcttaaatcatggtgggtttcacactttggaaatgggttccactcaaagtggtgggtcatacattgattttatccaataagaaaatgagtgttgaa 45525023  T
Q  121 gagagtgttgaaaagatagtgtcc 144  Q
    |||||||||||||||| |||||||    
T  45525024 gagagtgttgaaaagagagtgtcc 45525047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 24683703 - 24683569
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaa 120  Q
    |||||||||||||||| ||||||||||| |||| |||| |||||||||||||||| ||||||| |||||| ||| |   ||| ||| | |||||   |||    
T  24683703 attggcttaaatcatgatgggtctcacattttggaaatgggttccacttaaagtggtgggtcacacattggtttaagtcaattagaaagtgagtattaaa 24683604  T
Q  121 gagagtgttgaaaagatagtgtccttagcatttct 155  Q
    |||||||||||||||| ||||||||||||||||||    
T  24683603 gagagtgttgaaaagagagtgtccttagcatttct 24683569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 37927519 - 37927615
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtg 115  Q
    ||||||||||||||||| ||| |||||||| |||| |||||| | | ||||||||||||| ||||||||||| ||||||| || |||||||||||||    
T  37927519 ttattggcttaaatcatagtgagtctcacattttggaaatagatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatgagtg 37927615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 9008988 - 9009075
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataaga 106  Q
    ||||||||||||||||  ||| ||||||||||||| |||| ||||||||||||||||||||| |||||||| |||||| | |||||||    
T  9008988 ttattggcttaaatcaatgtgagtctcacactttgaaaatgggttccacttaaagtgatgggacatacattaatttcaccaaataaga 9009075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 28485445 - 28485523
Alignment:
Q  37 gtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtg 115  Q
    ||||||||||||||||| |||| |||||||||||||||| |||| |||||||| |||||||| ||||||||||| ||||    
T  28485445 gtgggtctcacactttggaaatgggttccacttaaagtggtgggacatacattaatttcatccaataagagaataagtg 28485523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 41668676 - 41668592
Alignment:
Q  26 cttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaat 110  Q
    ||||||| ||||||| ||||||||||| |||||  ||| |||||||||||||   |||||||||||||||||||||||| |||||    
T  41668676 cttaaataatggtggatctcacactttataaatgagtttcacttaaagtgataaatcatacattgatttcatctaataaaagaat 41668592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 11574077 - 11574200
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgaca 118  Q
    |||||||||||||||| |||||||||||||| ||| |||| |||| |||||||| |  |||| |||||| |  ||||  ||| ||||||| ||||||  |    
T  11574077 ttattggcttaaatcaaggtgggtctcacacattgaaaattggtttcacttaaaatagtgggacatacactagtttcggctattaagagagtgagtgtta 11574176  T
Q  119 aagagagtgttgaaaagatagtgt 142  Q
    ||||||||||| |||||| |||||    
T  11574177 aagagagtgttcaaaagagagtgt 11574200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 9953715 - 9953811
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtg 115  Q
    ||||||| |||||||| ||||  |||||||||||| ||||  ||||||||||||||| |||| || ||||| ||||||||  |||||||| ||||||    
T  9953715 ttattggtttaaatcaaggtgaatctcacactttggaaatgagttccacttaaagtggtgggacacacattaatttcatcccataagagagtgagtg 9953811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 42474089 - 42474010
Alignment:
Q  25 gcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataa 104  Q
    ||||||||||| ||||||||||||||||| ||||   |||||||||||||| ||||||| ||||| |||| ||| |||||    
T  42474089 gcttaaatcatagtgggtctcacactttgaaaatgaattccacttaaagtggtgggtcaaacattaattttatccaataa 42474010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 45218563 - 45218694
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgaca 118  Q
    ||||||| |||||||| |||||  |||||| |||| |||| |||||||||||||||| |||| ||  ||||||||||||| ||||| |||  |||||       
T  45218563 ttattggtttaaatcaaggtggtcctcacattttggaaatgggttccacttaaagtggtgggacacgcattgatttcatccaataaaagagcgagtg--t 45218660  T
Q  119 aagagagtgttgaaaagatagtgtccttagcatt 152  Q
     |||||||||  |||||| ||||||| |||||||    
T  45218661 tagagagtgtataaaagagagtgtccctagcatt 45218694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 38 - 143
Target Start/End: Complemental strand, 24184482 - 24184377
Alignment:
Q  38 tgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaagat 137  Q
    |||||||||||||||| |||| | ||||| ||||||||||||| ||| |||| ||||| || ||||| ||| || ||   ||| |||||||||||||||     
T  24184482 tgggtctcacactttgaaaatggattccatttaaagtgatgggacatgcattaatttcttccaataaaagagtgcgtattaaaaagagtgttgaaaagag 24184383  T
Q  138 agtgtc 143  Q
    ||||||    
T  24184382 agtgtc 24184377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 27799274 - 27799337
Alignment:
Q  41 gtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataa 104  Q
    ||||||||| ||| ||||||||||||||||||||| |||| ||||||||  ||||||| |||||    
T  27799274 gtctcacacattggaaataggttccacttaaagtggtgggacatacattagtttcatcaaataa 27799337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 14636188 - 14636091
Alignment:
Q  18 cttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtg 115  Q
    ||||||||||||||| ||| |||||||||||||||  |||| | ||||| | ||| || ||||||||| | || ||||| | ||||||| ||||||||    
T  14636188 cttattggcttaaataatgatgggtctcacactttaaaaatggtttccattcaaaatggtgggtcatataatggtttcacccaataagaaaatgagtg 14636091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 29011187 - 29011091
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtg 115  Q
    ||||||| |||||||  |||| ||| ||||||||| |||| ||||||| | |||||| | || ||||||||  ||||||| | ||||||||||||||    
T  29011187 ttattggtttaaatcgaggtgagtcacacactttggaaatgggttccattcaaagtggtaggacatacattagtttcatccattaagagaatgagtg 29011091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 155
Target Start/End: Original strand, 32022911 - 32023025
Alignment:
Q  41 gtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaagatagt 140  Q
    ||||||||||||  |||||||||| |||| ||||| || | |||||||| |||| ||  ||||| ||| ||| ||  |||||||||||| ||||   |||    
T  32022911 gtctcacactttaaaaataggttctacttgaagtggtgaggcatacattaattttattcaataaaagattgaatgttaaagagagtgtttaaaaatgagt 32023010  T
Q  141 gtccttagcatttct 155  Q
    ||||||| |||||||    
T  32023011 gtccttaacatttct 32023025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 9952854 - 9952919
Alignment:
Q  70 aaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaag 135  Q
    |||||| |||| ||| ||||||||||||| ||||| | ||||||||  | ||||||||||||||||    
T  9952854 aaagtggtgggacatgcattgatttcatccaataaaaaaatgagtgctagagagagtgttgaaaag 9952919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 13105367 - 13105483
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgaca 118  Q
    ||||||| |||||||| | |||||||||||| ||| |||| |||||| |||||| |  |||| |||||| |  ||||||||||||| |||   ||||  |    
T  13105367 ttattggtttaaatcaagatgggtctcacacattggaaatgggttcc-cttaaaatcgtgggacatacactagtttcatctaataaaagagcaagtgtta 13105465  T
Q  119 aagagagtgttgaaaaga 136  Q
    ||||||||| ||||||||    
T  13105466 aagagagtgctgaaaaga 13105483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 32072180 - 32072115
