View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20523_high_23 (Length: 235)

Name: NF20523_high_23
Description: NF20523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20523_high_23
NF20523_high_23
[»] chr6 (26 HSPs)
chr6 (95-220)||(25483459-25483584)
chr6 (95-220)||(26056322-26056447)
chr6 (95-220)||(26076292-26076417)
chr6 (96-220)||(25511343-25511463)
chr6 (95-220)||(26143267-26143393)
chr6 (95-220)||(25538942-25539068)
chr6 (1-60)||(25538848-25538907)
chr6 (1-60)||(26143173-26143232)
chr6 (1-55)||(25580027-25580081)
chr6 (95-220)||(25580121-25580247)
chr6 (1-60)||(26056234-26056293)
chr6 (1-60)||(26076204-26076263)
chr6 (1-60)||(25482050-25482109)
chr6 (1-57)||(27592843-27592899)
chr6 (1-57)||(27677437-27677493)
chr6 (1-57)||(27679254-27679310)
chr6 (1-57)||(27706225-27706281)
chr6 (1-57)||(26802750-26802806)
chr6 (21-60)||(25511268-25511307)
chr6 (135-209)||(26646920-26646993)
chr6 (135-209)||(26752888-26752961)
chr6 (1-60)||(26646787-26646843)
chr6 (1-60)||(26752755-26752811)
chr6 (148-208)||(27604373-27604433)
chr6 (1-57)||(27698317-27698373)
chr6 (1-41)||(27718218-27718258)
[»] chr1 (1 HSPs)
chr1 (1-60)||(28127489-28127545)
[»] scaffold0349 (2 HSPs)
scaffold0349 (1-41)||(3259-3299)
scaffold0349 (1-41)||(14195-14235)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 25483459 - 25483584
Alignment:
Q  95 atgcctaaataatctactcttaaagcttaaacatggagcgatttctattaatggttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaatt 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25483459 atgcctaaataatctactcttaaagcttaaacatggagcgatttctattaatggttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaatt 25483558  T
Q  195 gcataatctattctcaatgcatggat 220  Q
    |||| || ||||||||||||||||||    
T  25483559 gcatgatatattctcaatgcatggat 25483584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 26056322 - 26056447
Alignment:
Q  95 atgcctaaataatctactcttaaagcttaaacatggagcgatttctattaatggttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaatt 194  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26056322 atgcctaaataatctactcttaaagcttaaacatggagggatttctatcaatggttttaaaactagtgtaagttatttatatgtcaaaaaagttagaatt 26056421  T
Q  195 gcataatctattctcaatgcatggat 220  Q
    ||||||| |||| ||||| |||||||    
T  26056422 gcataatatattatcaatacatggat 26056447  T

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Target: chr6; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 26076292 - 26076417
Alignment:
Q  95 atgcctaaataatctactcttaaagcttaaacatggagcgatttctattaatggttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaatt 194  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26076292 atgcctaaataatctactcttaaagcttaaacatggagggatttctatcaatggttttaaaactagtgtaagttatttatatgtcaaaaaagttagaatt 26076391  T
Q  195 gcataatctattctcaatgcatggat 220  Q
    ||||||| |||| ||||| |||||||    
T  26076392 gcataatatattatcaatacatggat 26076417  T

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Target: chr6; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 96 - 220
Target Start/End: Original strand, 25511343 - 25511463
Alignment:
Q  96 tgcctaaataatctactcttaaagcttaaacatggagcgatttctattaatggttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaattg 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||| |||||| |||||||||    
T  25511343 tgcctaaataatctactcttaaagcttaaacatggagcgatttctattaatggttttaaaacaagtgtaag----ttatatgtaaaaaaatttagaattg 25511438  T
Q  196 cataatctattctcaatgcatggat 220  Q
    |||||| |||| ||||| |||||||    
T  25511439 cataatatattatcaatacatggat 25511463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 26143267 - 26143393
Alignment:
Q  95 atgcctaaataatctactcttaaagcttaaacatggagcgattt-ctattaatggttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaat 193  Q
    |||||||||||||||||||| |||||||||| | | |   |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26143267 atgcctaaataatctactctcaaagcttaaataggaacacattttctattaatgtttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaat 26143366  T
Q  194 tgcataatctattctcaatgcatggat 220  Q
    |||||||| |||||||||| |||||||    
T  26143367 tgcataatatattctcaatacatggat 26143393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 25538942 - 25539068
Alignment:
Q  95 atgcctaaataatctactcttaaagcttaaacatggagcgattt-ctattaatggttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaat 193  Q
    |||||||||||||||||||||||| |||||| | | |   |||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  25538942 atgcctaaataatctactcttaaaacttaaataggaacacattttctattaatgtttttaaaacaagtgtaagttatttatatgtcaaaaaaattagaat 25539041  T
Q  194 tgcataatctattctcaatgcatggat 220  Q
    |||||||| |||||||||| |||||||    
T  25539042 tgcataatatattctcaatacatggat 25539068  T

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Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 25538848 - 25538907
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatcttg 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25538848 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatcttg 25538907  T

