View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20523_high_4 (Length: 646)

Name: NF20523_high_4
Description: NF20523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20523_high_4
NF20523_high_4
[»] chr1 (23 HSPs)
chr1 (10-629)||(30027014-30027617)
chr1 (510-581)||(29570686-29570757)
chr1 (511-572)||(45682548-45682609)
chr1 (503-572)||(26095632-26095700)
chr1 (504-579)||(24234633-24234707)
chr1 (503-572)||(1501622-1501690)
chr1 (503-572)||(9877546-9877614)
chr1 (504-572)||(44344127-44344194)
chr1 (442-486)||(45682595-45682639)
chr1 (505-572)||(8641048-8641114)
chr1 (535-572)||(8828682-8828719)
chr1 (535-572)||(10296695-10296732)
chr1 (535-572)||(12650025-12650062)
chr1 (535-572)||(17504146-17504183)
chr1 (520-581)||(28552135-28552196)
chr1 (435-480)||(29570731-29570776)
chr1 (535-572)||(32694482-32694519)
chr1 (535-572)||(33471585-33471622)
chr1 (515-572)||(34704474-34704531)
chr1 (535-572)||(35521324-35521361)
chr1 (535-572)||(40934592-40934629)
chr1 (535-572)||(46283576-46283613)
chr1 (536-572)||(27065248-27065284)
[»] chr2 (23 HSPs)
chr2 (452-581)||(474648-474777)
chr2 (442-572)||(22399109-22399239)
chr2 (503-572)||(9912055-9912123)
chr2 (503-572)||(42950662-42950730)
chr2 (503-572)||(44490447-44490515)
chr2 (441-572)||(23926472-23926602)
chr2 (467-513)||(41537636-41537682)
chr2 (535-572)||(341415-341452)
chr2 (535-572)||(1270283-1270320)
chr2 (535-572)||(3322167-3322204)
chr2 (535-572)||(3888974-3889011)
chr2 (535-572)||(9027128-9027165)
chr2 (535-572)||(10192259-10192296)
chr2 (535-572)||(11724720-11724757)
chr2 (535-572)||(16350695-16350732)
chr2 (535-572)||(17549243-17549280)
chr2 (535-572)||(22196097-22196134)
chr2 (535-572)||(22486170-22486207)
chr2 (535-572)||(22899122-22899159)
chr2 (535-572)||(26499514-26499551)
chr2 (535-572)||(29175098-29175135)
chr2 (535-572)||(30488183-30488220)
chr2 (535-572)||(35412051-35412088)
[»] chr8 (13 HSPs)
chr8 (442-581)||(24566501-24566640)
chr8 (442-579)||(43497303-43497439)
chr8 (442-579)||(26187210-26187346)
chr8 (507-572)||(1802691-1802756)
chr8 (442-579)||(12649576-12649712)
chr8 (503-572)||(39198720-39198788)
chr8 (512-572)||(32478083-32478142)
chr8 (505-572)||(148396-148462)
chr8 (442-493)||(2241553-2241604)
chr8 (535-572)||(8156882-8156919)
chr8 (535-572)||(33279110-33279147)
chr8 (503-572)||(41617183-41617251)
chr8 (535-572)||(42684891-42684928)
[»] chr6 (22 HSPs)
chr6 (442-581)||(34493665-34493804)
chr6 (441-572)||(1368266-1368396)
chr6 (513-572)||(10384191-10384250)
chr6 (503-572)||(8129676-8129744)
chr6 (448-581)||(1375860-1375992)
chr6 (448-581)||(1383608-1383740)
chr6 (503-572)||(9546514-9546582)
chr6 (473-578)||(17312275-17312380)
chr6 (535-572)||(17853746-17853783)
chr6 (512-572)||(3012016-3012075)
chr6 (512-572)||(9515503-9515563)
chr6 (505-572)||(3105707-3105773)
chr6 (535-572)||(685056-685093)
chr6 (535-572)||(2316663-2316700)
chr6 (535-572)||(8487965-8488002)
chr6 (503-572)||(12240623-12240692)
chr6 (535-572)||(13178326-13178363)
chr6 (535-572)||(13853245-13853282)
chr6 (535-572)||(20027947-20027984)
chr6 (535-572)||(22568937-22568974)
chr6 (535-572)||(24325095-24325132)
chr6 (535-572)||(25026078-25026115)
[»] chr4 (27 HSPs)
chr4 (201-291)||(12725345-12725435)
chr4 (441-581)||(33815346-33815486)
chr4 (442-525)||(17040057-17040140)
chr4 (481-571)||(47122541-47122631)
chr4 (535-572)||(8358546-8358583)
chr4 (451-572)||(30534629-30534750)
chr4 (442-570)||(23962952-23963079)
chr4 (386-429)||(12725227-12725270)
chr4 (503-572)||(32922170-32922238)
chr4 (503-572)||(46689300-46689368)
chr4 (504-572)||(7067386-7067453)
chr4 (504-572)||(52538023-52538090)
chr4 (505-572)||(16020060-16020126)
chr4 (503-578)||(18635983-18636057)
chr4 (435-482)||(35222021-35222068)
chr4 (442-493)||(54997038-54997089)
chr4 (535-572)||(17362472-17362509)
chr4 (535-572)||(22539861-22539898)
chr4 (503-572)||(24270505-24270573)
chr4 (535-572)||(25331991-25332028)
chr4 (535-572)||(26842903-26842940)
chr4 (503-572)||(26886753-26886821)
chr4 (535-572)||(41935596-41935633)
chr4 (474-559)||(49860772-49860856)
chr4 (508-572)||(2272580-2272644)
chr4 (535-579)||(30637042-30637086)
chr4 (504-572)||(49387327-49387394)
[»] chr7 (26 HSPs)
chr7 (441-572)||(41316973-41317103)
chr7 (451-581)||(44533586-44533716)
chr7 (442-578)||(43268011-43268146)
chr7 (480-570)||(37900544-37900634)
chr7 (480-570)||(37907055-37907145)
chr7 (441-572)||(41054674-41054805)
chr7 (505-572)||(47221852-47221918)
chr7 (442-572)||(32064493-32064621)
chr7 (503-572)||(2699760-2699828)
chr7 (503-572)||(31283257-31283325)
chr7 (503-572)||(42391399-42391467)
chr7 (505-572)||(20121350-20121416)
chr7 (505-572)||(24331482-24331548)
chr7 (505-572)||(41749725-41749791)
chr7 (505-572)||(41857244-41857310)
chr7 (505-572)||(44457887-44457953)
chr7 (442-572)||(8949395-8949524)
chr7 (535-572)||(8805847-8805884)
chr7 (535-572)||(11338066-11338103)
chr7 (535-572)||(17173192-17173229)
chr7 (535-572)||(31813904-31813941)
chr7 (535-572)||(45055425-45055462)
chr7 (535-572)||(46738438-46738475)
chr7 (535-572)||(49114445-49114482)
chr7 (442-490)||(10543595-10543643)
chr7 (533-581)||(45533809-45533857)
[»] chr5 (18 HSPs)
chr5 (442-578)||(12875748-12875884)
chr5 (510-580)||(13675812-13675882)
chr5 (503-572)||(2467202-2467270)
chr5 (503-572)||(7601736-7601804)
chr5 (503-572)||(13577406-13577474)
chr5 (537-581)||(26349238-26349282)
chr5 (505-572)||(39589721-39589787)
chr5 (505-572)||(42610884-42610950)
chr5 (535-572)||(1099066-1099103)
chr5 (535-572)||(3279362-3279399)
chr5 (535-572)||(13697492-13697529)
chr5 (535-572)||(14871837-14871874)
chr5 (535-572)||(16736906-16736943)
chr5 (535-572)||(18707373-18707410)
chr5 (535-572)||(31618341-31618378)
chr5 (535-572)||(32772165-32772202)
chr5 (535-572)||(33429636-33429673)
chr5 (535-572)||(40952171-40952208)
[»] chr3 (22 HSPs)
chr3 (203-291)||(34280074-34280162)
chr3 (387-429)||(34280231-34280273)
chr3 (535-581)||(48738173-48738219)
chr3 (503-572)||(45214520-45214588)
chr3 (467-579)||(2397882-2397993)
chr3 (505-572)||(25061445-25061511)
chr3 (499-581)||(11471860-11471941)
chr3 (510-572)||(29560440-29560502)
chr3 (503-572)||(2773299-2773367)
chr3 (535-572)||(11221166-11221203)
chr3 (535-572)||(13997091-13997128)
chr3 (535-572)||(15543102-15543139)
chr3 (503-572)||(18168857-18168925)
chr3 (503-572)||(28843835-28843903)
chr3 (535-572)||(29434404-29434441)
chr3 (535-572)||(44664724-44664761)
chr3 (535-572)||(44920001-44920038)
chr3 (535-572)||(46292685-46292722)
chr3 (535-572)||(49002409-49002446)
chr3 (499-571)||(11839287-11839358)
chr3 (536-572)||(39778454-39778490)
chr3 (504-572)||(44036789-44036856)
[»] scaffold0009 (1 HSPs)
scaffold0009 (505-572)||(258900-258966)
[»] scaffold0592 (1 HSPs)
scaffold0592 (535-572)||(8562-8599)
[»] scaffold0119 (1 HSPs)
scaffold0119 (535-572)||(41382-41419)
[»] scaffold0003 (1 HSPs)