Alignment:
Q  70 aaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaag 135  Q
    |||||| |||| |||||||| |||||||| ||||| ||| ||||||  | ||||||||||||||||    
T  32072180 aaagtggtgggacatacattcatttcatccaataaaagagtgagtgctagagagagtgttgaaaag 32072115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 16314329 - 16314417
Alignment:
Q  27 ttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtg 115  Q
    |||||||| ||||||||||||| |||  |||| | ||| |||||||||| |||  |||||||| |||| ||| ||||| ||| ||||||    
T  16314329 ttaaatcaaggtgggtctcacattttaaaaatggattcaacttaaagtggtggaacatacattaattttatccaataaaagagtgagtg 16314417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 38091440 - 38091388
Alignment:
Q  84 tacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaaga 136  Q
    ||||||| ||| ||| ||||||||||||||||   ||||||||||||||||||    
T  38091440 tacattggttttatccaataagagaatgagtgttcaagagagtgttgaaaaga 38091388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 19193557 - 19193682
Alignment:
Q  27 ttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagagagt 126  Q
    |||||||||||||||||||| |||||| ||||||||| ||||||||||| |||||||||||||| ||| ||| ||||||||||||||||   ||||||||    
T  19193557 ttaaatcatggtgggtctcatactttggaaataggtttcacttaaagtggtgggtcatacattggttttatccaataagagaatgagtgttcaagagagt 19193656  T
Q  127 gttgaaaagatagtgtccttagcatt 152  Q
    |||||||||| ||||||  |||||||    
T  19193657 gttgaaaagagagtgtctctagcatt 19193682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 42669778 - 42669893
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaa 120  Q
    |||||||||||||||||||||| |||||||||| |||| |||| ||||||||||| |||||||||||||||||  ||| ||||||| ||||||||   ||    
T  42669778 attggcttaaatcatggtgggtttcacactttggaaatgggtttcacttaaagtggtgggtcatacattgattctatccaataagaaaatgagtgttgaa 42669877  T
Q  121 gagagtgttgaaaaga 136  Q
    ||||||||||||||||    
T  42669878 gagagtgttgaaaaga 42669893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 19953529 - 19953433
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtg 115  Q
    ||||||| ||||||||| ||| ||||||||||||| |||| |||||||||||||||| |||||||||||||| ||||||| ||||| ||||||||||    
T  19953529 ttattggattaaatcatagtgagtctcacactttggaaatgggttccacttaaagtggtgggtcatacattggtttcatccaataaaagaatgagtg 19953433  T

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Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 31494340 - 31494219
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgaca 118  Q
    |||||||||||||||| |||||||||||||| ||| |||| |||||||||||||||  |||| ||||||||  ||||||| ||||||||| ||||||       
T  31494340 ttattggcttaaatcaaggtgggtctcacacattggaaatgggttccacttaaagtagtgggacatacattattttcatccaataagagagtgagtg--t 31494243  T
Q  119 aagagagtgttgaaaagatagtgt 142  Q
     ||||||||||||||||| |||||    
T  31494242 tagagagtgttgaaaagagagtgt 31494219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 18949243 - 18949326
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataa 104  Q
    ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||| |||||||||| ||| ||| |||||    
T  18949243 attggcttaaatcatggtgggtctcacactttaaaaatgggttccacttaaagtgatggatcatacattggttttatccaataa 18949326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 43400267 - 43400134
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgaca 118  Q
    ||||||| |||||||| ||||||| |||||| |||  |||||||||||||||||||| |||| |||||| |  ||||||| ||||||| | ||||||  |    
T  43400267 ttattggtttaaatcaaggtgggtttcacacattgataataggttccacttaaagtggtgggacatacactagtttcatccaataagaaagtgagtgtta 43400168  T
Q  119 aagagagtgttgaaaagatagtgtccttagcatt 152  Q
     ||||||||||||||||| ||| ||| |||||||    
T  43400167 gagagagtgttgaaaagagagtatccatagcatt 43400134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 6420500 - 6420595
Alignment:
Q  18 cttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtg 115  Q
    |||||||||||||||||||||||||||||||  ||| ||||||||| |||||||| || ||||||||||||| |||||| | ||||| | ||||||||    
T  6420500 cttattggcttaaatcatggtgggtctcaca--ttggaaataggtttcacttaaaatggtgggtcatacattaatttcacccaataaaaaaatgagtg 6420595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 4024821 - 4024748
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgattt 94  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||  ||||||| | ||||||||    
T  4024821 attggcttaaatcatggtgggtctcacactttgaaaatgggttccacttaaagttgtgggtcacatattgattt 4024748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 12989325 - 12989209
Alignment:
Q  18 cttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgac 117  Q
    |||||||| ||||||||| |||||||| |||||| | ||||||  ||||   |||||| |||| ||||||||||||||||| ||| | ||| |||||||     
T  12989325 cttattggtttaaatcattgtgggtct-acacttcggaaatagaatccatacaaagtggtgggacatacattgatttcatccaatgaaagagtgagtgag 12989227  T
Q  118 aaagagagtgttgaaaag 135  Q
    ||||||||||||||||||    
T  12989226 aaagagagtgttgaaaag 12989209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 37078094 - 37077969
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgaca 118  Q
    ||||||| |||||| | |||||||||||||| ||| |||| | |||||||||||||| |||| |||||| | ||| |||| ||||||||| || |||  |    
T  37078094 ttattggtttaaattaaggtgggtctcacacattggaaatggattccacttaaagtggtgggacatacactaattacatccaataagagagtgtgtgtta 37077995  T
Q  119 aagagagtgttgaaaagatagtgtcc 144  Q
     ||| ||||||||||||| |||||||    
T  37077994 gagaaagtgttgaaaagagagtgtcc 37077969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 152
Target Start/End: Complemental strand, 20459016 - 20458914
Alignment:
Q  48 actttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaagatagtgtcctta 147  Q
    |||||| |||| ||||||||| |||||| || |||| ||| || ||||||| ||||||||||||||||   ||||||||||||  |||| ||||||||||    
T  20459016 actttgaaaatgggttccactcaaagtggtgagtcaaacaatggtttcatccaataagagaatgagtgtttaagagagtgttg--aagagagtgtcctta 20458919  T
Q  148 gcatt 152  Q
    |||||    
T  20458918 gcatt 20458914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 8163514 - 8163629
Alignment:
Q  27 ttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagagagt 126  Q
    |||||||| |||| |||||  |||||  ||||  ||| ||||||||||| |||||||||||||||||| ||| ||||| | ||||||||   || |||||    
T  8163514 ttaaatcacggtgagtctcctactttaaaaatgagtttcacttaaagtggtgggtcatacattgattttatccaataaaaaaatgagtgttgaaaagagt 8163613  T
Q  127 gttgaaaagatagtgt 142  Q
    ||| ||||||||||||    
T  8163614 gttaaaaagatagtgt 8163629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 19190764 - 19190631
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatac--attgatttcatctaataagagaatgagtgaca 118  Q
    ||||| |||||||| ||||||||| |||||||  |||| | |||||||||||||| |||  |||||  ||| |||||||| ||||||| ||||||||  |    
T  19190764 attggtttaaatcaaggtgggtctaacactttaaaaatggattccacttaaagtggtggaacatacatattaatttcatccaataagaaaatgagtgtta 19190665  T
Q  119 aagagagtgttgaaaagatagtgtccttagcatt 152  Q
     |||||||| | |||||| ||||||  |||||||    