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Target: chr6; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 26143173 - 26143232
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatcttg 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26143173 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaaacttg 26143232  T

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Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 25580027 - 25580081
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaa 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25580027 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaa 25580081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 25580121 - 25580247
Alignment:
Q  95 atgcctaaataatctactcttaaagcttaaacatggagcgattt-ctattaatggttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaat 193  Q
    |||||| ||||||||| |||| ||||||||| | | |  ||||| ||||||||| ||||||||||||||||||||| |||||| ||||||||| ||||||    
T  25580121 atgcctcaataatctaatcttcaagcttaaataggaacagattttctattaatgtttttaaaacaagtgtaagttaattatatttcaaaaaaggtagaat 25580220  T
Q  194 tgcataatctattctcaatgcatggat 220  Q
    || ||||| | |||||||| |||||||    
T  25580221 tgaataatattttctcaatacatggat 25580247  T

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Target: chr6; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 26056234 - 26056293
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatcttg 60  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  26056234 tgctaacttgtccggctatcattatagtcctcatgagtaccctactttacttaaatcttg 26056293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 26076204 - 26076263
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatcttg 60  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  26076204 tgctaacttgtccggctatcattatagtcctcatgagtaccctactttacttaaatcttg 26076263  T

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Target: chr6; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 25482050 - 25482109
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatcttg 60  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  25482050 tgctaatttgtccggctatcattatagtcctcatgagtaccccactttacttaaaacttg 25482109  T

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Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27592899 - 27592843
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatc 57  Q
    |||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||    
T  27592899 tgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatc 27592843  T

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Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27677493 - 27677437
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatc 57  Q
    |||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||    
T  27677493 tgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatc 27677437  T

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Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 27679254 - 27679310
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatc 57  Q
    |||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||    
T  27679254 tgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatc 27679310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27706281 - 27706225
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatc 57  Q
    |||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||    
T  27706281 tgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatc 27706225  T

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Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 26802750 - 26802806
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatc 57  Q
    |||||||||||||||||| ||| ||||||||| | ||||||| ||||||||||||||    
T  26802750 tgctaacttgtccggctaccatgatagtcctcctcggtacccaactttacttaaatc 26802806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 25511268 - 25511307
Alignment:
Q  21 attatagtcctcatgggtaccccactttacttaaatcttg 60  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  25511268 attatagtcctcatgggtaccctactttacttaaatcttg 25511307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 26646920 - 26646993
Alignment:
Q  135 atttctattaatggttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaattgcataatctattctc 209  Q
    |||| |||||||| ||||||| ||||| ||| ||||||||||||||||| |||||||| || ||||| |||||||    
T  26646920 atttttattaatgtttttaaa-caagtataaattatttatatgtcaaaagagttagaactgtataatatattctc 26646993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 26752888 - 26752961
Alignment:
Q  135 atttctattaatggttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaattgcataatctattctc 209  Q
    |||| |||||||| ||||||| ||||| ||| ||||||||||||||||| |||||||| || ||||| |||||||    
T  26752888 atttttattaatgtttttaaa-caagtataaattatttatatgtcaaaagagttagaactgtataatatattctc 26752961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 26646787 - 26646843
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatcttg 60  Q
    ||||||||||||||| || |||||||||||   |||||||||||||||||||||| ||||    
T  26646787 tgctaacttgtccggataccattatagtcc---tgggtaccccactttacttaaaccttg 26646843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 26752755 - 26752811
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatcttg 60  Q
    ||||||||||||||| || |||||||||||   |||||||||||||||||||||| ||||    
T  26752755 tgctaacttgtccggataccattatagtcc---tgggtaccccactttacttaaaccttg 26752811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 27604433 - 27604373
Alignment:
Q  148 gttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaattgcataatctattct 208  Q
    ||||| |||||||| | ||||||||||||||||||| |||||||| || ||||| ||||||    
T  27604433 gtttttaaacaagtattagttatttatatgtcaaaatagttagaaatgtataatatattct 27604373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27698373 - 27698317
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatc 57  Q
    |||||||||||||||||| ||| |||||||||   ||||||| ||||||||||||||    
T  27698373 tgctaacttgtccggctaccatgatagtcctcccaggtacccaactttacttaaatc 27698317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 27718258 - 27718218
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtacc 41  Q
    |||||||||||||||||| ||| ||||||||| ||||||||    
T  27718258 tgctaacttgtccggctaccatgatagtcctcctgggtacc 27718218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 28127545 - 28127489
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatcttg 60  Q
    |||||||||||||||||| |||||||||||    |||||||| ||| |||||||||||||    
T  28127545 tgctaacttgtccggctaccattatagtcc---agggtaccctactatacttaaatcttg 28127489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 3299 - 3259
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtacc 41  Q
    |||||||||||||||||| ||| ||||||||| ||||||||    
T  3299 tgctaacttgtccggctaccatgatagtcctcctgggtacc 3259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 14235 - 14195
Alignment:
Q  1 tgctaacttgtccggctatcattatagtcctcatgggtacc 41  Q
    |||||||||||||||||| ||| ||||||||| ||||||||    
T  14235 tgctaacttgtccggctaccatgatagtcctcctgggtacc 14195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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