scaffold0003 (535-572)||(323587-323624)


Alignment Details
Target: chr1 (Bit Score: 497; Significance: 0; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 10 - 629
Target Start/End: Complemental strand, 30027617 - 30027014
Alignment:
Q  10 attatactataattaagaccttgtatacaacttaagtcagaataaaaattgtgttgaataaccgaacaacatttcggagttcaaattctgatcgcaacat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30027617 attatactataattaagaccttgtatacaacttaagtcagaataaaaattgtgttgaataaccgaacaacatttcggagttcaaattctgatcgcaacat 30027518  T
Q  110 caatttcaaatttttgaagtaactagttggttttactcaaccctatttataacatttgggatcaggtatttgcatgccaaccctaatcaagaaaatgcag 209  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  30027517 caatttcaaatttttgaagtaactagttgtttttactcaaccccatttataacatttggggacaggtatttgcatgccaaccctaatcaagaaaatgcag 30027418  T
Q  210 caaagaaaatcaacgttgggaagaccatctggaaccgatgcttctgattattcctaccgtatggtagttgattcaagtcagtgccattcgccaaaatact 309  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30027417 caaagaaaatcaacattgggaagaccatctggaaccgatgcttctgattattcctaccgtatggtagttgattcaagtcagtgccattcgccaaaatact 30027318  T
Q  310 aaataatccnnnnnnnnnngttctaaaattttgataattttatatcaaatctctannnnnnnnaattcaatcatggtttttgttaattaggttatcaact 409  Q
    || |               ||||||||||||||||||||||||||||||||| ||        |||||||||||||||||||||||||||||||||||||    
T  30027317 aatt---------------gttctaaaattttgataattttatatcaaatctata-tttttttaattcaatcatggtttttgttaattaggttatcaact 30027234  T
Q  410 tgttgcaaagggaaagaaacctatctttgttattttggtccatttgcatatggagtatcaagcttcaaatctatggttttatttctctgtgagctttcag 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30027233 tgttgcaaagggaaagaaacctatctttgttattttggtccatttgcataaggagtatcaagcttcaaatctatggttttatttctctatgagctttcag 30027134  T
Q  510 tcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaatcgatatgcattgcaaacagactaaaagaatcaaaatg 609  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30027133 tcttcaaatctatggttcttcagccatgtttgcatatgaattttagatttgaagcttgaaaatcgatatgcattgcaaacagactaaaagaatcaaaatg 30027034  T
Q  610 gcatgaaataaagataacag 629  Q
    | ||||||||||||||||||    
T  30027033 gaatgaaataaagataacag 30027014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 510 - 581
Target Start/End: Original strand, 29570686 - 29570757
Alignment:
Q  510 tcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaatcgatatgca 581  Q
    ||||||||||||||||  |||| | ||||||||||||||||||| ||||||||||||||||||  |||||||    
T  29570686 tcttcaaatctatggtctttcacctatgtttgcatatgaatctttgatttgaagcttgaaaatacatatgca 29570757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 511 - 572
Target Start/End: Complemental strand, 45682609 - 45682548
Alignment:
Q  511 cttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    |||||||||||||||  |||| |||||||||||||||||||||| |||| ||||||||||||    
T  45682609 cttcaaatctatggtctttcatccatgtttgcatatgaatcttatatttaaagcttgaaaat 45682548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 503 - 572
Target Start/End: Original strand, 26095632 - 26095700
Alignment:
Q  503 ctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||||| |||| |  | ||||||||||| |||| |||||||||||||||||||||    
T  26095632 ctttcagtcttcaaatctatgattct-cgtctatgtttgcataagaatattagatttgaagcttgaaaat 26095700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 504 - 579
Target Start/End: Complemental strand, 24234707 - 24234633
Alignment:
Q  504 tttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaatcgatatg 579  Q
    ||||| ||||||||| |||||| ||||| | ||||||||||| |||| | |||||||||||||||||||| |||||    
T  24234707 tttcaatcttcaaatttatggt-cttcatctatgtttgcataagaatataagatttgaagcttgaaaatccatatg 24234633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 503 - 572
Target Start/End: Complemental strand, 1501690 - 1501622
Alignment:
Q  503 ctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    |||||| |||||||||||||| || |||  | ||||||||||| |||| |||||||||||||||||||||    
T  1501690 ctttcaatcttcaaatctatgatt-ttcgtctatgtttgcataagaatattagatttgaagcttgaaaat 1501622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 503 - 572
Target Start/End: Original strand, 9877546 - 9877614
Alignment:
Q  503 ctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||||| | || |  | ||||||||||| |||| |||||||||||||||||||||    
T  9877546 ctttcagtcttcaaatctatgatcct-cgtctatgtttgcataagaatattagatttgaagcttgaaaat 9877614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 504 - 572
Target Start/End: Complemental strand, 44344194 - 44344127
Alignment:
Q  504 tttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    |||||||||||||||||||| | ||||  | ||||||||||| |||| | |||||||||||||||||||    
T  44344194 tttcagtcttcaaatctatgat-cttcgtctatgtttgcataagaatataagatttgaagcttgaaaat 44344127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 442 - 486
Target Start/End: Complemental strand, 45682639 - 45682595
Alignment:
Q  442 ttttggtccatttgcatatggagtatcaagcttcaaatctatggt 486  Q
    ||||||||||| |||||||||| | ||||||||||||||||||||    
T  45682639 ttttggtccatgtgcatatggaatttcaagcttcaaatctatggt 45682595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 572
Target Start/End: Complemental strand, 8641114 - 8641048
Alignment:
Q  505 ttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||| | | || || |||||| |||| |||| |||||||||||||||||||||    
T  8641114 ttcagtcttcaaatctatgat-catcggctatgttttcataagaatattagatttgaagcttgaaaat 8641048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 8828719 - 8828682
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  8828719 atgtttgcataagaatattagatttgaagcttgaaaat 8828682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 10296732 - 10296695
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  10296732 atgtttgcataagaatattagatttgaagcttgaaaat 10296695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 12650062 - 12650025
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  12650062 atgtttgcataagaatattagatttgaagcttgaaaat 12650025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 17504183 - 17504146
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  17504183 atgtttgcataagaatattagatttgaagcttgaaaat 17504146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 581
Target Start/End: Original strand, 28552135 - 28552196
Alignment:
Q  520 tatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaatcgatatgca 581  Q
    |||||| |||||  ||||||| ||||||||| |||||||||  ||||||||||| |||||||    
T  28552135 tatggtccttcaatcatgttttcatatgaattttagatttgctgcttgaaaatctatatgca 28552196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 480
Target Start/End: Complemental strand, 29570776 - 29570731
Alignment:
Q  435 tttgttattttggtccatttgcatatggagtatcaagcttcaaatc 480  Q
    |||||| |||||||||||||||||||| | | ||||||||||||||    
T  29570776 tttgttcttttggtccatttgcatatgtattttcaagcttcaaatc 29570731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 32694482 - 32694519
