View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20522_low_4 (Length: 462)

Name: NF20522_low_4
Description: NF20522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20522_low_4
NF20522_low_4
[»] chr8 (12 HSPs)
chr8 (38-442)||(32634989-32635393)
chr8 (325-443)||(5647212-5647330)
chr8 (100-429)||(5605362-5605688)
chr8 (100-429)||(5629682-5630008)
chr8 (325-432)||(6308580-6308687)
chr8 (381-435)||(14406404-14406458)
chr8 (377-441)||(13166872-13166936)
chr8 (198-284)||(14406555-14406641)
chr8 (391-435)||(5553137-5553181)
chr8 (199-292)||(13167021-13167114)
chr8 (196-233)||(6308451-6308488)
chr8 (199-231)||(5553338-5553370)
[»] scaffold0363 (2 HSPs)
scaffold0363 (381-435)||(12395-12449)
scaffold0363 (198-284)||(12212-12298)


Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 38 - 442
Target Start/End: Complemental strand, 32635393 - 32634989
Alignment:
Q  38 aaggaaatattgtctgggatttcagacaagaaaggaacatttgtaccaaataatatcaagtgttttacattcacgaaagcaggagtaggaagtactttat 137  Q
    |||||||| |||||||||||||||||||||||||||||||   ||||||||||||| |||||||||||| ||| |||||||||| ||||||||| |||||    
T  32635393 aaggaaatgttgtctgggatttcagacaagaaaggaacatcattaccaaataatattaagtgttttacactcaggaaagcaggactaggaagtattttat 32635294  T
Q  138 gtaaggtgatggaagagtcacgttcacctttcagtgaattcgcaagccaaatacaattggcaaagttttcaggaagatccacaagactatcactgacggg 237  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  32635293 gtaagatgatggaagagtcacgttcacctttcagtgaattcgcaagccagatacaattggcaaagttttcaggaagatccacaagactatcactgatagg 32635194  T
Q  238 agataaaaaatattcaagattttttgtatgcaatattgatgatggaaatttattcgcacccaactcaggcaaactcnnnnnnnnnttatcaactgaagaa 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||         |||||||||||||||    
T  32635193 agataaaaaatattcaagattttttgtatgcaatattgatgatggaaatttatttgcaccgaactcaggcaaactcaaaaacaaattatcaactgaagaa 32635094  T
Q  338 aatgcgacttagaactcttggagattgatgcagtccatggcattcaattcacagagggctggtgaacaagtgttactagaaatgctcttaagcgacgtgc 437  Q
    |||| |||  |||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||  |||    
T  32635093 aatgtgacggagaactcttggagattgatgcaattcatggcattcaattcacggagggctggtgaacaagtgttactggaaatgctcttaagcgatatgc 32634994  T
Q  438 atcca 442  Q
    |||||    
T  32634993 atcca 32634989  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 325 - 443
Target Start/End: Complemental strand, 5647330 - 5647212
Alignment:
Q  325 atcaactgaagaaaatgcgacttagaactcttggagattgatgcagtccatggcattcaattcacagagggctggtgaacaagtgttactagaaatgctc 424  Q
    ||||||||||| ||||| |||| ||||||||| |||||||| ||| | ||| ||||||||| ||  ||||||||||||||||||||||||  ||| ||||    
T  5647330 atcaactgaagcaaatgggactgagaactctttgagattgaagcaattcatagcattcaatacatggagggctggtgaacaagtgttactgaaaaggctc 5647231  T
Q  425 ttaagcgacgtgcatccag 443  Q
    |||||| | || |||||||    
T  5647230 ttaagcaatgtacatccag 5647212  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 100 - 429
Target Start/End: Original strand, 5605362 - 5605688
Alignment:
Q  100 ttttacattcacgaaagcaggagtaggaagtactttatgtaaggtgatggaagagtcacgttcacctttcagtgaattcgcaagccaaatacaattggca 199  Q
