View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20523_high_22 (Length: 235)
Name: NF20523_high_22
Description: NF20523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20523_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 58 - 210
Target Start/End: Original strand, 28045737 - 28045890
Alignment:
| Q |
58 |
atcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaactttcgttaacctaattttttaataataagaccgaagtgagtactta-tt |
156 |
Q |
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| T |
28045737 |
atcaacaagaattgatgtatctgatctgaattttgagtcagatatatcaactttcgttaacctaattttttaataataagaccgaagtgagtacttattt |
28045836 |
T |
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| Q |
157 |
ttaaaaatttacatttaaatctactttatatttgatgaggttgaatttttggtc |
210 |
Q |
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| T |
28045837 |
ttaaaaatttacatttcaatctactttatatttgatgaggttgaatttttggtc |
28045890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 21537963 - 21537907
Alignment:
| Q |
59 |
tcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaactttcgtt |
115 |
Q |
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| T |
21537963 |
tcaacaaaagttgatgtatctgaactaaaatttgaatcagatacatcaactttcgtt |
21537907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 30800461 - 30800521
Alignment:
| Q |
59 |
tcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaactttcgttaacc |
119 |
Q |
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| T |
30800461 |
tcaacaaaagttgatgtatctatactgaattttgaatcagatacatcaacttttgttaacc |
30800521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 42842923 - 42842868
Alignment:
| Q |
56 |
tgatcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaacttt |
111 |
Q |
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| T |
42842923 |
tgatcaacaaaaattgatgtatttgaactaaattttgaatcagatgtatcaacttt |
42842868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 28463647 - 28463701
Alignment:
| Q |
59 |
tcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaactttcg |
113 |
Q |
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||||||||| ||||||||| || ||||||||||| |||||||||||||||||| |
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| T |
28463647 |
tcaacaaaagttgatgtatttggactgaattttgaaccagatatatcaactttcg |
28463701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 24692072 - 24692021
Alignment:
| Q |
59 |
tcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaacttt |
111 |
Q |
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||||||||| ||||||||||||| ||||||||| | |||||||||||||||| |
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| T |
24692072 |
tcaacaaaagttgatgtatctgaactgaatttt-aaccagatatatcaacttt |
24692021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 14706734 - 14706799
Alignment:
| Q |
61 |
aacaaaaattgatgtatctgatctgaattttgagtcagatatatcaactttcgttaacctaatttt |
126 |
Q |
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| T |
14706734 |
aacaaaagttgatgtatctgaattgaattgttaatcagatatatcaacttttgttgaccgaatttt |
14706799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 7269499 - 7269439
Alignment:
| Q |
59 |
tcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaactttcgttaacc |
119 |
Q |
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||||||||||||||||||||| | ||||||||| | ||||| ||||||||| ||||||| |
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| T |
7269499 |
tcaacaaaaattgatgtatctaaactgaatttttaaccagatgcatcaacttttgttaacc |
7269439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 17344248 - 17344301
Alignment:
| Q |
58 |
atcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaacttt |
111 |
Q |
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|||||||||| ||||||||||||| ||||||||| | || |||| ||||||||| |
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| T |
17344248 |
atcaacaaaagttgatgtatctgaactgaatttttaatcggatacatcaacttt |
17344301 |
T |
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