T  19190664 gagagagtgcttaaaagagagtgtctctagcatt 19190631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 17505921 - 17505986
Alignment:
Q  85 acattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaagatagtgtccttagca 150  Q
    |||||||||||||  ||| ||||||||||||    ||||||||||||||||||||||| |||||||    
T  17505921 acattgatttcattcaattagagaatgagtgtttgagagagtgttgaaaagatagtgttcttagca 17505986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 36471947 - 36472000
Alignment:
Q  82 catacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaag 135  Q
    ||||| ||||||||||| ||||||||| |||||| || ||||||||||||||||    
T  36471947 catactttgatttcatccaataagagattgagtgtcagagagagtgttgaaaag 36472000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 45554650 - 45554585
Alignment:
Q  70 aaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaag 135  Q
    |||||| |||| ||||||||||||||||| ||||| ||| ||||||  | ||||||||||||||||    
T  45554650 aaagtggtgggacatacattgatttcatccaataaaagagtgagtgctagagagagtgttgaaaag 45554585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 9470215 - 9470100
Alignment:
Q  18 cttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgac 117  Q
    |||||||| ||||||||| |||||||| |||||||| |||| |   |||   |||||| |||| ||||||||||||||||| ||||| ||| ||||||      
T  9470215 cttattggtttaaatcattgtgggtct-acactttgaaaattgaacccaaacaaagtggtgggacatacattgatttcatccaataaaagagtgagtgtt 9470117  T
Q  118 aaagagagtgttgaaaa 134  Q
    | |||||| ||||||||    
T  9470116 agagagagcgttgaaaa 9470100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 34375392 - 34375472
Alignment:
Q  18 cttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatc 98  Q
    |||||| |||||||| | ||||||||| |||| || |||||  ||||  ||||||||| ||||||||||||| ||||||||    
T  34375392 cttattagcttaaattaaggtgggtcttacacattataaatgagttcggcttaaagtggtgggtcatacattaatttcatc 34375472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 3804669 - 3804602
Alignment:
Q  69 taaagtgatgggt-catacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaag 135  Q
    ||||||||||||  ||||||||||||||||| ||||| ||| ||| ||  ||||||||||||||||||    
T  3804669 taaagtgatggggacatacattgatttcatccaataaaagagtgaatgttaaagagagtgttgaaaag 3804602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 38464297 - 38464164
Alignment:
Q  18 cttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgac 117  Q
    |||||||| ||||||||| |||||||| |||||||| |||| |   ||||  ||||||||| | ||||||||||||||||  ||||| | | | | || |    
T  38464297 cttattggtttaaatcattgtgggtct-acactttgaaaattgaacccacgcaaagtgatgagacatacattgatttcatacaataaaaaagtaattgtc 38464199  T
Q  118 aaagagagtgttgaaaagatagtgtccttagcatt 152  Q
    | ||||||||||||||||  | ||| |||||||||    
T  38464198 agagagagtgttgaaaagtgaatgttcttagcatt 38464164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 30706400 - 30706307
Alignment:
Q  22 ttggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtg 115  Q
    |||| |||||| | ||||||||||| || ||| ||||  |||||| ||||| || || | |||||||| |||||||| ||||||||| ||||||    
T  30706400 ttggtttaaattaaggtgggtctcatacattgaaaatgagttccatttaaactggtgagacatacattaatttcatcaaataagagagtgagtg 30706307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 35523417 - 35523381
Alignment:
Q  119 aagagagtgttgaaaagatagtgtccttagcatttct 155  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  35523417 aagagagtgttgaaaagagagtgtccctagcatttct 35523381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 2911895 - 2911771
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgaca 118  Q
    |||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||| |||||||||| |||  ||  ||||||||||||||||       
T  2911895 ttattggcttaaatcatggtggatctcacactttagaaataggttccacttaaagtgatgagtcatacattaattatattcaataagagaatgagtgttg 2911796  T
Q  119 aagagagtgttgaaaagatagtgtc 143  Q
    |||| ||||||||||||| ||||||    
T  2911795 aagatagtgttgaaaagagagtgtc 2911771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 46994409 - 46994494
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataa 104  Q
    ||||||||||||||||||||||||||||||||||| |||| | |  ||||||||||| ||||||||||||||||||||||||||||    
T  46994409 ttattggcttaaatcatggtgggtctcacactttggaaatggatatcacttaaagtggtgggtcatacattgatttcatctaataa 46994494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 23434829 - 23434697
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgaca 118  Q
    |||||||||||||| |||||||||||||||||||  ||||  |||| |||||||||| ||| |||||||||| ||| ||| ||||||||||||||||       
T  23434829 ttattggcttaaattatggtgggtctcacactttagaaatgtgttc-acttaaagtggtggatcatacattggttttatccaataagagaatgagtgttg 23434731  T
Q  119 aagagagtgttgaaaagatagtgtccttagcatt 152  Q
    ||||||||||||||||   ||||||| |||||||    
T  23434730 aagagagtgttgaaaaaggagtgtccctagcatt 23434697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 24845478 - 24845547
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattg 90  Q
    ||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| ||||||| ||||||    
T  24845478 attggcttaaatcatggtgagtctcacactttggaaatgggttccacttaaagtggtgggtcacacattg 24845547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 44350287 - 44350218
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattg 90  Q
    ||||||||||||||||||||||||||||||||| |||| | ||||||||||| || ||||||| ||||||    
T  44350287 attggcttaaatcatggtgggtctcacactttggaaatggattccacttaaaatggtgggtcacacattg 44350218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 152
Target Start/End: Original strand, 4090035 - 4090156
Alignment:
Q  29 aaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagagagtgt 128  Q
    ||||||||||| ||||||||||||  |||| ||| ||||  |||||||||||||||| |||||||||||| ||||| | ||| ||||  ||||||| |||    
T  4090035 aaatcatggtgagtctcacactttagaaatgggtaccac--aaagtgatgggtcatagattgatttcatccaataaaaaaataagtgttaaagagaatgt 4090132  T
Q  129 tgaaaagatagtgtccttagcatt 152  Q
    |||||| | | || ||||||||||    
T  4090133 tgaaaaaagaatgcccttagcatt 4090156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 6688283 - 6688369
Alignment:
Q  157 ccaataaatttagctcccaatactcttcaagaacatcccctaaaaatttctctcattcaccctcttataatcacttaataattttcact 245  Q
    |||||||||||||||| ||||| ||| ||||||||||||||  |||||||||||||| ||| |||||||||| || ||  |||||||||    
T  6688283 ccaataaatttagctctcaatattctccaagaacatcccct--aaatttctctcatttaccatcttataatcgctcaaagattttcact 6688369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 33852559 - 33852621
Alignment:
Q  62 ttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagaga 124  Q
    |||||||||||||| |||| |||||| | |||||||||||||||||||||||||  |||||||    
T  33852559 ttccacttaaagtggtgggacatacactaatttcatctaataagagaatgagtgttaaagaga 33852621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 32721014 - 32721067
Alignment:
Q  60 ggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgag 113  Q
    ||||||||||||| ||||||||||||||||||||| ||| ||||| ||||||||    
