View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20522_high_7 (Length: 418)
Name: NF20522_high_7
Description: NF20522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20522_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 23 - 407
Target Start/End: Complemental strand, 32729163 - 32728779
Alignment:
| Q |
23 |
gtgccaacaccaaacgtttcggtggtggacctcgttgttcaagtctcaaagaagacatttgctgaagaagtgaatgaggctttcagagacagtgcagcca |
122 |
Q |
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| T |
32729163 |
gtgccaacaccaaatgtttcggtggtggacctcgttgttcaagtctcaaagaagacatttgctgaagaagtgaatgaggctttcagagacagtgcagcca |
32729064 |
T |
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| Q |
123 |
aggagctgagtggtattctctcagtttgtgatgagccacttgtgtctgtagattttaggtgcactgatgtgtcctcaaccgtggattcgtcattgacaat |
222 |
Q |
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| T |
32729063 |
aggagctgagtggtattctctcagtttgtgatgagccacttgtgtctgtagattttaggtgcactgatgtgtcctcaaccgtcgattcgtcattgacaat |
32728964 |
T |
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| Q |
223 |
ggttatgggagatgacatggttaaggtgattgcttggtatgataatgaatggggttactcacaaagggttgttgatttggctgacattgttgccaataac |
322 |
Q |
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| T |
32728963 |
ggttatgggagatgacatggttaaggtgattgcttggtatgataatgaatggggttactcacaaagggttgttgatttggctgacattgttgccaataac |
32728864 |
T |
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| Q |
323 |
tggaagtgagagccaaataatatttgctaattatatatatgtatgtaccatgtgccattgtaattttgtacacttcttgcttcat |
407 |
Q |
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| T |
32728863 |
tggaagtgagagccgaataatatttgctaattatatatatgtatgtaccatgtgccattgtaattttgtacacttcttgcttcat |
32728779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 149 - 280
Target Start/End: Complemental strand, 54181295 - 54181164
Alignment:
| Q |
149 |
tgtgatgagccacttgtgtctgtagattttaggtgcactgatgtgtcctcaaccgtggattcgtcattgacaatggttatgggagatgacatggttaagg |
248 |
Q |
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| T |
54181295 |
tgtgatgttccacttgtgtctgttgacttccgctgcaccgatgtttcttcaactattgactcttccttgactatggtcatgggagatgatatggtcaagg |
54181196 |
T |
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| Q |
249 |
tgattgcttggtatgataatgaatggggttac |
280 |
Q |
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| T |
54181195 |
tggttgcttggtatgacaatgaatggggttac |
54181164 |
T |
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