View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20522_low_7 (Length: 432)
Name: NF20522_low_7
Description: NF20522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20522_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 4e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 239 - 416
Target Start/End: Original strand, 24346984 - 24347161
Alignment:
| Q |
239 |
cacaaactcgttcaagaagaacatgcatttccattcgcgcttttgattcatcctccaactccaaaatcgaagaaaaagttgttcaagaaggtgaaaaagt |
338 |
Q |
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| T |
24346984 |
cacaaactcgttcaagaagaacatgcatttccattcgcgcttttgattcttcctccgactccaaaatcgaagaaaaagttgttcaagaaggtgaaaaagt |
24347083 |
T |
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| Q |
339 |
tagaattgctgatgaagattatcctagtggagaatttgaatttgaacctattactggttggaggaatttcgttgttaa |
416 |
Q |
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| T |
24347084 |
tagaattgctgatgaagattatcctagtggagaatttgaatttgaacctattactggttggaggaatttcgttgttaa |
24347161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 24346725 - 24346812
Alignment:
| Q |
14 |
aacgaggacgtggaaaaaattagaccttgtcagctcatcacttca---cttctttttcacattcactttccccaccatcttttccgtt |
98 |
Q |
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| T |
24346725 |
aacgaggacgtggaaaaaattagaccttgtcagctcatcacttcacttcttctttttcacattcactttcctcaccatcttttccgtt |
24346812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 24346840 - 24346912
Alignment:
| Q |
98 |
tacaaacaaaaatgtctacacttcttctacccacacctccccacctcacctccctctaccgccgcaacacctt |
170 |
Q |
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| T |
24346840 |
tacaaacaaaaatgtctacacttcttctacctacacctccccacctcacctccctctaccgccgcaacacctt |
24346912 |
T |
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