T  32721014 ggttccacttaaattgatgggtcatacattgattttatccaataaaagaatgag 32721067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 20954813 - 20954726
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataaga 106  Q
    ||||||||||||||||||||| ||||||||||||  ||||  |||||| | |||||  ||||| ||||||| |||||| | |||||||    
T  20954813 ttattggcttaaatcatggtgagtctcacactttagaaatgagttccattcaaagtagtgggttatacattaatttcaccgaataaga 20954726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 22190072 - 22189958
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgaca 118  Q
    ||||||| ||||||||| | |||||| |||||||| |||| |   ||||  |||||| |||| ||||||||||||||||| ||||| ||| ||||||  |    
T  22190072 ttattggtttaaatcattgcgggtct-acactttgaaaattgaacccacacaaagtggtgggccatacattgatttcatccaataaaagagtgagtgcta 22189974  T
Q  119 aagagagtgttgaaaa 134  Q
     |||||||||||||||    
T  22189973 gagagagtgttgaaaa 22189958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 12263482 - 12263598
Alignment:
Q  18 cttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgac 117  Q
    |||||||| ||||||||| |||||||| |||||||| |||| | | | ||  ||||||||||| |||||||||||| ||||  |||| ||| ||  |||     
T  12263482 cttattggtttaaatcattgtgggtct-acactttgaaaattgatcctacacaaagtgatgggacatacattgattccatccgataaaagagtggatgat 12263580  T
Q  118 aaagagagtgttgaaaag 135  Q
    | ||||||||||||||||    
T  12263581 agagagagtgttgaaaag 12263598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 17354600 - 17354669
Alignment:
Q  46 acactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtg 115  Q
    |||||||| ||||||   |||| ||||||| |||| ||||||||||||||||| ||||| ||||||||||    
T  17354600 acactttggaaatagaacccacataaagtggtgggacatacattgatttcatccaataaaagaatgagtg 17354669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 27 - 136
Target Start/End: Complemental strand, 39523701 - 39523592
Alignment:
Q  27 ttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagagagt 126  Q
    |||||||| ||||| |||||||  ||| |||| |||||||||||||||| || | |||||  |  ||||||| ||||| ||||||||||  | | |||||    
T  39523701 ttaaatcaaggtggatctcacatattggaaatgggttccacttaaagtggtgagacataccctagtttcatccaataaaagaatgagtgttagacagagt 39523602  T
Q  127 gttgaaaaga 136  Q
    ||||||||||    
T  39523601 gttgaaaaga 39523592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 7775083 - 7775019
Alignment:
Q  70 aaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaa 134  Q
    |||||| |||| ||||||||||||||||| ||||| ||| ||||||  | |||||||||||||||    
T  7775083 aaagtggtgggacatacattgatttcatccaataaaagagtgagtgctatagagagtgttgaaaa 7775019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 24681731 - 24681643
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagag 107  Q
    |||||| ||||||||| |  ||||||||||||||  ||||  ||   ||||||||||||||| |||||||| |||||||||||| ||||    
T  24681731 ttattgacttaaatcaagacgggtctcacactttaaaaatgagtcttacttaaagtgatgggacatacattaatttcatctaatgagag 24681643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 35549696 - 35549827
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgaca 118  Q
    |||||||||||  ||||||||| || ||  ||||| |||| ||||||||  ||| || ||| || ||||||| ||||||| ||||| || || ||||  |    
T  35549696 ttattggcttatttcatggtggatcccatgctttgaaaatgggttccacaaaaaatggtggatcctacattggtttcatccaataaaaggataagtgtta 35549795  T
Q  119 aagagagtgttgaaaagatagtgtccttagca 150  Q
    | | |||||||||||||| ||||||| |||||    
T  35549796 aggggagtgttgaaaagagagtgtccctagca 35549827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 11789821 - 11789904
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataa 104  Q
    ||||||| |||||||| |||||||||||||  ||| ||||   ||||||| |||||| |||| ||||||||  |||||||||||||    
T  11789821 ttattggtttaaatcaaggtgggtctcaca--ttggaaatgaattccactaaaagtggtgggacatacattactttcatctaataa 11789904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 19422938 - 19422996
Alignment:
Q  77 tgggtcatacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaag 135  Q
    |||| ||||||||||||||||| ||| | ||| ||||||| | ||||||||||||||||    
T  19422938 tgggacatacattgatttcatccaatgaaagagtgagtgatagagagagtgttgaaaag 19422996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 44511033 - 44511098
Alignment:
Q  70 aaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaag 135  Q
    ||||||||| | ||||||||||||||||| ||||| | | ||||||  | ||||||||||||||||    
T  44511033 aaagtgatgagacatacattgatttcatccaataaaaaagtgagtgctagagagagtgttgaaaag 44511098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 29462076 - 29462144
Alignment:
Q  47 cactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtg 115  Q
    ||||||| ||||  ||||||||||||||  || ||||||||||||||| ||  ||||| ||||||||||    
T  29462076 cactttggaaatgtgttccacttaaagtagtgagtcatacattgattttattcaataaaagaatgagtg 29462144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 25 - 144
Target Start/End: Complemental strand, 25326959 - 25326840
Alignment:
Q  25 gcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagaga 124  Q
    |||||||| ||||||||| |  ||||||| |||| |||||||||||||||| |||||||||||||||||| ||| ||||||| ||||||||   ||||||    
T  25326959 gcttaaattatggtgggttttgcactttggaaatgggttccacttaaagtggtgggtcatacattgattttatccaataagaaaatgagtgttgaagaga 25326860  T
Q  125 gtgttgaaaagatagtgtcc 144  Q
    |||||||||||| |||||||    
T  25326859 gtgttgaaaagagagtgtcc 25326840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 25 - 144
Target Start/End: Complemental strand, 26159494 - 26159375
Alignment:
Q  25 gcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagaga 124  Q
    |||||||| ||||||||| |  ||||||| |||| |||||||||||||||| |||||||||||||||||| ||| ||||||| ||||||||   ||||||    
T  26159494 gcttaaattatggtgggttttgcactttggaaatgggttccacttaaagtggtgggtcatacattgattttatccaataagaaaatgagtgttgaagaga 26159395  T
Q  125 gtgttgaaaagatagtgtcc 144  Q
    |||||||||||| |||||||    
T  26159394 gtgttgaaaagagagtgtcc 26159375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 26170944 - 26171033
Alignment:
Q  26 cttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtg 115  Q
    ||||||| ||||||||| |||||||||| |||| |||||||||||||||| |||||||||||||||||| ||| ||||||| ||||||||    
T  26170944 cttaaattatggtgggtttcacactttggaaatgggttccacttaaagtggtgggtcatacattgattttatccaataagaaaatgagtg 26171033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 12690387 - 12690253
Alignment:
Q  18 cttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgac 117  Q
    |||||||| |||||||| |||||||||||||||||| |||||| |||||||||||||| || | ||| |||| |||||||| ||||| |||   ||||      
T  12690387 cttattggtttaaatcaaggtgggtctcacactttggaaatagattccacttaaagtggtgagacatgcattaatttcatccaataaaagagcaagtgtt 12690288  T
Q  118 aaagagagtgttgaaaagatagtgtccttagcatt 152  Q
    | |||||||||| |||| | ||||||| |||||||    
T  12690287 agagagagtgtttaaaatagagtgtccctagcatt 12690253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 31947261 - 31947386
Alignment:
