View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20523_high_3 (Length: 653)
Name: NF20523_high_3
Description: NF20523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20523_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 10 - 602
Target Start/End: Complemental strand, 29064026 - 29063430
Alignment:
| Q |
10 |
aagaatatgacagagagaaagagaattaataagaggaaaaaa-ttcaattttgaacaaattaatactagaaacttcacacttttaattctaaatcaaaac |
108 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29064026 |
aagaatatgacagagagacagagaattaataagaggaaaaaaattcaattttgaacaaattaatactagaaacttcacacttttaattctaaatcaaaac |
29063927 |
T |
|
| Q |
109 |
ataaaaactccattaaaatgcaacagcatttcaaaggaaaaatgtctcnnnnnnn-ctttctacttttacagggaattttctacactcactcac--acta |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29063926 |
ataaaaactccattaaaatgcaacagcatttcaaaggaaaaatgtcttttttttttctttctacttttacagggaattttctacactcactcactcacta |
29063827 |
T |
|
| Q |
206 |
tgttgctggaaagtgttactctttatcaccacaaacttcaacttttaccccaaattgagaacaaatcctagcatcttctgcaccattctttgaattaaaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29063826 |
tgttgctggaaagtgttactctttatcaccacaaacttcaacttttacaccaaattgagaacaaatcctagcatcttctgcaccattctttgaattaaaa |
29063727 |
T |
|
| Q |
306 |
tgttgttgagactgtttacaatgtgcaatagctccttcaactgaaccttccacctcataattagcactaatactcctcttaaacaattgtaaatcataat |
405 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29063726 |
tgttgctgagactgtttacaatgtgcaatagctccttcaactgaaccttccacctcataattagcactaatactcctcttaaacaattgtaaatcataat |
29063627 |
T |
|
| Q |
406 |
tacccgatgaactaaacgaaaaagacgaagaatttgaagatgacccggatgaagatgttgataaagatgaaaccttgttgctaccacaatgtctttgaac |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29063626 |
tacccgatgaactaaacgaaaaagacgaagaatttgaagatgacccggatgaagatgttgacaaagatgaaaccttgttgctaccacaatgtctttgaac |
29063527 |
T |
|
| Q |
506 |
cactccagagaaagatttcctatggttgacaaaatcatcttcaaccatgtctcttttaacttgtttcttactttcctcacaaaaaacctcaaatgag |
602 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29063526 |
cactccagagaaagatttcctatggttgacaaaatcatcttcaaccatgtctcttttaacttgtttcttattttcctcacaaaaaacctcaaatgag |
29063430 |
T |
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