View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20522_low_22 (Length: 218)

Name: NF20522_low_22
Description: NF20522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20522_low_22
NF20522_low_22
[»] chr8 (16 HSPs)
chr8 (19-200)||(32633599-32633794)
chr8 (93-200)||(13165213-13165320)
chr8 (93-200)||(14405049-14405156)
chr8 (93-185)||(5571719-5571811)
chr8 (71-200)||(12176942-12177071)
chr8 (71-200)||(12421370-12421499)
chr8 (93-200)||(6310132-6310239)
chr8 (19-200)||(5607613-5607808)
chr8 (19-63)||(5627713-5627757)
chr8 (113-200)||(5550121-5550208)
chr8 (113-200)||(5627562-5627649)
chr8 (19-63)||(5550272-5550316)
chr8 (19-63)||(14405200-14405244)
chr8 (71-200)||(9394108-9394237)
chr8 (19-63)||(6310044-6310088)
chr8 (19-63)||(13165364-13165408)
[»] scaffold0363 (2 HSPs)
scaffold0363 (93-200)||(13697-13804)
scaffold0363 (19-63)||(13609-13653)
[»] chr2 (1 HSPs)
chr2 (113-185)||(19492705-19492777)


Alignment Details
Target: chr8 (Bit Score: 141; Significance: 4e-74; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 32633794 - 32633599
Alignment:
Q  19 tgagagctccacatatccctccttaggtaagactttgtcaaaagctttgaag--------------ggagtttcgagagttcatttctttaacttgatga 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||              ||||||||||||||||||||||||||||||||||    
T  32633794 tgagagctccacatatccctccttaggtaagactttgtcaaaagcattgaagctgaaaagctggagggagtttcgagagttcatttctttaacttgatga 32633695  T
Q  105 attttgtcaattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctaccatctcctagccaaccattccccactccaatc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32633694 attttgtcaattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctaccatctcctagccaaccattcccgactccaatc 32633599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 93 - 200
Target Start/End: Complemental strand, 13165320 - 13165213
Alignment:
Q  93 ttaacttgatgaattttgtcaattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctaccatctcctagccaaccattcccca 192  Q
    ||||||| || |||||  |||||||||||||| | |||||||||||||||||| ||||| ||||||||| |||||||| |||||| ||||||||  ||||    
T  13165320 ttaacttcataaatttcttcaattcctccacttatcagcacatgcttatccctagtcgtcacaatgactgtgctaccagctcctaaccaaccatgtccca 13165221  T
Q  193 ctccaatc 200  Q
    ||||||||    
T  13165220 ctccaatc 13165213  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 93 - 200
Target Start/End: Complemental strand, 14405156 - 14405049
Alignment:
Q  93 ttaacttgatgaattttgtcaattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctaccatctcctagccaaccattcccca 192  Q
    ||||||| || ||||||||| ||||||||||| | |||||||||||||||||| || || || |||||| ||||||||  ||||||||||||||  ||||    
T  14405156 ttaacttcataaattttgtcgattcctccacttatcagcacatgcttatccctcgtagtcacgatgactgtgctaccagatcctagccaaccatgtccca 14405057  T
Q  193 ctccaatc 200  Q
    ||||||||    
T  14405056 ctccaatc 14405049  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 93 - 185
Target Start/End: Complemental strand, 5571811 - 5571719
Alignment:
Q  93 ttaacttgatgaattttgtcaattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctaccatctcctagccaacca 185  Q
    ||||||| || ||||| ||||||||||||||| | ||||||||| |||||||| ||||| ||||||||||||||||||  ||| |||||||||    
T  5571811 ttaacttcataaatttcgtcaattcctccacttatcagcacatgtttatccctagtcgtcacaatgactatgctaccaggtccaagccaacca 5571719  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 200
Target Start/End: Original strand, 12176942 - 12177071
Alignment:
Q  71 ggagtttcgagagttcatttctttaacttgatgaattttgtcaattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctacca 170  Q
    ||||||| ||||||||||||| |||||||||||||||| |||||||||||| |    || |||||||||||| || || || ||||||||| ||||||||    
T  12176942 ggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctcctcctgtcaacacatgcttatctctggttgtcacaatgactctgctacca 12177041  T
Q  171 tctcctagccaaccattccccactccaatc 200  Q
     |||| || ||| ||| |||  ||||||||    
T  12177042 actccaaggcaatcatgccctgctccaatc 12177071  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 200
Target Start/End: Original strand, 12421370 - 12421499
Alignment:
Q  71 ggagtttcgagagttcatttctttaacttgatgaattttgtcaattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctacca 170  Q
    ||||||| ||||||||||||| |||||||||||||||| |||||||||||| |    || |||||||||||| || || || ||||||||| ||||||||    
T  12421370 ggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctcctcctgtcaacacatgcttatctctggttgtcacaatgactctgctacca 12421469  T
Q  171 tctcctagccaaccattccccactccaatc 200  Q
     |||| || ||| ||| |||  ||||||||    
T  12421470 actccaaggcaatcatgccctgctccaatc 12421499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 93 - 200
Target Start/End: Original strand, 6310132 - 6310239
Alignment:
Q  93 ttaacttgatgaattttgtcaattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctaccatctcctagccaaccattcccca 192  Q
    ||||||| || |||||| ||||| |||||||| | ||  |||||||||||||| ||||| ||||||||| ||||||||  ||||||||||||||  || |    