Q  27 ttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagagagt 126  Q
    |||||||||| |||| |||| |||||| ||||  || ||| ||||| || || || |||||||  ||||||| |||||||||||||  | | |||| |||    
T  31947261 ttaaatcatgatgggcctcatactttgaaaatgagtaccatttaaaatggtgagttatacatttgtttcatccaataagagaatgaacgtcgaagaaagt 31947360  T
Q  127 gttgaaaagatagtgtccttagcatt 152  Q
    ||||||||||||||||||||||||||    
T  31947361 gttgaaaagatagtgtccttagcatt 31947386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 29610301 - 29610416
Alignment:
Q  37 gtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaaga 136  Q
    ||||||||||||| ||  |||| |||||||||||||||| |||| |||||||| |||| | ||||||||  | ||||||    |||||||||||||||||    
T  29610301 gtgggtctcacacattagaaattggttccacttaaagtggtgggacatacattcatttaaactaataagcaagtgagtgtttgagagagtgttgaaaaga 29610400  T
Q  137 tagtgtccttagcatt 152  Q
     |||||| ||||||||    
T  29610401 gagtgtcattagcatt 29610416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 147
Target Start/End: Original strand, 6163567 - 6163693
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaa 120  Q
    ||||||||||||||| ||| ||||||||||||| ||||  |||| |||||||||| ||||||| |||||| ||| | | ||| | | ||||||||   ||    
T  6163567 attggcttaaatcatagtgcgtctcacactttggaaatgagttctacttaaagtggtgggtcaaacattggtttaagccaattaaaaaatgagtgtagaa 6163666  T
Q  121 gagagtgttgaaaagatagtgtcctta 147  Q
     | ||| ||||||||| ||||||||||    
T  6163667 aaaagtcttgaaaagagagtgtcctta 6163693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 34905470 - 34905355
Alignment:
Q  18 cttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgac 117  Q
    |||||||| ||||||||| |||||||| |||||||| |||| |   |||   |||||| |||| ||||||||||||||||| ||||| ||| ||||||      
T  34905470 cttattggtttaaatcattgtgggtct-acactttgaaaattgaacccaaacaaagtggtgggacatacattgatttcatccaataaaagagtgagtgtt 34905372  T
Q  118 aaagagagtgttgaaaa 134  Q
    | |||||||||||||||    
T  34905371 agagagagtgttgaaaa 34905355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 28274920 - 28274795
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgaca 118  Q
    ||||||| |||||||| |||||||||||||| ||| |||| |||||||||||| |||||||| |||||| |  ||||||| ||||||||| ||||||  |    
T  28274920 ttattggtttaaatcaaggtgggtctcacacattggaaatgggttccacttaaggtgatgggacatacactagtttcatccaataagagagtgagtgtta 28274821  T
Q  119 aagagagtgttgaaaagatagtgtcc 144  Q
     ||||||||||||||||| |||||||    
T  28274820 gagagagtgttgaaaagagagtgtcc 28274795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 37 - 155
Target Start/End: Complemental strand, 18157154 - 18157036
Alignment:
Q  37 gtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaaga 136  Q
    ||||||||||||||||| ||||  ||||||||||||||| |||| |||||||| |||||||| ||||| | | || |||  | |||||||||||||||||    
T  18157154 gtgggtctcacactttggaaatgtgttccacttaaagtggtgggacatacattaatttcatccaataaaaaagtgggtgttagagagagtgttgaaaaga 18157055  T
Q  137 tagtgtccttagcatttct 155  Q
     ||||||| ||||||||||    
T  18157054 gagtgtccctagcatttct 18157036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 18473781 - 18473647
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaa 120  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||  |||||| | |||| ||| |   ||| ||| | ||||||   ||    
T  18473781 attggcttaaatcatggtgggtctcacactttgaaaatgggttccacttaaagtggcgggtcacatattggtttaagtcaattagaaagtgagtgttgaa 18473682  T
Q  121 gagagtgttgaaaagatagtgtccttagcatttct 155  Q
    |||||||||||||||| ||||||  ||||||||||    
T  18473681 gagagtgttgaaaagagagtgtctctagcatttct 18473647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 1468566 - 1468443
Alignment:
Q  27 ttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagagagt 126  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||||||||||   |||||| |  ||| ||| ||||||||| ||||||    |||||||    
T  1468566 ttaaatcaaggtgggtctcacacattggaaataggttccacttaaagtgatgaaacatacactagtttaatccaataagagagtgagtg--ttagagagt 1468469  T
Q  127 gttgaaaagatagtgtccttagcatt 152  Q
    ||||||| || ||||||| |||||||    
T  1468468 gttgaaatgagagtgtccctagcatt 1468443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 11247902 - 11247833
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattg 90  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||| || ||| ||| ||||||    
T  11247902 attggcttaaatcatggtgggtctcacactttgaaaatgggttccacttaaaatggtggatcacacattg 11247833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 21977321 - 21977188
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgaca 118  Q
    ||||||| |||||||| | | |||||||||| ||| |||| |||||||||||||||  |||| ||||||||  ||||||| ||||||| | |||||   |    
T  21977321 ttattggtttaaatcaagataggtctcacacattggaaatgggttccacttaaagtagtgggacatacattagtttcatcaaataagaaagtgagtttta 21977222  T
Q  119 aagagagtgttgaaaagatagtgtccttagcatt 152  Q
     ||||||||||||||||| | ||||| |||||||    
T  21977221 gagagagtgttgaaaagagaatgtccctagcatt 21977188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 18953210 - 18953335
Alignment:
Q  18 cttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgac 117  Q
    |||||| |||||||||||||||| |||||||||||  |||  |||||||| |||| || ||| |||||||||| ||||||| ||||| | ||||||||      
T  18953210 cttatttgcttaaatcatggtggatctcacactttagaaacgggttccac-taaaatggtggatcatacattggtttcatccaataaaaaaatgagtgtt 18953308  T
Q  118 aaagagagtgttgaaaagatagtgtcc 144  Q
     |||| ||| ||||| |||||||||||    
T  18953309 gaagaaagtcttgaagagatagtgtcc 18953335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 5602606 - 5602695
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagaga 108  Q
    ||||||| |||||| |  ||||||||||||||||| ||||| ||| ||||||||||| |||| |||| ||| |||||||| |||||||||    
T  5602606 ttattggtttaaattaaagtgggtctcacactttggaaataagtttcacttaaagtggtgggacatatattaatttcatccaataagaga 5602695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 21970324 - 21970420
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtg 115  Q
    ||||||| |||||||| | |||||||||||| ||| |||| |||||||||||||||| |||| |||||| |  ||||||  ||||||||| ||||||    
T  21970324 ttattggtttaaatcaagatgggtctcacacattgaaaatgggttccacttaaagtggtgggacatacactagtttcattcaataagagagtgagtg 21970420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 42 - 152
Target Start/End: Original strand, 14340990 - 14341100
Alignment:
Q  42 tctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaagatagtg 141  Q
    |||||||  ||| |||| |||||||||||||||| |||| |||| |||  ||||||| ||||| | ||||||||  | ||||||||||||||||| ||||    
T  14340990 tctcacatattggaaatgggttccacttaaagtggtgggacatatattagtttcatccaataaaaaaatgagtgttagagagagtgttgaaaagaaagtg 14341089  T
Q  142 tccttagcatt 152  Q
    || ||| ||||    
T  14341090 tcattaacatt 14341100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 15741860 - 15741950
Alignment:
Q  25 gcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtg 115  Q
    ||||||||||| | ||||||||||||||| ||||  ||| ||||||||||||| | |||||||||| ||| ||| ||||||  ||||||||    
