View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20522_low_6 (Length: 440)
Name: NF20522_low_6
Description: NF20522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20522_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 177 - 412
Target Start/End: Original strand, 9518532 - 9518767
Alignment:
| Q |
177 |
taaacttgacaaacctaaaattcttaccccatttgtctaccttcttaggaatgtaaacctaccccacccaaccaaaatgagcaaagaccttgaaaagatc |
276 |
Q |
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| T |
9518532 |
taaacttgacaaacctaaaattcttaccccatttgtctaccttcttaggaatgtaaacctaccccacccaaccaaaatgagcaaagaccttgaaaagatc |
9518631 |
T |
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| Q |
277 |
actgttagatgatccttatggaatgttaaagaagaaaaaggatgtagagatcttatccaactcccgaactctcccctgtcgttggtgaacttttcccatc |
376 |
Q |
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| T |
9518632 |
actattagatgatccttatggaatgttaaagaagaaaaaggatgtagagatcttatccaactcccgaactctcccctgccgttggtgaacttttcccacc |
9518731 |
T |
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| Q |
377 |
ctcacatttttaaaaaccctagtggacccatccctc |
412 |
Q |
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| T |
9518732 |
ctcacatttttaaaaaccctagtggacccatccctc |
9518767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 9518372 - 9518470
Alignment:
| Q |
16 |
cattaacaaccacatatgaactttcttagctttcgtcaggacacgcaggtatgccacgaaactccgccgaagctcctccatcaccccttctgtcaacaga |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9518372 |
cattaacaaccacatatgaactttcttagctttcgtcaggacacgcatgtatgccacg-aactccgccgaagctcctccatcaccccttctgtcaacaga |
9518470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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