T  6310132 ttaacttcataaattttttcaatccctccacttatcaagacatgcttatccctagtcgtcacaatgactgtgctaccagatcctagccaaccatgtccta 6310231  T
Q  193 ctccaatc 200  Q
    ||||||||    
T  6310232 ctccaatc 6310239  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 5607613 - 5607808
Alignment:
Q  19 tgagagctccacatatccctccttaggtaagactttgtcaaaagctttgaag--------------ggagtttcgagagttcatttctttaacttgatga 104  Q
    |||||||||||||||||| ||||||||| |||||||||||||||| || |||              ||| ||||| |||||||| |  ||||||| ||      
T  5607613 tgagagctccacatatccatccttaggtgagactttgtcaaaagcattcaagctaaaaattctgagggaatttcgggagttcatcttcttaacttcatat 5607712  T
Q  105 attttgtcaattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctaccatctcctagccaaccattccccactccaatc 200  Q
    ||| | | |||||||||||| | ||||||||| |||||||| || || ||||||||| | ||||||  ||||||||||||||  || |||||||||    
T  5607713 attgtcttaattcctccacttatcagcacatgtttatccctagtagtcacaatgactgtactaccagatcctagccaaccatgtcctactccaatc 5607808  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 5627757 - 5627713
Alignment:
Q  19 tgagagctccacatatccctccttaggtaagactttgtcaaaagc 63  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||    
T  5627757 tgagagctccacatatccatccttaggtgagactttgtcaaaagc 5627713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 5550208 - 5550121
Alignment:
Q  113 aattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctaccatctcctagccaaccattccccactccaatc 200  Q
    |||||||||||| | ||||||||| |||||||| || || ||||||||| | ||||||  ||||||||||||||  || |||||||||    
T  5550208 aattcctccacttatcagcacatgtttatccctagtagtcacaatgactgtactaccagatcctagccaaccatgtcctactccaatc 5550121  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 5627649 - 5627562
Alignment:
Q  113 aattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctaccatctcctagccaaccattccccactccaatc 200  Q
    |||||||||||| | ||||||||| |||||||| || || ||||||||| | ||||||  ||||||||||||||  || |||||||||    
T  5627649 aattcctccacttatcagcacatgtttatccctagtagtcacaatgactgtactaccagatcctagccaaccatgtcctactccaatc 5627562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 5550316 - 5550272
Alignment:
Q  19 tgagagctccacatatccctccttaggtaagactttgtcaaaagc 63  Q
    |||||||||||||||||| ||||||||| ||||||||| ||||||    
T  5550316 tgagagctccacatatccatccttaggtgagactttgttaaaagc 5550272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 14405244 - 14405200
Alignment:
Q  19 tgagagctccacatatccctccttaggtaagactttgtcaaaagc 63  Q
    |||||||||||||||||| ||||||||  ||||||||||||||||    
T  14405244 tgagagctccacatatccatccttaggcgagactttgtcaaaagc 14405200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 200
Target Start/End: Original strand, 9394108 - 9394237
Alignment:
Q  71 ggagtttcgagagttcatttctttaacttgatgaattttgtcaattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctacca 170  Q
    ||||||| || |||||||||| ||||||||| |||||| |||||| ||||  |  | || |||||||||||| || || || |||||  || ||||||||    
T  9394108 ggagttttgaaagttcatttccttaacttgaagaatttcgtcaatccctctgcctatcaacacatgcttatctctggttgtcacaatttctctgctacca 9394207  T
Q  171 tctcctagccaaccattccccactccaatc 200  Q
     |||| || ||| ||| ||| |||||||||    
T  9394208 gctccaaggcaatcatgccctactccaatc 9394237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 6310044 - 6310088
Alignment:
Q  19 tgagagctccacatatccctccttaggtaagactttgtcaaaagc 63  Q
    |||||||||||||||||| ||||||||| |||||||  |||||||    
T  6310044 tgagagctccacatatccatccttaggtgagacttttccaaaagc 6310088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 13165408 - 13165364
Alignment:
Q  19 tgagagctccacatatccctccttaggtaagactttgtcaaaagc 63  Q
    ||||||||||||| ||||||||||||| |||||  ||||||||||    
T  13165408 tgagagctccacaaatccctccttagggaagacagtgtcaaaagc 13165364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 93 - 200
Target Start/End: Original strand, 13697 - 13804
Alignment:
Q  93 ttaacttgatgaattttgtcaattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctaccatctcctagccaaccattcccca 192  Q
    ||||||| || ||||||||| ||||||||||| | |||||||||||||||||| || || || |||||| ||||||||  ||||||||||||||  ||||    
T  13697 ttaacttcataaattttgtcgattcctccacttatcagcacatgcttatccctcgtagtcacgatgactgtgctaccagatcctagccaaccatgtccca 13796  T
Q  193 ctccaatc 200  Q
    ||||||||    
T  13797 ctccaatc 13804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 13609 - 13653
Alignment:
Q  19 tgagagctccacatatccctccttaggtaagactttgtcaaaagc 63  Q
    |||||||||||||||||| ||||||||  ||||||||||||||||    
T  13609 tgagagctccacatatccatccttaggcgagactttgtcaaaagc 13653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 19492705 - 19492777
Alignment:
Q  113 aattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctaccatctcctagccaacca 185  Q
    ||||||||||||   |||||||| || |||||| || || |||||||||||||||||| ||||||||||||||    
T  19492705 aattcctccacttttcagcacatcctcatccctagtagtcacaatgactatgctaccagctcctagccaacca 19492777  T

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