    ||||||| | ||||| |||||| ||| ||||||||||| |||||| ||| |||||||| ||||||  ||||||| | | | ||||||||||  ||||  |    
T  5605362 ttttacactgacgaaggcaggactagaaagtactttatctaaggttatgaaagagtcatgttcactgttcagtggacttgaaagccaaatatcattgcaa 5605461  T
Q  200 aagttttcaggaagatccacaagactatcactgacgggagataaaaaatattcaagattttttgtatgcaatattgatgatggaaatttattcgcaccca 299  Q
    |||||| |||||||||| ||||||| |||||| |  ||| |   |||   || |||||||| |||||||||||| |||||||||| || |||| || ||     
T  5605462 aagtttacaggaagatcaacaagacaatcactaataggaaagccaaagcctttaagattttgtgtatgcaatatagatgatggaagttcattcccatccc 5605561  T
Q  300 actcaggcaaactcnnnnnnnnnttatcaactgaagaaaatgcgacttagaactcttggagattgatgcagtccatggcattcaattcacagagggctgg 399  Q
    |||| |  |||  |           |||||| |||||||||| || | |||||||||  ||||||||||| |||||  |||||||   |  |||||||||    
T  5605562 actctgtaaaatacaaactcaa---atcaacggaagaaaatgggattgagaactctttaagattgatgcaatccataacattcaaaaaattgagggctgg 5605658  T
Q  400 tgaacaagtgttactagaaatgctcttaag 429  Q
    ||||||||||||||| |||| |||||||||    
T  5605659 tgaacaagtgttactggaaaggctcttaag 5605688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 100 - 429
Target Start/End: Complemental strand, 5630008 - 5629682
Alignment:
Q  100 ttttacattcacgaaagcaggagtaggaagtactttatgtaaggtgatggaagagtcacgttcacctttcagtgaattcgcaagccaaatacaattggca 199  Q
    ||||||| | ||||| |||||| ||| ||||||||||| |||||| ||| |||||||| ||||||  ||||||| | | | ||||||||||  ||||  |    
T  5630008 ttttacactgacgaaggcaggactagaaagtactttatctaaggttatgaaagagtcatgttcactgttcagtggacttgaaagccaaatatcattgcaa 5629909  T
Q  200 aagttttcaggaagatccacaagactatcactgacgggagataaaaaatattcaagattttttgtatgcaatattgatgatggaaatttattcgcaccca 299  Q
    |||||| |||||||||| ||||||| |||||| |  ||| |   |||   || |||||||| |||||||||||| |||||||||| || |||| || ||     
T  5629908 aagtttacaggaagatcaacaagacaatcactaataggaaagccaaagcctttaagattttgtgtatgcaatatagatgatggaagttcattcccatccc 5629809  T
Q  300 actcaggcaaactcnnnnnnnnnttatcaactgaagaaaatgcgacttagaactcttggagattgatgcagtccatggcattcaattcacagagggctgg 399  Q
    |||| |  |||  |           |||||| |||||||||| || | |||||||||  ||||||||||| |||||  |||||||   |  |||||||||    
T  5629808 actctgtaaaatacaaactcaa---atcaacggaagaaaatgggattgagaactctttaagattgatgcaatccataacattcaaaaaattgagggctgg 5629712  T
Q  400 tgaacaagtgttactagaaatgctcttaag 429  Q
    ||||||||||||||| |||| |||||||||    
T  5629711 tgaacaagtgttactggaaaggctcttaag 5629682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 325 - 432
Target Start/End: Original strand, 6308580 - 6308687
Alignment:
Q  325 atcaactgaagaaaatgcgacttagaactcttggagattgatgcagtccatggcattcaattcacagagggctggtgaacaagtgttactagaaatgctc 424  Q
    |||||| || ||||||| |||| ||||||||| |||||||||||| ||| | || | |||||  | ||| |||||||||||||||||||| |||| ||||    
T  6308580 atcaacggatgaaaatgtgactgagaactctttgagattgatgcaatccctagcttccaatttccggagcgctggtgaacaagtgttactcgaaaggctc 6308679  T
Q  425 ttaagcga 432  Q
    ||||||||    
T  6308680 ttaagcga 6308687  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 435
Target Start/End: Complemental strand, 14406458 - 14406404
Alignment:
Q  381 tcaattcacagagggctggtgaacaagtgttactagaaatgctcttaagcgacgt 435  Q
