View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20522_low_13 (Length: 284)

Name: NF20522_low_13
Description: NF20522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20522_low_13
NF20522_low_13
[»] chr8 (17 HSPs)
chr8 (1-162)||(32634099-32634260)
chr8 (1-163)||(5607146-5607308)
chr8 (1-163)||(5628062-5628224)
chr8 (1-158)||(6309582-6309739)
chr8 (9-163)||(5550629-5550783)
chr8 (1-163)||(13165713-13165875)
chr8 (6-163)||(14405554-14405711)
chr8 (155-264)||(32634989-32635098)
chr8 (159-265)||(5647212-5647318)
chr8 (203-257)||(14406404-14406458)
chr8 (157-254)||(6308590-6308687)
chr8 (199-263)||(13166872-13166936)
chr8 (213-257)||(5553137-5553181)
chr8 (155-251)||(5605592-5605688)
chr8 (155-251)||(5629682-5629778)
chr8 (33-159)||(12187731-12187857)
chr8 (33-159)||(12432159-12432285)
[»] scaffold0363 (2 HSPs)
scaffold0363 (6-163)||(13142-13299)
scaffold0363 (203-257)||(12395-12449)
[»] chr3 (1 HSPs)
chr3 (106-148)||(36002733-36002775)
[»] chr1 (1 HSPs)
chr1 (30-150)||(42265356-42265476)


Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 32634099 - 32634260
Alignment:
Q  1 taagagttgactttgaaagttgcgtacaaatacatgacttgatacaagaaatgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacg 100  Q
    |||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| | |||| |    
T  32634099 taagagttgactttgaaaattgcatacaaatgcatgacttgatacaagaaatgggcaaacaagtcgttcgtgaagaatctcttaagaatccagaacaaag 32634198  T
Q  101 cagtagattgtgggatcctaaggaagtttatgatgtattgaaaaataatagagtaagaaaat 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32634199 cagtagattgtgggatcctaaggaagtttatgatgtattgaaaaataatagagtaagaaaat 32634260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 5607308 - 5607146
Alignment:
Q  1 taagagttgactttgaaagttgcgtacaaatacatgacttgatacaagaaatgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacg 100  Q
    |||| ||||||| ||||| |||| ||||||| |||| ||||||||| |||||||| |||||| | |||| ||||||||| ||||||||||||||||||||    
T  5607308 taagggttgactctgaaaattgcatacaaatgcatggcttgatacaggaaatgggaaaacaaattgttcgtgaagaatcacttaagaatcccggacaacg 5607209  T
Q  101 cagtagattgtgggatcctaaggaagtttatgatgtattgaaaaataatagagtaagaaaatg 163  Q
    ||||||||| || |||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  5607208 cagtagattatgtgatcctgaggaagtttatgatgtattgaaaaataatagagtaagagaatg 5607146  T

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Target: chr8; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 5628062 - 5628224
Alignment:
Q  1 taagagttgactttgaaagttgcgtacaaatacatgacttgatacaagaaatgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacg 100  Q
    |||| ||||||| ||||| |||| ||||||| |||| ||||||||| |||||||| |||||| | |||| ||||||||| ||||||||||||||||||||    
T  5628062 taagggttgactctgaaaattgcatacaaatgcatggcttgatacaggaaatgggaaaacaaattgttcgtgaagaatcacttaagaatcccggacaacg 5628161  T
Q  101 cagtagattgtgggatcctaaggaagtttatgatgtattgaaaaataatagagtaagaaaatg 163  Q
    ||||||||| || |||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  5628162 cagtagattatgtgatcctgaggaagtttatgatgtattgaaaaataatagagtaagagaatg 5628224  T

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Target: chr8; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 6309739 - 6309582
Alignment:
Q  1 taagagttgactttgaaagttgcgtacaaatacatgacttgatacaagaaatgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacg 100  Q
    |||| ||||||||||||| |||| ||||||| |||||||||||||||||||  || |||||| | |||| ||||||||| ||||||||||||||||||||    
T  6309739 taagcgttgactttgaaaattgcatacaaatgcatgacttgatacaagaaacaggaaaacaaattgttcgtgaagaatcacttaagaatcccggacaacg 6309640  T
Q  101 cagtagattgtgggatcctaaggaagtttatgatgtattgaaaaataatagagtaaga 158  Q
    ||||||||| || |||||||||||||||| | ||||||||||||||||||||||||||    
T  6309639 cagtagattatgtgatcctaaggaagtttgtaatgtattgaaaaataatagagtaaga 6309582  T

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Target: chr8; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 5550629 - 5550783
Alignment:
Q  9 gactttgaaagttgcgtacaaatacatgacttgatacaagaaatgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacgcagtagat 108  Q
    |||| ||||| |||| ||||||| |||| ||||||||| |||||||| |||||| | |||| ||||||||| ||||||||||||||||||||||||||||    
T  5550629 gactctgaaaattgcatacaaatgcatggcttgatacaggaaatgggaaaacaaattgttcgtgaagaatcacttaagaatcccggacaacgcagtagat 5550728  T
Q  109 tgtgggatcctaaggaagtttatgatgtattgaaaaataatagagtaagaaaatg 163  Q
    | || |||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  5550729 tatgtgatcctgaggaagtttatgacgtattgaaaaataatagagtaagaaaatg 5550783  T

