View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20522_low_5 (Length: 441)
Name: NF20522_low_5
Description: NF20522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20522_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 51905284 - 51905599
Alignment:
| Q |
19 |
aatttatcttttagttgtgtgtgcatgttgataaccgttgatgcatattcaacataaggaaatttgatcggacatttaagtgaacaattttaaagagtat |
118 |
Q |
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| T |
51905284 |
aatttatcttttagttctgtgtgcatgttgataaccgttgatgcatattcaacataaggaaatttgatcggacatttaagtgaacaattttaaagagtat |
51905383 |
T |
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| Q |
119 |
gaaggcaagaatcattcaagagtctat-aagtttgcaagaagaatccattgtaagatgtctggacatacaaaacaagttcttaagtagaacctaac-aaa |
216 |
Q |
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| T |
51905384 |
gaaggcaagaatcattcaagagtctataaagtttgcaagaagaatccattgtaagatgtctggacatacaaaacaagttcttaagtagaacctaacaaaa |
51905483 |
T |
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| Q |
217 |
taaaccaaccaaaatacttaatattttcaagaatatcaagcttccaagccaactccaagagttggtagtggtaacatttgaatgagaccgatttggatcg |
316 |
Q |
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| T |
51905484 |
taaaccaaccaaaatacttaatattttcaagaatatcaagcttccaagccaactccaagagttggtagtggtaacatttgaatgagaccgatttggatcg |
51905583 |
T |
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| Q |
317 |
gtgaggctcggatggg |
332 |
Q |
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| T |
51905584 |
gtgaggctcggatggg |
51905599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 366 - 441
Target Start/End: Original strand, 51905636 - 51905711
Alignment:
| Q |
366 |
ttaacagggagtttactaaaatattcttaatttttaaatagaattactttttgtctcaccctattcttcttcatct |
441 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51905636 |
ttaacagggagtttactaaaatattcttaatttttaaatagaattactttttgtctcaccctattcttcttcatct |
51905711 |
T |
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