    |||||| || |||||||||||||||||||||||| ||||||||||||||||||||    
T  14406458 tcaattgacggagggctggtgaacaagtgttactggaaatgctcttaagcgacgt 14406404  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 377 - 441
Target Start/End: Complemental strand, 13166936 - 13166872
Alignment:
Q  377 gcattcaattcacagagggctggtgaacaagtgttactagaaatgctcttaagcgacgtgcatcc 441  Q
    ||||||||||||| || |||||| |||||||||||||| |||| ||||||||||||||| |||||    
T  13166936 gcattcaattcacggaaggctggagaacaagtgttactggaaaggctcttaagcgacgtacatcc 13166872  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 198 - 284
Target Start/End: Complemental strand, 14406641 - 14406555
Alignment:
Q  198 caaagttttcaggaagatccacaagactatcactgacgggagataaaaaatattcaagattttttgtatgcaatattgatgatggaa 284  Q
    |||||||||||| ||||| |||||||| ||||||||  ||| | ||||| | | |||||||||||| |||||||| |||||||||||    
T  14406641 caaagttttcagtaagattcacaagacaatcactgattggaaagaaaaagtttccaagattttttgcatgcaataatgatgatggaa 14406555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 435
Target Start/End: Complemental strand, 5553181 - 5553137
Alignment:
Q  391 gagggctggtgaacaagtgttactagaaatgctcttaagcgacgt 435  Q
    |||||||||||||||||||||||| |||| |||||||||||||||    
T  5553181 gagggctggtgaacaagtgttactggaaaggctcttaagcgacgt 5553137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 199 - 292
Target Start/End: Complemental strand, 13167114 - 13167021
Alignment:
Q  199 aaagttttcaggaagatccacaagactatcactgacgggagataaaaaatattcaagattttttgtatgcaatattgatgatggaaatttattc 292  Q
    |||||||||||||||||||||||||| ||||||||  ||| | |  ||   |  |||||||||| ||||||||||||||||||||| || ||||    
T  13167114 aaagttttcaggaagatccacaagacaatcactgataggaaagactaaccttgtaagattttttttatgcaatattgatgatggaagttcattc 13167021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 6308451 - 6308488
Alignment:
Q  196 ggcaaagttttcaggaagatccacaagactatcactga 233  Q
    |||||||||||| |||||||||||||||| ||||||||    
T  6308451 ggcaaagttttctggaagatccacaagacaatcactga 6308488  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 5553370 - 5553338
Alignment:
Q  199 aaagttttcaggaagatccacaagactatcact 231  Q
    |||||||||||||||||||||||||| ||||||    
T  5553370 aaagttttcaggaagatccacaagacaatcact 5553338  T

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Target: scaffold0363 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 435
Target Start/End: Original strand, 12395 - 12449
Alignment:
Q  381 tcaattcacagagggctggtgaacaagtgttactagaaatgctcttaagcgacgt 435  Q
    |||||| || |||||||||||||||||||||||| ||||||||||||||||||||    
T  12395 tcaattgacggagggctggtgaacaagtgttactggaaatgctcttaagcgacgt 12449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 198 - 284
Target Start/End: Original strand, 12212 - 12298
Alignment:
Q  198 caaagttttcaggaagatccacaagactatcactgacgggagataaaaaatattcaagattttttgtatgcaatattgatgatggaa 284  Q
    |||||||||||| ||||| |||||||| ||||||||  ||| | ||||| | | |||||||||||| |||||||| |||||||||||    
T  12212 caaagttttcagtaagattcacaagacaatcactgattggaaagaaaaagtttccaagattttttgcatgcaataatgatgatggaa 12298  T

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