View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20522_high_8 (Length: 333)
Name: NF20522_high_8
Description: NF20522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20522_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 26 - 312
Target Start/End: Original strand, 3436834 - 3437120
Alignment:
| Q |
26 |
cattttgacagctccagtgagaaggtgaaaaaagtaacggtagtataagatgaaggattatccctttattttgggcttgggatatatatgatgaaaaaat |
125 |
Q |
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|||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3436834 |
cattttgacagctctaatgagaaggtgaaaaaagtaacggcagtataagatgaaggattatccctttattttgggcttgggatatatatgatgaaaaaat |
3436933 |
T |
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| Q |
126 |
ataaaataataatagattatacacgtgtcaagcaacgactggatgtacgtatattggttcgaaaccacacaccaaaacataaaaacggttgaaattccct |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3436934 |
ataaaataataatagattatacacgtgtcaagcaacgactggatgtacgtatattggttcgaaaccacacaccaaaacataaaaacggttgaaattccct |
3437033 |
T |
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| Q |
226 |
ccaaaaggcgtacattagctacctacgccacgcaagaaaaatctccgattatggctacaacaccgtcgccgccgtcaatgttgccgt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3437034 |
ccaaaaggcgtacattagctacctacgccacgcaagaaaaatctccgattatggctacaacaccgtcgccgccgtcaatgttgccgt |
3437120 |
T |
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