View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20522_high_9 (Length: 316)
Name: NF20522_high_9
Description: NF20522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20522_high_9 |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 38 - 304
Target Start/End: Complemental strand, 32635393 - 32635127
Alignment:
| Q |
38 |
aaggaaatattgtctgggatttcagacaagaaaggaacatttgtaccaaataatatcaagtgttttacattcacgaaagcaggagtaggaagtactttat |
137 |
Q |
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| T |
32635393 |
aaggaaatgttgtctgggatttcagacaagaaaggaacatcattaccaaataatattaagtgttttacactcaggaaagcaggactaggaagtattttat |
32635294 |
T |
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| Q |
138 |
gtaaggtgatggaagagtcacgttcacctttcagtgaattcgcaagccaaatacaattggcaaagttttcaggaagatccacaagactatcactgacggg |
237 |
Q |
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| T |
32635293 |
gtaagatgatggaagagtcacgttcacctttcagtgaattcgcaagccagatacaattggcaaagttttcaggaagatccacaagactatcactgatagg |
32635194 |
T |
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| Q |
238 |
agataaaaaatattcaagattttttgtatgcaatattgatgatggaaatttattcgcacccaactca |
304 |
Q |
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| T |
32635193 |
agataaaaaatattcaagattttttgtatgcaatattgatgatggaaatttatttgcaccgaactca |
32635127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 284
Target Start/End: Original strand, 5605362 - 5605546
Alignment:
| Q |
100 |
ttttacattcacgaaagcaggagtaggaagtactttatgtaaggtgatggaagagtcacgttcacctttcagtgaattcgcaagccaaatacaattggca |
199 |
Q |
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| T |
5605362 |
ttttacactgacgaaggcaggactagaaagtactttatctaaggttatgaaagagtcatgttcactgttcagtggacttgaaagccaaatatcattgcaa |
5605461 |
T |
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| Q |
200 |
aagttttcaggaagatccacaagactatcactgacgggagataaaaaatattcaagattttttgtatgcaatattgatgatggaa |
284 |
Q |
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| T |
5605462 |
aagtttacaggaagatcaacaagacaatcactaataggaaagccaaagcctttaagattttgtgtatgcaatatagatgatggaa |
5605546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 284
Target Start/End: Complemental strand, 5630008 - 5629824
Alignment:
| Q |
100 |
ttttacattcacgaaagcaggagtaggaagtactttatgtaaggtgatggaagagtcacgttcacctttcagtgaattcgcaagccaaatacaattggca |
199 |
Q |
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| T |
5630008 |
ttttacactgacgaaggcaggactagaaagtactttatctaaggttatgaaagagtcatgttcactgttcagtggacttgaaagccaaatatcattgcaa |
5629909 |
T |
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| Q |
200 |
aagttttcaggaagatccacaagactatcactgacgggagataaaaaatattcaagattttttgtatgcaatattgatgatggaa |
284 |
Q |
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| T |
5629908 |
aagtttacaggaagatcaacaagacaatcactaataggaaagccaaagcctttaagattttgtgtatgcaatatagatgatggaa |
5629824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 284
Target Start/End: Complemental strand, 14406641 - 14406555
Alignment:
| Q |
198 |
caaagttttcaggaagatccacaagactatcactgacgggagataaaaaatattcaagattttttgtatgcaatattgatgatggaa |
284 |
Q |
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| T |
14406641 |
caaagttttcagtaagattcacaagacaatcactgattggaaagaaaaagtttccaagattttttgcatgcaataatgatgatggaa |
14406555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 284
Target Start/End: Complemental strand, 13167114 - 13167029
Alignment:
| Q |
199 |
aaagttttcaggaagatccacaagactatcactgacgggagataaaaaatattcaagattttttgtatgcaatattgatgatggaa |
284 |
Q |
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| T |
13167114 |
aaagttttcaggaagatccacaagacaatcactgataggaaagactaaccttgtaagattttttttatgcaatattgatgatggaa |
13167029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 6308451 - 6308488
Alignment:
| Q |
196 |
ggcaaagttttcaggaagatccacaagactatcactga |
233 |
Q |
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| T |
6308451 |
ggcaaagttttctggaagatccacaagacaatcactga |
6308488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 5553370 - 5553338
Alignment:
| Q |
199 |
aaagttttcaggaagatccacaagactatcact |
231 |
Q |
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| T |
5553370 |
aaagttttcaggaagatccacaagacaatcact |
5553338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 284
Target Start/End: Original strand, 12212 - 12298
Alignment:
| Q |
198 |
caaagttttcaggaagatccacaagactatcactgacgggagataaaaaatattcaagattttttgtatgcaatattgatgatggaa |
284 |
Q |
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|||||||||||| ||||| |||||||| |||||||| ||| | ||||| | | |||||||||||| |||||||| ||||||||||| |
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| T |
12212 |
caaagttttcagtaagattcacaagacaatcactgattggaaagaaaaagtttccaagattttttgcatgcaataatgatgatggaa |
12298 |
T |
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