View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20523_high_12 (Length: 282)
Name: NF20523_high_12
Description: NF20523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20523_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 77 - 265
Target Start/End: Original strand, 30273742 - 30273930
Alignment:
| Q |
77 |
gttgttagacttgtcctcctagaggatttgggtcatgagattaggtctgatgcacatatttacattagcatgaagacatcaaataagtcaaataggcttt |
176 |
Q |
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| T |
30273742 |
gttgttagacttgtcctcctagaggatttgggtcatgagattaggtctgatgcacatatttacattagcatgaagacatcaaataagtcaaataggcttt |
30273841 |
T |
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| Q |
177 |
agactaaagtggaaaactaagattgactcnnnnnnnngtggaaagctaaaattatatagatatattttgaagaaattatacagtggtaa |
265 |
Q |
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| T |
30273842 |
agactaaagtggaaaactaagattgactcaaaaaaaagtggaaagctaaaattatatagatatattttgaagaaattatacagtggtaa |
30273930 |
T |
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