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  32694482 atgtttgcataagaatattagatttgaagcttgaaaat 32694519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 33471585 - 33471622
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  33471585 atgtttgcataagaatattagatttgaagcttgaaaat 33471622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 572
Target Start/End: Complemental strand, 34704531 - 34704474
Alignment:
Q  515 aaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    |||| ||||||||||||  ||||||| ||||||||| ||||||||||  |||||||||    
T  34704531 aaatgtatggttcttcattcatgttttcatatgaattttagatttgatacttgaaaat 34704474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 35521361 - 35521324
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  35521361 atgtttgcataagaatattagatttgaagcttgaaaat 35521324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 40934592 - 40934629
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  40934592 atgtttgcataagaatattagatttgaagcttgaaaat 40934629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 46283576 - 46283613
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  46283576 atgtttgcataagaatattagatttgaagcttgaaaat 46283613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 572
Target Start/End: Complemental strand, 27065284 - 27065248
Alignment:
Q  536 tgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    |||||||||| |||| |||||||||||||||||||||    
T  27065284 tgtttgcataagaatattagatttgaagcttgaaaat 27065248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 5e-36; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 452 - 581
Target Start/End: Original strand, 474648 - 474777
Alignment:
Q  452 tttgcatatggagtatcaagcttcaaatctatggttttatttctctgtgagctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatc 551  Q
    |||||||||| | | |||||||||||||| ||||||||||||  ||||||| | |||||||||||||||||||| ||||| |||||||||||||||||||    
T  474648 tttgcatatgaattttcaagcttcaaatcgatggttttattttcctgtgagttctcagtcttcaaatctatggtccttcacccatgtttgcatatgaatc 474747  T
Q  552 ttagatttgaagcttgaaaatcgatatgca 581  Q
    ||| |||||||||||||||||  |||||||    
T  474748 ttaaatttgaagcttgaaaattcatatgca 474777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 442 - 572
Target Start/End: Complemental strand, 22399239 - 22399109
Alignment:
Q  442 ttttggtccatttgcatatggagtatcaagcttcaaatctatggttttatttctct-gtgagctttcagtcttcaaatctatggttcttcagccatgttt 540  Q
    ||||||| |||||||||||| | | ||||||||||||| ||| |||||| || ||| |||| || ||||| || |||| ||||||  |||| | ||||||    
T  22399239 ttttggtacatttgcatatgaattttcaagcttcaaatatattgttttaatt-tctagtgacctctcagttttaaaatttatggtctttcacctatgttt 22399141  T
Q  541 gcatatgaatcttagatttgaagcttgaaaat 572  Q
     ||| |||||||||||||||||||||||||||    
T  22399140 acatttgaatcttagatttgaagcttgaaaat 22399109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 503 - 572
Target Start/End: Original strand, 9912055 - 9912123
Alignment:
Q  503 ctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    |||||| |||||||||||||| |||| |  | ||||||||||| |||| |||||||||||||||||||||    
T  9912055 ctttcaatcttcaaatctatgattct-cgtctatgtttgcataagaatattagatttgaagcttgaaaat 9912123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 503 - 572
Target Start/End: Original strand, 42950662 - 42950730
Alignment:
Q  503 ctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||||| | || |  | ||||||||||| |||| |||||||||||||||||||||    
T  42950662 ctttcagtcttcaaatctatgatcct-cttctatgtttgcataagaatattagatttgaagcttgaaaat 42950730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 503 - 572
Target Start/End: Original strand, 44490447 - 44490515
Alignment:
Q  503 ctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||||| | || |  | ||||||||||| |||| |||||||||||||||||||||    
T  44490447 ctttcagtcttcaaatctatgatcct-cgtctatgtttgcataagaatattagatttgaagcttgaaaat 44490515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 572
Target Start/End: Original strand, 23926472 - 23926602
Alignment:
Q  441 attttggtccatttgcatatggagtatcaagcttcaaatctatggttttatttctctgtgagctttcagtcttcaaatctatggttcttcagccatgttt 540  Q
    ||||| |||||||| |||||| | | | |||||| ||||  ||| |||||||| | | ||  |||||| |||||||||||||| | || |  | ||||||    
T  23926472 atttttgtccattttcatatgaatttttaagcttaaaattcatgattttatttttttatggtctttcaatcttcaaatctatgatcct-cgtctatgttt 23926570  T
Q  541 gcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||| |||| |||||||||||||||||||||    
T  23926571 gcataagaatattagatttgaagcttgaaaat 23926602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 467 - 513
Target Start/End: Complemental strand, 41537682 - 41537636
Alignment:
Q  467 tcaagcttcaaatctatggttttatttctctgtgagctttcagtctt 513  Q
    ||||||||||||||||||||||| |||| | ||||||| ||||||||    
T  41537682 tcaagcttcaaatctatggttttctttcgcagtgagctctcagtctt 41537636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 341452 - 341415
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  341452 atgtttgcataagaatattagatttgaagcttgaaaat 341415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 1270283 - 1270320
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  1270283 atgtttgcataagaatattagatttgaagcttgaaaat 1270320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 3322167 - 3322204
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  3322167 atgtttgcataagaatattagatttgaagcttgaaaat 3322204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 3889011 - 3888974
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  3889011 atgtttgcataagaatattagatttgaagcttgaaaat 3888974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 9027165 - 9027128
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  9027165 atgtttgcataagaatattagatttgaagcttgaaaat 9027128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 10192259 - 10192296
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  10192259 atgtttgcataagaatattagatttgaagcttgaaaat 10192296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 11724757 - 11724720
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  11724757 atgtttgcataagaatattagatttgaagcttgaaaat 11724720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 16350732 - 16350695
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  16350732 atgtttgcataagaatattagatttgaagcttgaaaat 16350695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 17549243 - 17549280
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  17549243 atgtttgcataagaatattagatttgaagcttgaaaat 17549280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 22196097 - 22196134
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  22196097 atgtttgcataagaatattagatttgaagcttgaaaat 22196134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 22486170 - 22486207
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  22486170 atgtttgcataagaatattagatttgaagcttgaaaat 22486207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 22899159 - 22899122