T  15741860 gcttaaatcatagcgggtctcacactttggaaatgagtttcacttaaagtgatcgatcatacattggttttatccaataagttaatgagtg 15741950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 33234538 - 33234470
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacatt 89  Q
    |||||||||||| ||||||| |||||||||||  |||| |||| ||||||||||| || ||||||||||    
T  33234538 attggcttaaattatggtggatctcacactttagaaatgggtttcacttaaagtggtgagtcatacatt 33234470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 152
Target Start/End: Original strand, 40125906 - 40126018
Alignment:
Q  40 ggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaagatag 139  Q
    |||||||||||||| |||| | |||||||||||||| |||||||||||||  ||| ||| ||||| | ||| | ||  ||||| || ||| |||| ||||    
T  40125906 ggtctcacactttggaaatggattccacttaaagtggtgggtcatacattagttttatccaataaaaaaataaatgttaaagaaagcgttaaaaaaatag 40126005  T
Q  140 tgtccttagcatt 152  Q
    |||||||| ||||    
T  40126006 tgtccttaacatt 40126018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 2593038 - 2592965
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgat 92  Q
    |||||| ||||||| | |||||||||||||||||  |||| | |||||||||||||| || |||||||| ||||    
T  2593038 ttattgacttaaataaaggtgggtctcacactttaaaaatggattccacttaaagtggtgagtcatacactgat 2592965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 7549718 - 7549649
Alignment:
Q  21 attggcttaaatcatggtgggtctcacacttt-gtaaataggttccacttaaagtgatgggtcatacatt 89  Q
    |||||||||||| |||||| |||||||||||| | ||||  ||||||||||||||| | |||||||||||    
T  7549718 attggcttaaattatggtgagtctcacactttggaaaatgtgttccacttaaagtggttggtcatacatt 7549649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 46793011 - 46792979
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactt 51  Q
    |||||||||||||||||||||||||||||||||    
T  46793011 ttattggcttaaatcatggtgggtctcacactt 46792979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 25010126 - 25010005
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgaca 118  Q
    |||||||||||||| || |||| |||||||||||  |||| ||||||| | ||| |  | ||| ||||| || ||||||| ||||||||||||||||       
T  25010126 ttattggcttaaattatagtgg-tctcacactttagaaatgggttccattcaaaatagtaggtaatacaatggtttcatccaataagagaatgagtgttg 25010028  T
Q  119 aagagagtgttgaaaagatagtg 141  Q
    |||  ||||||||||||| ||||    
T  25010027 aaggaagtgttgaaaagagagtg 25010005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 31602120 - 31602076
Alignment:
Q  92 tttcatctaataagagaatgagtgacaaagagagtgttgaaaaga 136  Q
    ||||||| ||||||||||||||||  | |||||||||||||||||    
T  31602120 tttcatccaataagagaatgagtgttagagagagtgttgaaaaga 31602076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 7e-26; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 10300019 - 10299883
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgaca 118  Q
    ||||||| ||||| |||||||| ||| |||||||| |||| ||| ||||| |||||| |||||||| |||||  |||||| ||||||||||||||||       
T  10300019 ttattggtttaaagcatggtggatcttacactttggaaatgggtcccactaaaagtggtgggtcatgcattgggttcatccaataagagaatgagtgttg 10299920  T
Q  119 aagagagtgttgaaaagatagtgtccttagcatttct 155  Q
    |||||||||||||||||| ||| ||| ||||||||||    
T  10299919 aagagagtgttgaaaagagagtatccctagcatttct 10299883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 20526889 - 20526764
Alignment:
Q  18 cttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgac 117  Q
    |||||| |||||||||||| ||||| ||| |||||| |||| |||| |||  |||||||||||||||  |||||||||||| || |||||||| ||||      
T  20526889 cttattagcttaaatcatgttgggtttcaaactttgaaaatgggtttcacgaaaagtgatgggtcatgtattgatttcatcaaacaagagaataagtgtt 20526790  T
Q  118 aaagagagtgttgaaaagatagtgtc 143  Q
    ||||| ||||||||||||| ||||||    
T  20526789 aaagaaagtgttgaaaagagagtgtc 20526764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 43461423 - 43461507
Alignment:
Q  28 taaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatga 112  Q
    |||||||||||||||||||||||||| | || ||||||||| |||||||||||||||||||||  |||||| ||| | |||||||    
T  43461423 taaatcatggtgggtctcacactttgaatatgggttccactaaaagtgatgggtcatacattgcattcatccaatgacagaatga 43461507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 41034478 - 41034529
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaa 72  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  41034478 attggcttaaatcatggtgggtctcacactttggaaatgggttccacttaaa 41034529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 25002054 - 25002123
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattg 90  Q
    ||||| ||||||||| ||||||||||||||||| |||| || ||||||||||||| ||||||| ||||||    
T  25002054 attggtttaaatcatagtgggtctcacactttggaaatgggctccacttaaagtggtgggtcacacattg 25002123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 36325569 - 36325501
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattg 90  Q
    |||||||||||||||||||||||| |||||||  |||| |||||||||||||||| ||||||| ||||||    
T  36325569 attggcttaaatcatggtgggtcttacacttt-aaaatgggttccacttaaagtggtgggtcacacattg 36325501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 1649662 - 1649559
Alignment:
Q  40 ggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaagatag 139  Q
    |||||||||||||  |||| |||||||||||||||| | |  |||||||| |||||||| ||||||| | ||||||  | ||||||||||||||||| ||    
T  1649662 ggtctcacactttaaaaat-ggttccacttaaagtggtagagcatacattaatttcatccaataagatagtgagtgttagagagagtgttgaaaagagag 1649564  T
Q  140 tgtcc 144  Q
    |||||    
T  1649563 tgtcc 1649559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 152
Target Start/End: Complemental strand, 32309596 - 32309481
Alignment:
Q  37 gtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaaga 136  Q
    |||| |||||||||||| |||| |||| ||||| ||||| | || |||||||| |||| ||| ||||||||| ||||||  | ||||| |||||||||||    
T  32309596 gtggatctcacactttgaaaatgggtttcacttgaagtggtcggacatacattaattttatccaataagagagtgagtgctagagagaatgttgaaaaga 32309497  T
Q  137 tagtgtccttagcatt 152  Q
     ||||||  |||||||    
T  32309496 gagtgtctctagcatt 32309481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 7585112 - 7585024
Alignment:
Q  27 ttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtg 115  Q
    |||||| | |||| ||||||||| ||| |||| |||| ||||||||||||| || |||||| |  ||||||| ||||||||||||||||    
T  7585112 ttaaattaaggtgagtctcacacattggaaatgggtttcacttaaagtgataggacatacactagtttcatccaataagagaatgagtg 7585024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 6529923 - 6530012
Alignment:
Q  22 ttggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatg 111  Q
    ||||||||||| | |||| ||||||||| ||  |||| ||||||||| ||| || |||| ||||||||  ||||||| ||||||||||||    
T  6529923 ttggcttaaattaaggtgagtctcacacattagaaatgggttccactaaaaatggtgggacatacattagtttcatccaataagagaatg 6530012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 5413784 - 5413878
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagt 114  Q
    ||||||| |||||||||  ||||||| ||||||||||||| |   ||||  |||||| |||| ||||||||||||||||| ||||| ||| |||||    