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Target: chr8; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 13165713 - 13165875
Alignment:
Q  1 taagagttgactttgaaagttgcgtacaaatacatgacttgatacaagaaatgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacg 100  Q
    |||||||||||| | ||| || | ||||||| |||||||||||||| |||||||| | |||| | |||| ||||||||||||||||||||| ||||||||    
T  13165713 taagagttgactataaaaatttcatacaaatgcatgacttgatacaggaaatgggaagacaaattgttcgtgaagaatctcttaagaatcctggacaacg 13165812  T
Q  101 cagtagattgtgggatcctaaggaagtttatgatgtattgaaaaataatagagtaagaaaatg 163  Q
    ||||||||| || |||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  13165813 cagtagattatgtgatcctaaggaagtttttgatgtattgaaaaataatagagtaagagaatg 13165875  T

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Target: chr8; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 6 - 163
Target Start/End: Original strand, 14405554 - 14405711
Alignment:
Q  6 gttgactttgaaagttgcgtacaaatacatgacttgatacaagaaatgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacgcagta 105  Q
    ||||||| | ||| |||| ||||||| || |||||||||||||||||||| |||||| | |||| ||||||||| | |||||||||||||||||||||||    
T  14405554 gttgactctaaaaattgcatacaaatgcacgacttgatacaagaaatgggaaaacaaattgttcgtgaagaatcacataagaatcccggacaacgcagta 14405653  T
Q  106 gattgtgggatcctaaggaagtttatgatgtattgaaaaataatagagtaagaaaatg 163  Q
    |||| || ||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  14405654 gattatgtgatcctaaggaagtttacgatgtattgaaaaataatagagtaagagaatg 14405711  T

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Target: chr8; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 155 - 264
Target Start/End: Complemental strand, 32635098 - 32634989
Alignment:
Q  155 aagaaaatgcgacttagaactcttggagattgatgcagtccatggcattcaattcacagagggctggtgaacaagtgttactagaaatgctcttaagcga 254  Q
    ||||||||| |||  |||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  32635098 aagaaaatgtgacggagaactcttggagattgatgcaattcatggcattcaattcacggagggctggtgaacaagtgttactggaaatgctcttaagcga 32634999  T
Q  255 cgtgcatcca 264  Q
      ||||||||    
T  32634998 tatgcatcca 32634989  T

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Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 5647318 - 5647212
Alignment:
Q  159 aaatgcgacttagaactcttggagattgatgcagtccatggcattcaattcacagagggctggtgaacaagtgttactagaaatgctcttaagcgacgtg 258  Q
    ||||| |||| ||||||||| |||||||| ||| | ||| ||||||||| ||  ||||||||||||||||||||||||  ||| |||||||||| | ||     
T  5647318 aaatgggactgagaactctttgagattgaagcaattcatagcattcaatacatggagggctggtgaacaagtgttactgaaaaggctcttaagcaatgta 5647219  T
Q  259 catccag 265  Q
    |||||||    
T  5647218 catccag 5647212  T

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Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 14406458 - 14406404
Alignment:
Q  203 tcaattcacagagggctggtgaacaagtgttactagaaatgctcttaagcgacgt 257  Q
    |||||| || |||||||||||||||||||||||| ||||||||||||||||||||    
T  14406458 tcaattgacggagggctggtgaacaagtgttactggaaatgctcttaagcgacgt 14406404  T

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Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 157 - 254
Target Start/End: Original strand, 6308590 - 6308687
Alignment:
Q  157 gaaaatgcgacttagaactcttggagattgatgcagtccatggcattcaattcacagagggctggtgaacaagtgttactagaaatgctcttaagcga 254  Q
    ||||||| |||| ||||||||| |||||||||||| ||| | || | |||||  | ||| |||||||||||||||||||| |||| ||||||||||||    
T  6308590 gaaaatgtgactgagaactctttgagattgatgcaatccctagcttccaatttccggagcgctggtgaacaagtgttactcgaaaggctcttaagcga 6308687  T

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Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 13166936 - 13166872
Alignment:
Q  199 gcattcaattcacagagggctggtgaacaagtgttactagaaatgctcttaagcgacgtgcatcc 263  Q
    ||||||||||||| || |||||| |||||||||||||| |||| ||||||||||||||| |||||    
T  13166936 gcattcaattcacggaaggctggagaacaagtgttactggaaaggctcttaagcgacgtacatcc 13166872  T