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  22899159 atgtttgcataagaatattagatttgaagcttgaaaat 22899122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 26499551 - 26499514
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  26499551 atgtttgcataagaatattagatttgaagcttgaaaat 26499514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 29175098 - 29175135
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  29175098 atgtttgcataagaatattagatttgaagcttgaaaat 29175135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 30488220 - 30488183
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  30488220 atgtttgcataagaatattagatttgaagcttgaaaat 30488183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 35412051 - 35412088
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  35412051 atgtttgcataagaatattagatttgaagcttgaaaat 35412088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 442 - 581
Target Start/End: Original strand, 24566501 - 24566640
Alignment:
Q  442 ttttggtccatttgcatatggagtatcaagcttcaaatctatggttttatttctctgtgagctttcagtcttcaaatctatggttcttcagccatgtttg 541  Q
    |||| ||||||||||||||||| | | |||||| ||||||||| ||||||||  ||||||||| |||| |||||||| |||||| |||||||||||||||    
T  24566501 ttttagtccatttgcatatggatttttaagctttaaatctatgattttattttcctgtgagctctcagccttcaaatttatggtccttcagccatgtttg 24566600  T
Q  542 catatgaatcttagatttgaagcttgaaaatcgatatgca 581  Q
     |||||||| ||||||||||| |||||| ||| |||||||    
T  24566601 tatatgaatattagatttgaaacttgaacatccatatgca 24566640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 442 - 579
Target Start/End: Complemental strand, 43497439 - 43497303
Alignment:
Q  442 ttttggtccatttgcatatggagtatcaagcttcaaatctatggttttatttctctgtgagctttcagtcttcaaatctatggttcttcagccatgtttg 541  Q
    |||||||||||||||||||| | | |||||||||||||  |||||||||||| | | ||   ||||| ||||||||| ||||| |||||| | |||||||    
T  43497439 ttttggtccatttgcatatgaattttcaagcttcaaattcatggttttatttttttatggcatttcaatcttcaaatttatgg-tcttcatctatgtttg 43497341  T
Q  542 catatgaatcttagatttgaagcttgaaaatcgatatg 579  Q
    |||| |||| | | |||||||||||||||||| |||||    
T  43497340 cataagaatatcatatttgaagcttgaaaatctatatg 43497303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 442 - 579
Target Start/End: Original strand, 26187210 - 26187346
Alignment:
Q  442 ttttggtccatttgcatatggagtatcaagcttcaaatctatggttttatttctctgtgagctttcagtcttcaaatctatggttcttcagccatgtttg 541  Q
    ||||||||||||| |||||| | | |||||||||||||  |||||||||||| | | ||  ||| || ||||||||||||||| |||||  | |||||||    
T  26187210 ttttggtccatttacatatgaattttcaagcttcaaattcatggttttatttttttatggccttccaatcttcaaatctatgg-tcttcttctatgtttg 26187308  T
Q  542 catatgaatcttagatttgaagcttgaaaatcgatatg 579  Q
    |||| |||| ||| |  ||||||||||||||| |||||    
T  26187309 cataagaatattaaaaatgaagcttgaaaatccatatg 26187346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 507 - 572
Target Start/End: Complemental strand, 1802756 - 1802691
Alignment:
Q  507 cagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    |||||||||||||||||||| ||||   |||||| ||||||||||||| ||||||| |||||||||    
T  1802756 cagtcttcaaatctatggtttttcacttatgtttacatatgaatcttaaatttgaaacttgaaaat 1802691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 442 - 579
Target Start/End: Complemental strand, 12649712 - 12649576
Alignment:
Q  442 ttttggtccatttgcatatggagtatcaagcttcaaatctatggttttatttctctgtgagctttcagtcttcaaatctatggttcttcagccatgtttg 541  Q
    ||||||||||||| |||||| | | |||| ||||||||  ||||||||||||   | ||  |||||| |||| |||| | |||| || || | |||||||    
T  12649712 ttttggtccattttcatatgaattttcaaacttcaaattcatggttttattttcttatggtctttcaatctttaaatatgtggt-ctccatctatgtttg 12649614  T
Q  542 catatgaatcttagatttgaagcttgaaaatcgatatg 579  Q
    |||| |||| |||||||||||||||||||||| |||||    
T  12649613 cataagaatattagatttgaagcttgaaaatccatatg 12649576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 503 - 572
Target Start/End: Complemental strand, 39198788 - 39198720
Alignment:
Q  503 ctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||||| | || |  | ||||||||||| |||| |||||||||||||||||||||    
T  39198788 ctttcagtcttcaaatctatgatcct-cgtctatgtttgcataagaatattagatttgaagcttgaaaat 39198720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 512 - 572
Target Start/End: Complemental strand, 32478142 - 32478083
Alignment:
Q  512 ttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||| |||| | |||||||||||||||||||||| |||||| || |||||    
T  32478142 ttcaaatctatggtttttca-ctatgtttgcatatgaatcttagaattgaagttttaaaat 32478083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 572
Target Start/End: Complemental strand, 148462 - 148396
Alignment:
Q  505 ttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||| | || || | ||||||||||| |||| ||| |||||||||||||||||    
T  148462 ttcagtcttcaaatctatgatcct-catctatgtttgcataagaatattaaatttgaagcttgaaaat 148396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 493
Target Start/End: Original strand, 2241553 - 2241604
Alignment:
Q  442 ttttggtccatttgcatatggagtatcaagcttcaaatctatggttttattt 493  Q
    ||||||||||||||| |||||| | |||||||||||||  ||||||||||||    
T  2241553 ttttggtccatttgcgtatggattttcaagcttcaaattcatggttttattt 2241604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 8156882 - 8156919
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  8156882 atgtttgcataagaatattagatttgaagcttgaaaat 8156919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 33279110 - 33279147
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  33279110 atgtttgcataagaatattagatttgaagcttgaaaat 33279147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 572
Target Start/End: Original strand, 41617183 - 41617251
Alignment:
Q  503 ctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    |||||| |||||||||||||| |||| |  | ||||||||||| |||| ||||||||||| |||||||||    
T  41617183 ctttcaatcttcaaatctatgattct-cgtctatgtttgcataagaatattagatttgaaacttgaaaat 41617251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 42684928 - 42684891
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  42684928 atgtttgcataagaatattagatttgaagcttgaaaat 42684891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 442 - 581
Target Start/End: Original strand, 34493665 - 34493804
Alignment:
Q  442 ttttggtccatttgcatatggagtatcaagcttcaaatctatggttttatttctctgtgagctttcagtcttcaaatctatggttcttcagccatgtttg 541  Q
    ||||||||| |||| ||||||| | ||||||||||||||||| |||||||||| ||||||||| || || || ||||||||||||||||| ||||| |||    
T  34493665 ttttggtccgtttgaatatggattttcaagcttcaaatctatagttttatttccctgtgagctgtcggtatttaaatctatggttcttcatccatgattg 34493764  T
Q  542 catatgaatcttagatttgaagcttgaaaatcgatatgca 581  Q
    |||||||||||| ||| ||||| ||||||||  |||||||    
T  34493765 catatgaatctttgatgtgaagtttgaaaattcatatgca 34493804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 441 - 572