T  5413784 ttattggtttaaatcattatgggtct-acactttgtaaattgaacccacacaaagtggtgggacatacattgatttcatccaataaaagagtgagt 5413878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 5630628 - 5630553
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgattt 94  Q
    |||||||||||||| ||||||||||||| |||||| |||| | || || | ||| || ||||||||||| ||||||    
T  5630628 ttattggcttaaattatggtgggtctcatactttgaaaatggatttcattcaaaatggtgggtcatacaatgattt 5630553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 17537206 - 17537264
Alignment:
Q  77 tgggtcatacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaag 135  Q
    |||| ||||||||||||| ||| ||||| ||| ||||||| | ||||||||||||||||    
T  17537206 tgggacatacattgatttgatcaaataaaagagtgagtgatagagagagtgttgaaaag 17537264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 42224682 - 42224760
Alignment:
Q  64 ccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaagatagtgt 142  Q
    |||| ||||||| |||| ||||||||||||||| ||||||| ||| ||||||  | |||||||| | |||||| |||||    
T  42224682 ccacataaagtggtgggacatacattgatttcacctaataaaagagtgagtgctagagagagtgctcaaaagagagtgt 42224760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 23260220 - 23260289
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattg 90  Q
    |||| |||||||||| ||| ||||||||||||  |||| | ||||||||||| || ||||||| ||||||    
T  23260220 attgacttaaatcatagtgtgtctcacactttagaaatggattccacttaaaatggtgggtcacacattg 23260289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 43405464 - 43405412
Alignment:
Q  82 catacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaa 134  Q
    ||||||||||||||||  ||||| ||| |||||||||||||| ||||| ||||    
T  43405464 catacattgatttcattcaataaaagagtgagtgacaaagagcgtgttaaaaa 43405412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 22813317 - 22813435
Alignment:
Q  18 cttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgac 117  Q
    |||||||||||||||||||||| ||||||||||||  |||| ||||||||| |||||| ||||||||||||||  |||||| ||| ||| ||||||||      
T  22813317 cttattggcttaaatcatggtgagtctcacactttcgaaatgggttccactaaaagtggtgggtcatacattgcattcatccaatgagaaaatgagtgtt 22813416  T
Q  118 aaagagagtgttgaaaaga 136  Q
     ||||||||||| ||||||    
T  22813417 caagagagtgttaaaaaga 22813435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 21 - 134
Target Start/End: Original strand, 10798325 - 10798438
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaa 120  Q
    |||||||||||| || |||||||||| |||||| ||||  ||||||||||||||| |||||||||||||| ||| ||| |||| ||||||||||   |||    
T  10798325 attggcttaaattattgtgggtctcatactttggaaatgagttccacttaaagtggtgggtcatacattggttttatccaatacgagaatgagtcttaaa 10798424  T
Q  121 gagagtgttgaaaa 134  Q
     |||||||||||||    
T  10798425 aagagtgttgaaaa 10798438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 7791960 - 7791826
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaa 120  Q
    ||||||||||||||  ||||||||||||||||| |||||| |||||||||||||| ||||||| |||||| ||| | | ||| ||| | |||| |   ||    
T  7791960 attggcttaaatcacagtgggtctcacactttggaaatagattccacttaaagtggtgggtcacacattggtttaagccaattagaaagtgagcgttgaa 7791861  T
Q  121 gagagtgttgaaaagatagtgtccttagcatttct 155  Q
    || ||||||||||||| ||||||| || |||||||    
T  7791860 gaaagtgttgaaaagagagtgtccctaacatttct 7791826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 10817362 - 10817457
Alignment:
Q  18 cttattggcttaaatcatggtgggtctcacactttgtaaa-taggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatga 112  Q
    |||||| |||||||||| ||||| ||| |||||||| ||| |||||||||||||||||||| ||||||| ||| |||| |||| ||||||||||||    
T  10817362 cttattcgcttaaatcagggtggatctgacactttgaaaaataggttccacttaaagtgataggtcatagattaattttatctgataagagaatga 10817457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 44911653 - 44911760
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaa 120  Q
    |||||||||||||||||||||||||| |||||  ||||| |||||||||||| || || |||||| |||||||| ||| ||||| | ||| ||||  |||    
T  44911653 attggcttaaatcatggtgggtctcatactttagaaatatgttccacttaaattggtgtgtcatatattgattttatccaataaaaaaataagtgttaaa 44911752  T
Q  121 gagagtgt 128  Q
    ||||||||    
T  44911753 gagagtgt 44911760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 152
Target Start/End: Complemental strand, 214149 - 214036
Alignment:
Q  38 tgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaagat 137  Q
    |||||||||||||||| |||  |  |||| |||||||| ||||||||| |||| ||| ||| ||||||||||||||||   ||||||||||||||||||     
T  214149 tgggtctcacactttggaaagggactccatttaaagtggtgggtcatatattggttt-atccaataagagaatgagtgttgaagagagtgttgaaaagag 214051  T
Q  138 agtgtccttagcatt 152  Q
    |||||| ||||||||    
T  214050 agtgtctttagcatt 214036  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 7640640 - 7640774
Alignment:
Q  18 cttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgac 117  Q
    |||||||| || ||||| |||| ||||||||||| | ||||||||||||||||| ||| | || |||||||| |||||||| ||||||| |   ||||      
T  7640640 cttattggtttcaatcaaggtgagtctcacacttaggaaataggttccacttaatgtggtaggacatacattaatttcatccaataagaaagcaagtgtt 7640739  T
Q  118 aaagagagtgttgaaaagatagtgtccttagcatt 152  Q
    | || |||||||||||||| ||||||| |||||||    
T  7640740 agagtgagtgttgaaaagagagtgtccctagcatt 7640774  T

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Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 49720047 - 49720181
Alignment:
Q  18 cttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgac 117  Q
    |||||| | |||||| | |||||||||||||||||| |||| ||||||||||||| || ||||  ||||||| |||| ||| ||||||  | ||||||      
T  49720047 cttattagtttaaatgaaggtgggtctcacactttggaaatgggttccacttaaaatggtgggatatacattcatttaatccaataagcaagtgagtgtt 49720146  T
Q  118 aaagagagtgttgaaaagatagtgtccttagcatt 152  Q
      ||||||||||||||||  |||||||||||||||    
T  49720147 tgagagagtgttgaaaagtgagtgtccttagcatt 49720181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 34706634 - 34706703
Alignment:
Q  25 gcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgattt 94  Q
    |||||||||||||||| |||||||||||| |||| |||||| ||||||||| ||||||| ||||||||||    
T  34706634 gcttaaatcatggtggatctcacactttggaaatgggttccgcttaaagtggtgggtcacacattgattt 34706703  T

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Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 44225881 - 44225977
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtg 115  Q
    ||||||| |||||| | | |||||||||||| ||| |||| ||||||||||||||||||||| |||||| |  ||||||| ||||||||| ||||||    
T  44225881 ttattggtttaaataaagctgggtctcacacattgaaaatgggttccacttaaagtgatgggacatacactagtttcatccaataagagagtgagtg 44225977  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 38169039 - 38169156
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacatt-gatttcatctaataagagaatgagtgac 117  Q
    |||||||||||||||||||| | ||||| ||||||||||| | || |||||||||||| || ||||||||| ||||| ||| ||||| | ||||||||      
