View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20523_high_1 (Length: 772)

Name: NF20523_high_1
Description: NF20523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20523_high_1
NF20523_high_1
[»] chr1 (1 HSPs)
chr1 (18-765)||(34670052-34670800)


Alignment Details
Target: chr1 (Bit Score: 686; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 686; E-Value: 0
Query Start/End: Original strand, 18 - 765
Target Start/End: Complemental strand, 34670800 - 34670052
Alignment:
Q  18 catgtatctgatggtgcggtctaacaaagaatcgatgctacactg--aaaccaggaaaacatttgtcagcatgttatatcaaagaaaattgtagctcata 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34670800 catgtatctgatggtgcggtctaacaaagaatcgatgctacactgtgaaaccaggaaaacatttgtcagcatgttatatcaaagaaaattgtagctcata 34670701  T
Q  116 tcatgaatgatagtttgtcacatatcacaaaggttgaatgaagaannnnnnnggaagttggaaacttagaatcacatgtagatgaaatattataagtcag 215  Q
    |||||||||||| ||||||| |||||||||||||| |||||||||       |||| |||||||||||||||||||||||||||||||||||||||||||    
T  34670700 tcatgaatgatattttgtcatatatcacaaaggtttaatgaagaatttttttggaa-ttggaaacttagaatcacatgtagatgaaatattataagtcag 34670602  T
Q  216 ttgaggtttcatttacctttccaccatgagggatgatgccacgcaactctttaagacagtcttggatctgctgccgatcttttggtcgtggccgagtgct 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34670601 ttgaggtttcatttacctttccaccatgagggatgatgccacgcaactctttaagacagtcttgaatctgctgccgatcttttggtcgtggccgagtgct 34670502  T
Q  316 ctcccccggcttagccttcttcttgttgggctttgcgggctcgtccagttttctagggtgtaccggaacagccctcttaaggttgatgctatttctatca 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34670501 ctcccccggcttagccttcttcttgttgggctttgcgggctcgtccagttttctagggtgtaccggaacagccctcttaaggttgatgctatttctatca 34670402  T
Q  416 ttaaccaacatacctacttgtaattttgggagtgtatctttccttgttataacactattggacttgtccaagtcagaaacagaatgcatcaagtttggtc 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34670401 ttaaccaacatacctacttgtaattttgggagtgtatctttccttgttataacactattggacttgtccaagtcagaaacagaatgcatcaagtttggtc 34670302  T
Q  516 tagtttcagttccatcaaggtttgcaaaatgtacttgagtttgattcaagggagaaagttctaccatctgctttttattagatgataacagctcattttc 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34670301 tagtttcagttccatcaaggtttgcaaaatgtacttgagtttgattcaagggagaaagttctaccatctgctttttattagatgataacagctcattttc 34670202  T
Q  616 aaaattagaactattaaaaggattgttgtaaattgcttcacctctcaaaagttcttcaattcctaactctgagaataacctcttccgagtattattagtc 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34670201 aaaattagaactattaaaaggattgttgtaaattgcttcacctctcaaaagctcttcaattcctaactctgagaataacctcttccgagtattatcagtc 34670102  T
Q  716 ggtgtaccggtattcaactctgatatgcattcagaaaagccagtattatc 765  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34670101 ggtgtaccggtattcaactctgatatgcattcagaaaagccagtattatc 34670052  T

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