Target Start/End: Complemental strand, 1368396 - 1368266
Alignment:
Q  441 attttggtccatttgcatatggagtatcaagcttcaaatctatggttttatttctctgtgagctttcagtcttcaaatctatggttcttcagccatgttt 540  Q
    ||||| ||||||||||||||||| | |||||||| ||||||||| ||||||||   ||||| ||  || |||||||||||||| |  ||||  |||||||    
T  1368396 attttcgtccatttgcatatggatt-tcaagctttaaatctatgattttattttcttgtgacctcacaatcttcaaatctatgttctttcattcatgttt 1368298  T
Q  541 gcatatgaatcttagatttgaagcttgaaaat 572  Q
      | ||||||||||||||| ||||||||||||    
T  1368297 tgacatgaatcttagatttaaagcttgaaaat 1368266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 513 - 572
Target Start/End: Complemental strand, 10384250 - 10384191
Alignment:
Q  513 tcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    |||||| |||||||||||| |||||||| ||||||||| ||||||||||| |||||||||    
T  10384250 tcaaatgtatggttcttcacccatgttttcatatgaatattagatttgaaacttgaaaat 10384191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 503 - 572
Target Start/End: Original strand, 8129676 - 8129744
Alignment:
Q  503 ctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||||| |||| |  | ||||||||||| |||| |||||||||||||||||||||    
T  8129676 ctttcagtcttcaaatctatgattct-cgtctatgtttgcataagaatattagatttgaagcttgaaaat 8129744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 448 - 581
Target Start/End: Complemental strand, 1375992 - 1375860
Alignment:
Q  448 tccatttgcatatggagtatcaagcttcaaatctatggttttatttctctgtgagctttcagtcttcaaatctatggttcttcagccatgtttgcatatg 547  Q
    |||||||||||| ||| | |||||||| | |||||||| |||| ||   ||||| || ||| |||||||||||||| |  ||||  ||||||||| ||||    
T  1375992 tccatttgcatacggatt-tcaagctttacatctatggctttactttcatgtgacctctcaatcttcaaatctatgttctttcattcatgtttgcctatg 1375894  T
Q  548 aatcttagatttgaagcttgaaaatcgatatgca 581  Q
    || ||||||||| || |||||||||  |||||||    
T  1375893 aaccttagatttaaaacttgaaaatacatatgca 1375860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 448 - 581
Target Start/End: Complemental strand, 1383740 - 1383608
Alignment:
Q  448 tccatttgcatatggagtatcaagcttcaaatctatggttttatttctctgtgagctttcagtcttcaaatctatggttcttcagccatgtttgcatatg 547  Q
    |||||||||||| ||| | |||||||| | |||||||| |||| ||   ||||| || ||| |||||||||||||| |  ||||  ||||||||| ||||    
T  1383740 tccatttgcatacggatt-tcaagctttacatctatggctttactttcatgtgacctctcaatcttcaaatctatgttctttcattcatgtttgcctatg 1383642  T
Q  548 aatcttagatttgaagcttgaaaatcgatatgca 581  Q
    || ||||||||| || |||||||||  |||||||    
T  1383641 aaccttagatttaaaacttgaaaatacatatgca 1383608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 503 - 572
Target Start/End: Complemental strand, 9546582 - 9546514
Alignment:
Q  503 ctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    |||||| |||||||||||||| |||| |  | ||||||||||| |||| |||||||||||||||||||||    
T  9546582 ctttcaatcttcaaatctatgattct-cgtctatgtttgcataagaatattagatttgaagcttgaaaat 9546514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 473 - 578
Target Start/End: Complemental strand, 17312380 - 17312275
Alignment:
Q  473 ttcaaatctatggttttatttctctgtgagctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||| ||||||||||||  | |||||| | | | ||||||||||||||||||||  ||||||| ||||||| | ||| |||  | ||||||||||    
T  17312380 ttcaaatctttggttttatttcaatttgagctcttaatgttcaaatctatggttcttcactcatgttttcatatgagttttatattcaatgcttgaaaat 17312281  T
Q  573 cgatat 578  Q
    | ||||    
T  17312280 ccatat 17312275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 17853783 - 17853746
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    |||||||||||||||| |||||||||||||||||||||    
T  17853783 atgtttgcatatgaatattagatttgaagcttgaaaat 17853746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 512 - 572
Target Start/End: Complemental strand, 3012075 - 3012016
Alignment:
Q  512 ttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    |||||||||||| | ||||| | ||||||||||| |||| |||||||||||||||||||||    
T  3012075 ttcaaatctatgat-cttcatctatgtttgcataagaatattagatttgaagcttgaaaat 3012016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 512 - 572
Target Start/End: Original strand, 9515503 - 9515563
Alignment:
Q  512 ttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| || |||||  ||||||| ||||||||| |||||||||| ||||||||||    
T  9515503 ttcaaatctattgtccttcactcatgttttcatatgaattttagatttgatgcttgaaaat 9515563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 572
Target Start/End: Complemental strand, 3105773 - 3105707
Alignment:
Q  505 ttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||| | || |  | ||||||||||| |||| |||||||||||||||||||||    
T  3105773 ttcagtcttcaaatctatgatcct-cgtctatgtttgcataagaatgttagatttgaagcttgaaaat 3105707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 685093 - 685056
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  685093 atgtttgcataagaatattagatttgaagcttgaaaat 685056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 2316663 - 2316700
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  2316663 atgtttgcataagaatattagatttgaagcttgaaaat 2316700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 8488002 - 8487965
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  8488002 atgtttgcataagaatattagatttgaagcttgaaaat 8487965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 572
Target Start/End: Original strand, 12240623 - 12240692
Alignment:
Q  503 ctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    |||||||||||||||||||||  || ||  | |||||| |||| |||| ||||||||||||| |||||||    
T  12240623 ctttcagtcttcaaatctatgaatcctcgtctatgtttacataagaatattagatttgaagcatgaaaat 12240692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 13178363 - 13178326
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  13178363 atgtttgcataagaatattagatttgaagcttgaaaat 13178326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 13853282 - 13853245
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  13853282 atgtttgcataagaatattagatttgaagcttgaaaat 13853245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 20027947 - 20027984
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  20027947 atgtttgcataagaatattagatttgaagcttgaaaat 20027984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 22568937 - 22568974
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  22568937 atgtttgcataagaatattagatttgaagcttgaaaat 22568974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 24325132 - 24325095
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  24325132 atgtttgcataagaatattagatttgaagcttgaaaat 24325095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 25026115 - 25026078
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  25026115 atgtttgcatataaatattagatttgaagcttgaaaat 25026078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 8e-32; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 201 - 291