T  38169039 ttattggcttaaatcatggtagatctcaaactttgtaaatggttttcacttaaagtgacggatcatacattagattt-atccaataaaaaaatgagtgtt 38169137  T
Q  118 aaagagagtgttgaaaaga 136  Q
     |||| |||||||||||||    
T  38169138 gaagatagtgttgaaaaga 38169156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 9774291 - 9774214
Alignment:
Q  27 ttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataa 104  Q
    |||||| | ||||||||||||| |||| |||| |||||||||||||||| |||| | |||||| |||||||| |||||    
T  9774291 ttaaattaaggtgggtctcacattttgaaaattggttccacttaaagtggtgggacgtacattaatttcatccaataa 9774214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 46205580 - 46205649
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattg 90  Q
    ||||||| |||||||||| |||||||||||||| ||||  ||||||||||||||||| | ||| ||||||    
T  46205580 attggctgaaatcatggtaggtctcacactttggaaatgagttccacttaaagtgatagatcacacattg 46205649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 53655455 - 53655524
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattg 90  Q
    ||||||||||||||| || | |||||||||||| |||| ||||||||||||| || ||||||| ||||||    
T  53655455 attggcttaaatcatagttgatctcacactttgaaaatgggttccacttaaaatggtgggtcacacattg 53655524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 28529385 - 28529271
Alignment:
Q  18 cttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgac 117  Q
    |||||||| ||||||||| |||||||| |||||||| |||| |   ||||  | |||| |||| ||||||||||||||||| ||||| ||| ||||||      
T  28529385 cttattggtttaaatcattgtgggtct-acactttgaaaattgaacccac--acagtggtgggacatacattgatttcatccaataaaagagtgagtgct 28529289  T
Q  118 aaagagagtgttgaaaag 135  Q
    | ||||||||||||||||    
T  28529288 agagagagtgttgaaaag 28529271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 42780739 - 42780673
Alignment:
Q  84 tacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaagatagtgtccttagca 150  Q
    ||||| ||||||||| ||||||||||||||||  | ||||||||||  ||||||||||||| |||||    
T  42780739 tacatggatttcatccaataagagaatgagtgttagagagagtgttagaaagatagtgtccatagca 42780673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 52223532 - 52223463
Alignment:
Q  21 attggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattg 90  Q
    |||| |||||||| ||||||||||||||||||| |||| ||||  |||||||||| || |||| ||||||    
T  52223532 attgacttaaatcgtggtgggtctcacactttggaaatgggttatacttaaagtggtgtgtcacacattg 52223463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 8475271 - 8475199
Alignment:
Q  36 ggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagaga 108  Q
    |||||||||||||||||| |||| ||||||| |||||| | || | ||||||||  ||||||| |||||||||    
T  8475271 ggtgggtctcacactttggaaatgggttccatttaaagcggtgagacatacattagtttcatccaataagaga 8475199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 21175625 - 21175550
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgattt 94  Q
    |||||||||||||| ||||||||||||| |||||| |||| | || || | ||| || ||||||||||| ||||||    
T  21175625 ttattggcttaaattatggtgggtctcatactttgaaaatggatttcattcaaaatggtgggtcatacaatgattt 21175550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 17440202 - 17440296
Alignment:
Q  18 cttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatga 112  Q
    ||||||| ||| ||||||| ||||||| |||||||| ||||  ||| ||  ||||||||||||||||||| |  ||||| | ||||| |||||||    
T  17440202 cttattgactttaatcatgatgggtcttacactttgaaaatgagtttcatctaaagtgatgggtcatacaatagtttcacccaataaaagaatga 17440296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 18427196 - 18427281
Alignment:
Q  18 cttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataa 104  Q
    |||||||| ||||||||| |||||||| |||||||| ||||||   ||||  ||| || |||| ||||||||||||||||| |||||    
T  18427196 cttattggtttaaatcattgtgggtct-acactttgaaaatagaacccacacaaaatggtgggacatacattgatttcatccaataa 18427281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 5452157 - 5452222
Alignment:
Q  70 aaagtgatgggtcatacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaag 135  Q
    |||||| ||||  |||||||||||||||| ||||| ||| ||| ||  ||||||||||||||||||    
T  5452157 aaagtggtgggaaatacattgatttcatccaataaaagagtgaatgttaaagagagtgttgaaaag 5452222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 296970 - 296837
Alignment:
Q  19 ttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtgaca 118  Q
    ||||||| |||||| | |||||||||||||| ||| |||| |||||||||||| ||| |||| |||||| |  ||||||| ||||||||| ||||||  |    
T  296970 ttattggtttaaatgaaggtgggtctcacacattggaaatgggttccacttaaggtggtgggacatacactagtttcatccaataagagagtgagtgtta 296871  T
Q  119 aagagagtgttgaaaagatagtgtccttagcatt 152  Q
     ||||||||||||||||| ||||||| |||||||    
T  296870 gagagagtgttgaaaagaaagtgtccctagcatt 296837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0370 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0370
Description:

Target: scaffold0370; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 464
Target Start/End: Original strand, 11209 - 11249
Alignment:
Q  424 aaaaaatgttggccttttatacactccaaaagctgaaaatt 464  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  11209 aaaaaatcttggccttttatacactccaaaagctgaaaatt 11249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0370; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 464
Target Start/End: Original strand, 16499 - 16539
Alignment:
Q  424 aaaaaatgttggccttttatacactccaaaagctgaaaatt 464  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  16499 aaaaaatcttggccttttatacactccaaaagctgaaaatt 16539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 28431 - 28334
Alignment:
Q  18 cttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtg 115  Q
    |||||||| | ||||||  ||||||| ||||||||| |||| ||| |||| |||| ||||||| |  |||||||||||||| ||||||| | ||||||    
T  28431 cttattgggtgaaatcaatgtgggtcccacactttgaaaatgggtcccacataaattgatgggacccacattgatttcatccaataagaaagtgagtg 28334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 35683 - 35632
Alignment:
Q  64 ccacttaaagtgatgggtcatacattgatttcatctaataagagaatgagtg 115  Q
    |||| |||| ||||||| ||||||||||||||||| ||||||||| ||||||    
T  35683 ccacataaaatgatgggacatacattgatttcatcaaataagagagtgagtg 35632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 27946 - 27861
Alignment:
Q  18 cttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataa 104  Q
    |||||||| ||||||||| |||||||| |||||||| ||||||   ||||  |||||| |||| |||||||||||| |||| |||||    
T  27946 cttattggtttaaatcattgtgggtct-acactttggaaatagaacccacacaaagtggtgggacatacattgattccatccaataa 27861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 3371 - 3286
Alignment:
Q  27 ttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatgggtcatacattgatttcatctaataagagaatga 112  Q
    ||||||||| |||||||| |||||||| |||| | | ||| ||||||||  | ||||||||||| ||||||| ||| | |||||||    
T  3371 ttaaatcattgtgggtcttacactttgaaaatggataccatttaaagtggagagtcatacattggtttcatccaattaaagaatga 3286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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