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Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 5553181 - 5553137
Alignment:
Q  213 gagggctggtgaacaagtgttactagaaatgctcttaagcgacgt 257  Q
    |||||||||||||||||||||||| |||| |||||||||||||||    
T  5553181 gagggctggtgaacaagtgttactggaaaggctcttaagcgacgt 5553137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 251
Target Start/End: Original strand, 5605592 - 5605688
Alignment:
Q  155 aagaaaatgcgacttagaactcttggagattgatgcagtccatggcattcaattcacagagggctggtgaacaagtgttactagaaatgctcttaag 251  Q
    ||||||||| || | |||||||||  ||||||||||| |||||  |||||||   |  |||||||||||||||||||||||| |||| |||||||||    
T  5605592 aagaaaatgggattgagaactctttaagattgatgcaatccataacattcaaaaaattgagggctggtgaacaagtgttactggaaaggctcttaag 5605688  T

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Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 251
Target Start/End: Complemental strand, 5629778 - 5629682
Alignment:
Q  155 aagaaaatgcgacttagaactcttggagattgatgcagtccatggcattcaattcacagagggctggtgaacaagtgttactagaaatgctcttaag 251  Q
    ||||||||| || | |||||||||  ||||||||||| |||||  |||||||   |  |||||||||||||||||||||||| |||| |||||||||    
T  5629778 aagaaaatgggattgagaactctttaagattgatgcaatccataacattcaaaaaattgagggctggtgaacaagtgttactggaaaggctcttaag 5629682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 159
Target Start/End: Complemental strand, 12187857 - 12187731
Alignment:
Q  33 catgacttgatacaagaaatgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacgcagtagattgtgggatcctaaggaagtttatg 132  Q
    ||||||||| ||||||||||||| |  ||| | |||| |||||||||| | || || || ||||||||||||||||||||| || |||  ||| ||| ||    
T  12187857 catgacttgttacaagaaatgggtaggcaaattgttcgtgaagaatctatcaaaaaccctggacaacgcagtagattgtggaatgctagtgaaatttgtg 12187758  T
Q  133 atgtattgaaaaataatagagtaagaa 159  Q
    |||| |||| ||| ||||  |||||||    
T  12187757 atgtgttgacaaacaataatgtaagaa 12187731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 159
Target Start/End: Complemental strand, 12432285 - 12432159
Alignment:
Q  33 catgacttgatacaagaaatgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacgcagtagattgtgggatcctaaggaagtttatg 132  Q
    ||||||||| ||||||||||||| |  ||| | |||| |||||||||| | || || || ||||||||||||||||||||| || |||  ||| ||| ||    
T  12432285 catgacttgttacaagaaatgggtaggcaaattgttcgtgaagaatctatcaaaaaccctggacaacgcagtagattgtggaatgctagtgaaatttgtg 12432186  T
Q  133 atgtattgaaaaataatagagtaagaa 159  Q
    |||| |||| ||| ||||  |||||||    
T  12432185 atgtgttgacaaacaataatgtaagaa 12432159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 6 - 163
Target Start/End: Complemental strand, 13299 - 13142
Alignment:
Q  6 gttgactttgaaagttgcgtacaaatacatgacttgatacaagaaatgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacgcagta 105  Q
    ||||||| | ||| |||| ||||||| || |||||||||||||||||||| |||||| | |||| ||||||||| | |||||||||||||||||||||||    
T  13299 gttgactctaaaaattgcatacaaatgcacgacttgatacaagaaatgggaaaacaaattgttcgtgaagaatcacataagaatcccggacaacgcagta 13200  T
Q  106 gattgtgggatcctaaggaagtttatgatgtattgaaaaataatagagtaagaaaatg 163  Q
    |||| || ||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  13199 gattatgtgatcctaaggaagtttacgatgtattgaaaaataatagagtaagagaatg 13142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 12395 - 12449
Alignment:
Q  203 tcaattcacagagggctggtgaacaagtgttactagaaatgctcttaagcgacgt 257  Q
    |||||| || |||||||||||||||||||||||| ||||||||||||||||||||    
T  12395 tcaattgacggagggctggtgaacaagtgttactggaaatgctcttaagcgacgt 12449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 36002775 - 36002733
Alignment:
Q  106 gattgtgggatcctaaggaagtttatgatgtattgaaaaataa 148  Q
    |||||||||||||||||||||| |||||| |||||||| ||||    
T  36002775 gattgtgggatcctaaggaagtgtatgatttattgaaatataa 36002733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 42265476 - 42265356
Alignment:
Q  30 atacatgacttgatacaagaaatgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacgcagtagattgtgggatcctaaggaagttt 129  Q
    |||||||||||||||||||||||||  |  ||| | ||||  ||||||||| | || || || ||| ||||||||||||||||| || |||  ||| |||    
T  42265476 atacatgacttgatacaagaaatggataggcaaattgttcgggaagaatctatcaaaaaccctggaaaacgcagtagattgtggaatgctagcgaaattt 42265377  T
Q  130 atgatgtattgaaaaataata 150  Q
     |||||| |||| ||| ||||    
T  42265376 gtgatgtgttgacaaacaata 42265356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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