Target Start/End: Complemental strand, 12725435 - 12725345
Alignment:
Q  201 aaaatgcagcaaagaaaatcaacgttgggaagaccatctggaaccgatgcttctgattattcctaccgtatggtagttgattcaagtcagt 291  Q
    ||||||||||||||||||||| ||||||||||||| || |||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  12725435 aaaatgcagcaaagaaaatcagcgttgggaagaccttcaggaaccgatggttctgattattcctaccgtatggttgttgattcaagtcagt 12725345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 441 - 581
Target Start/End: Complemental strand, 33815486 - 33815346
Alignment:
Q  441 attttggtccatttgcatatggagtatcaagcttcaaatctatggttttatttctctgtgagctttcagtcttcaaatctatggttcttcagccatgttt 540  Q
    ||||||| | ||||||||||  | | |||| ||| |||||||| |||||||||| ||||||  | || |||||||||| |||| ||||| | ||||||||    
T  33815486 attttggccgatttgcatatcaattttcaaacttaaaatctatagttttatttccctgtgacttgtcggtcttcaaatttatgattctttatccatgttt 33815387  T
Q  541 gcatatgaatcttagatttgaagcttgaaaatcgatatgca 581  Q
    |||||||||  | |||||| || |||||||||  |||||||    
T  33815386 gcatatgaacatgagattttaaacttgaaaattcatatgca 33815346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 442 - 525
Target Start/End: Complemental strand, 17040140 - 17040057
Alignment:
Q  442 ttttggtccatttgcatatggagtatcaagcttcaaatctatggttttatttctctgtgagctttcagtcttcaaatctatggt 525  Q
    ||||||| |||||||||||||| | |||||||||||||||||| ||||||||   | ||| || ||| ||||||||||||||||    
T  17040140 ttttggttcatttgcatatggattttcaagcttcaaatctatgattttattttcttatgacctctcattcttcaaatctatggt 17040057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 481 - 571
Target Start/End: Complemental strand, 47122631 - 47122541
Alignment:
Q  481 tatggttttatttctctgtgagctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaa 571  Q
    |||| ||||||||| || |||| | ||| || |||||||||| || ||||| | ||||||||||||||||||||||||  |||||||||||    
T  47122631 tatgattttatttccctatgagttctcactcgtcaaatctatagtccttcaccgatgtttgcatatgaatcttagattgaaagcttgaaaa 47122541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 8358546 - 8358583
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8358546 atgtttgcatatgaatcttagatttgaagcttgaaaat 8358583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 451 - 572
Target Start/End: Complemental strand, 30534750 - 30534629
Alignment:
Q  451 atttgcatatggagtatcaagcttcaaatctatggttttatttctctgtgagctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaat 550  Q
    ||||||||||||| | | ||| |||||||||||| |||||||||  | |||||| |  || ||||||||| | || |||||  ||||||| ||||| |||    
T  30534750 atttgcatatggattttaaagattcaaatctatgattttatttcaatttgagctcttcgtgttcaaatctgttgtccttcactcatgttttcatataaat 30534651  T
Q  551 cttagatttgaagcttgaaaat 572  Q
     |||||||||| ||||||||||    
T  30534650 tttagatttgatgcttgaaaat 30534629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 442 - 570
Target Start/End: Complemental strand, 23963079 - 23962952
Alignment:
Q  442 ttttggtccatttgcatatggagtatcaagcttcaaatctatggttttatttctctgtgagctttcagtcttcaaatctatggttcttcagccatgtttg 541  Q
    ||||||| |||||||||||| | | |||| ||||||||  ||||||||||||   | |||  ||||| ||||||||||||||||| |||| | |||||||    
T  23963079 ttttggttcatttgcatatgaattttcaaacttcaaattcatggttttattttcttatgacatttcaatcttcaaatctatggtt-ttcatctatgtttg 23962981  T
Q  542 catatgaatcttagatttgaagcttgaaa 570  Q
    ||||  ||| |||||| |||| |||||||    
T  23962980 cataacaatattagatctgaaacttgaaa 23962952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 386 - 429
Target Start/End: Complemental strand, 12725270 - 12725227
Alignment:
Q  386 tttttgttaattaggttatcaacttgttgcaaagggaaagaaac 429  Q
    ||||||||||||||| |||||||||||||||||||| |||||||    
T  12725270 tttttgttaattagggtatcaacttgttgcaaaggggaagaaac 12725227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 503 - 572
Target Start/End: Complemental strand, 32922238 - 32922170
Alignment:
Q  503 ctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||||| | || |  | ||||||||||| |||| |||||||||||||||||||||    
T  32922238 ctttcagtcttcaaatctatgatcct-cgtctatgtttgcataagaatattagatttgaagcttgaaaat 32922170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 503 - 572
Target Start/End: Original strand, 46689300 - 46689368
Alignment:
Q  503 ctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||||| | || |  | ||||||||||| |||| |||||||||||||||||||||    
T  46689300 ctttcagtcttcaaatctatgatcct-cgtctatgtttgcataagaatattagatttgaagcttgaaaat 46689368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 504 - 572
Target Start/End: Original strand, 7067386 - 7067453
Alignment:
Q  504 tttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    |||||||||||||||||||| | || |  | ||||||||||| |||| |||||||||||||||||||||    
T  7067386 tttcagtcttcaaatctatgatcct-cgtctatgtttgcataagaatattagatttgaagcttgaaaat 7067453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 504 - 572
Target Start/End: Original strand, 52538023 - 52538090
Alignment:
Q  504 tttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    |||||||||||||||||||| | || |  | ||||||||||| |||| |||||||||||||||||||||    
T  52538023 tttcagtcttcaaatctatgatcct-cgtctatgtttgcataagaatattagatttgaagcttgaaaat 52538090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 572
Target Start/End: Complemental strand, 16020126 - 16020060
Alignment:
Q  505 ttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||| | || |  | ||||||||||| |||| |||||||||||||||||||||    
T  16020126 ttcagtcttcaaatctatgatcct-cgtctatgtttgcataagaatattagatttgaagcttgaaaat 16020060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 503 - 578
Target Start/End: Original strand, 18635983 - 18636057
Alignment:
Q  503 ctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaatcgatat 578  Q
    |||||| |||||||||| ||||| ||||| | ||||||| ||| |||| ||||||||||| |||||||||| ||||    
T  18635983 ctttcaatcttcaaatccatggt-cttcatctatgtttgtataagaatattagatttgaaacttgaaaatccatat 18636057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 482
Target Start/End: Complemental strand, 35222068 - 35222021
Alignment:
Q  435 tttgttattttggtccatttgcatatggagtatcaagcttcaaatcta 482  Q
    |||||| |||||||||||||||||||||| | ||| ||||||||||||    
T  35222068 tttgttcttttggtccatttgcatatggattttcatgcttcaaatcta 35222021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 493
Target Start/End: Complemental strand, 54997089 - 54997038
Alignment:
Q  442 ttttggtccatttgcatatggagtatcaagcttcaaatctatggttttattt 493  Q
    ||||||||||||| |||||| | | ||||||||||||| |||||||||||||    
T  54997089 ttttggtccatttacatatgaattttcaagcttcaaatttatggttttattt 54997038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 17362472 - 17362509
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  17362472 atgtttgcataagaatattagatttgaagcttgaaaat 17362509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 22539861 - 22539898
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  22539861 atgtttgcataagaatattagatttgaagcttgaaaat 22539898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 572
Target Start/End: Original strand, 24270505 - 24270573
Alignment:
Q  503 ctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    |||||||||||||||| |||| |||| |  | ||||||||||| |||| ||||||| |||||||||||||    
T  24270505 ctttcagtcttcaaatttatgattct-cttctatgtttgcataagaatattagattcgaagcttgaaaat 24270573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 25331991 - 25332028
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  25331991 atgtttgcataagaatattagatttgaagcttgaaaat 25332028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 26842940 - 26842903
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  26842940 atgtttgcataagaatattagatttgaagcttgaaaat 26842903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 572
Target Start/End: Original strand, 26886753 - 26886821
Alignment:
Q  503 ctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    |||||| |||||||||||||| | || || | |||||| |||| |||| |||||||||||||||||||||    
T  26886753 ctttcaatcttcaaatctatgatcct-catctatgtttacataagaatattagatttgaagcttgaaaat 26886821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 41935633 - 41935596
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  41935633 atgtttgcataagaatattagatttgaagcttgaaaat 41935596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 559
Target Start/End: Original strand, 49860772 - 49860856
Alignment:
Q  474 tcaaatctatggttttatttctctgtgagctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagattt 559  Q
    |||||| |||||||| |||||| |||||| ||||| |||| |||| |||| |  ||||  ||||||||||||||||| ||||||||    
T  49860772 tcaaatatatggtttcatttctttgtgagttttcaatctttaaat-tatgatcattcactcatgtttgcatatgaattttagattt 49860856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 508 - 572
Target Start/End: Complemental strand, 2272644 - 2272580
Alignment:
Q  508 agtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    |||||| |||||||||||| |||||  |||||| ||||||| | ||||||||||  |||||||||    
T  2272644 agtctttaaatctatggtttttcagtgatgttttcatatgacttttagatttgatacttgaaaat 2272580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 535 - 579
Target Start/End: Complemental strand, 30637086 - 30637042
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaatcgatatg 579  Q
    |||||| |||| |||| |||||||||||||||||||||| |||||    
T  30637086 atgtttacataagaatattagatttgaagcttgaaaatccatatg 30637042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 504 - 572
Target Start/End: Original strand, 49387327 - 49387394
Alignment:
Q  504 tttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    |||||||||||||||||||| |||| |  | |||||||||||  ||| |||||||||||| ||||||||    
T  49387327 tttcagtcttcaaatctatgattct-cgtctatgtttgcatagcaatattagatttgaagtttgaaaat 49387394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 441 - 572
Target Start/End: Original strand, 41316973 - 41317103
Alignment:
Q  441 attttggtccatttgcatatggagtatcaagcttcaaatctatggttttatttctctgtgagctttcagtcttcaaatctatggttcttcagccatgttt 540  Q
    |||||||| |||||||||||||| | |||||||||||||||||||||||||||   ||||| ||  || ||||||||||||||||  ||||  |||||||    
T  41316973 attttggttcatttgcatatggatt-tcaagcttcaaatctatggttttattttcttgtgacctcccaatcttcaaatctatggtctttcattcatgttt 41317071  T
Q  541 gcatatgaatcttagatttgaagcttgaaaat 572  Q
    || ||||||| |||||||| ||||||||||||    
T  41317072 gcctatgaattttagatttaaagcttgaaaat 41317103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 451 - 581
Target Start/End: Original strand, 44533586 - 44533716
Alignment:
Q  451 atttgcatatggagtatcaagcttcaaatctatggttttatttctctgtgagctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaat 550  Q
    ||||||||||||| | ||||| ||||||||||||||||||||||  | |||||| | ||| ||||||||| | || |||||  ||||||| |||||||||    
T  44533586 atttgcatatggattttcaagattcaaatctatggttttatttcgatatgagctcttagtgttcaaatcttttgtccttcactcatgttttcatatgaat 44533685  T
Q  551 cttagatttgaagcttgaaaatcgatatgca 581  Q
     ||| |||||| ||||||||||| |||||||    
T  44533686 tttaaatttgatgcttgaaaatccatatgca 44533716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 442 - 578
Target Start/End: Original strand, 43268011 - 43268146
Alignment:
Q  442 ttttggtccatttgcatatggagtatcaagcttcaaatctatggttttatttctctgtgagctttcagtcttcaaatctatggttcttcagccatgtttg 541  Q
    ||||||| |||||  ||||||| | |||||||| |||| |||||||||||||   | ||   ||||| |||||||||||||| | ||||| | || ||||    
T  43268011 ttttggttcatttttatatggattttcaagctttaaatttatggttttattttcttatggcatttcaatcttcaaatctatgat-cttcaactatatttg 43268109  T
Q  542 catatgaatcttagatttgaagcttgaaaatcgatat 578  Q
    |||| |||| |||||||| ||||||||||||||||||    
T  43268110 cataagaatattagatttaaagcttgaaaatcgatat 43268146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 480 - 570
Target Start/End: Complemental strand, 37900634 - 37900544
Alignment:
Q  480 ctatggttttatttctctgtgagctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaa 570  Q
    |||||||| | ||||| ||||||||||  ||||||||||||||| | | | | |||||||||||||| ||| |||||||||||| ||||||    
T  37900634 ctatggttctgtttctttgtgagcttttggtcttcaaatctatgatccattatccatgtttgcatataaatattagatttgaagtttgaaa 37900544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 480 - 570
Target Start/End: Complemental strand, 37907145 - 37907055
Alignment:
Q  480 ctatggttttatttctctgtgagctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaa 570  Q
    |||||||| | ||||| ||||||||||  ||||||||||||||| | | | | |||||||||||||| ||| |||||||||||| ||||||    
T  37907145 ctatggttctgtttctttgtgagcttttggtcttcaaatctatgatccattatccatgtttgcatataaatattagatttgaagtttgaaa 37907055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 441 - 572
Target Start/End: Original strand, 41054674 - 41054805
Alignment:
Q  441 attttggtccatttgcatatggagtatcaagcttcaaatctatggttttatttctctgtgagctttcagtcttcaaatctatggttcttcagccatgttt 540  Q
    ||||||||||||||  |||| || | ||||||||||||| |||||||||||||   | ||  |||||| |||| |||| | ||||| || | | ||||||    
T  41054674 attttggtccatttttatattgattttcaagcttcaaatttatggttttattttcttatggcctttcaatctttaaatttgtggttttttatcaatgttt 41054773  T
Q  541 gcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||| |||| |||||||| ||||| ||||||    
T  41054774 gcataagaatattagatttaaagctcgaaaat 41054805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 505 - 572
Target Start/End: Original strand, 47221852 - 47221918
Alignment:
Q  505 ttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||| | ||||| | ||||||| ||| |||| |||||||||||||||||||||    
T  47221852 ttcagtcttcaaatctatgat-cttcatctatgtttgtataagaatattagatttgaagcttgaaaat 47221918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 572
Target Start/End: Complemental strand, 32064621 - 32064493
Alignment:
Q  442 ttttggtccatttgcatatggagtatcaagcttcaaatctatggttttatttctctgtgagctttcagtcttcaaatctatggttcttcagccatgtttg 541  Q
    |||||||||||||||||| | | | |||||||| ||||  |||||||||||| | | ||   ||||| ||||||||| ||||||| |||| | ||||||     
T  32064621 ttttggtccatttgcataagaattttcaagctttaaattcatggttttatttttatatgca-tttcaatcttcaaatttatggtt-ttcatctatgttta 32064524  T
Q  542 catatgaatcttagatttgaagcttgaaaat 572  Q
    |||| |||| ||||||| |||||||||||||    
T  32064523 cataagaatattagattggaagcttgaaaat 32064493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 503 - 572
Target Start/End: Original strand, 2699760 - 2699828
Alignment:
Q  503 ctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||||| | || |  | ||||||||||| |||| |||||||||||||||||||||    
T  2699760 ctttcagtcttcaaatctatgatcct-cttctatgtttgcataagaatattagatttgaagcttgaaaat 2699828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 503 - 572
Target Start/End: Complemental strand, 31283325 - 31283257
Alignment:
Q  503 ctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||||| ||| ||  | ||||||||||| |||| ||||||||||| |||||||||    
T  31283325 ctttcagtcttcaaatctatg-ttcctcgtctatgtttgcataagaatattagatttgaaacttgaaaat 31283257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 503 - 572
Target Start/End: Complemental strand, 42391467 - 42391399
Alignment:
Q  503 ctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||||| | || |  | ||||||||||| |||| |||||||||||||||||||||    
T  42391467 ctttcagtcttcaaatctatgatcct-cgtctatgtttgcataagaatattagatttgaagcttgaaaat 42391399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 572
Target Start/End: Original strand, 20121350 - 20121416
Alignment:
Q  505 ttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||| | || |  | ||||||||||| |||| |||||||||||||||||||||    
T  20121350 ttcagtcttcaaatctatgatcct-cgtctatgtttgcataagaatattagatttgaagcttgaaaat 20121416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 572
Target Start/End: Complemental strand, 24331548 - 24331482
Alignment:
Q  505 ttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||| | || |  | ||||||||||| |||| |||||||||||||||||||||    
T  24331548 ttcagtcttcaaatctatgatcct-cgtctatgtttgcataagaatattagatttgaagcttgaaaat 24331482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 572
Target Start/End: Original strand, 41749725 - 41749791
Alignment:
Q  505 ttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||| | || |  | ||||||||||| |||| |||||||||||||||||||||    
T  41749725 ttcagtcttcaaatctatgatcct-cgtctatgtttgcataagaatgttagatttgaagcttgaaaat 41749791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 572
Target Start/End: Complemental strand, 41857310 - 41857244
Alignment:
Q  505 ttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||| | || |  | ||||||||||| |||| |||||||||||||||||||||    
T  41857310 ttcagtcttcaaatctatgatcct-cgtctatgtttgcataagaatattagatttgaagcttgaaaat 41857244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 572
Target Start/End: Complemental strand, 44457953 - 44457887
Alignment:
Q  505 ttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||| | || |  | ||||||||||| |||| |||||||||||||||||||||    
T  44457953 ttcagtcttcaaatctatgatcct-cgtctatgtttgcataagaatattagatttgaagcttgaaaat 44457887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 442 - 572
Target Start/End: Complemental strand, 8949524 - 8949395
Alignment:
Q  442 ttttggtccatttgcatatggagtatcaagcttcaaatctatggttttatttctctgtgagctttcagtcttcaaatctatggttcttcagccatgtttg 541  Q
    |||| |||||||| |||||| ||| | |||||| ||||  ||| ||||||||   | ||  |||||| |||||||||||||| | || |  | |||||||    
T  8949524 tttttgtccattttcatatgaagttttaagcttaaaattcatgattttattttcttatggtctttcaatcttcaaatctatgatcct-cgtctatgtttg 8949426  T
Q  542 catatgaatcttagatttgaagcttgaaaat 572  Q
    |||| |||| |||||||||||||||||||||    
T  8949425 cataagaatattagatttgaagcttgaaaat 8949395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 8805884 - 8805847
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  8805884 atgtttgcataagaatattagatttgaagcttgaaaat 8805847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 11338066 - 11338103
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  11338066 atgtttgcataagaatattagatttgaagcttgaaaat 11338103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 17173229 - 17173192
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  17173229 atgtttgcataagaatattagatttgaagcttgaaaat 17173192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 31813904 - 31813941
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  31813904 atgtttgcataagaatattagatttgaagcttgaaaat 31813941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 45055462 - 45055425
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  45055462 atgtttgcataagaatattagatttgaagcttgaaaat 45055425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 46738438 - 46738475
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  46738438 atgtttgcataagaatattagatttgaagcttgaaaat 46738475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 49114445 - 49114482
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  49114445 atgtttgcataagaatgttagatttgaagcttgaaaat 49114482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 442 - 490
Target Start/End: Complemental strand, 10543643 - 10543595
Alignment:
Q  442 ttttggtccatttgcatatggagtatcaagcttcaaatctatggtttta 490  Q
    |||||||||||||  ||||||| | ||||||||||||| ||||||||||    
T  10543643 ttttggtccatttttatatggattttcaagcttcaaatttatggtttta 10543595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 581
Target Start/End: Original strand, 45533809 - 45533857
Alignment:
Q  533 ccatgtttgcatatgaatcttagatttgaagcttgaaaatcgatatgca 581  Q
    |||||||||||||||||||||| |||||||  ||||||||  |||||||    
T  45533809 ccatgtttgcatatgaatcttaaatttgaaatttgaaaattcatatgca 45533857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 442 - 578
Target Start/End: Original strand, 12875748 - 12875884
Alignment:
Q  442 ttttggtccatttgcatatggagtatcaagcttcaaatctatggttttatttctctg-tgagctttcagtcttcaaatctatggttcttcagccatgttt 540  Q
    |||||||||||||  ||||||| | ||||||||||||| ||||||||||||| |||| ||  |||||| ||||||||||||||||| || | | ||||||    
T  12875748 ttttggtccatttttatatggattttcaagcttcaaatttatggttttattt-tctgatggcctttcaatcttcaaatctatggttttttatctatgttt 12875846  T
Q  541 gcatatgaatcttagatttgaagcttgaaaatcgatat 578  Q
    ||||| |||| |||||||| ||||||||||||| ||||    
T  12875847 gcataagaatattagatttaaagcttgaaaatccatat 12875884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 510 - 580
Target Start/End: Original strand, 13675812 - 13675882
Alignment:
Q  510 tcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaatcgatatgc 580  Q
    ||||||||| |||||| ||||| | ||||||||||||||||||||| |||||||||| |||| | ||||||    
T  13675812 tcttcaaatatatggtccttcacctatgtttgcatatgaatcttagctttgaagcttaaaaaaccatatgc 13675882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 503 - 572
Target Start/End: Original strand, 2467202 - 2467270
Alignment:
Q  503 ctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||||| | || |  | ||||||||||| |||| |||||||||||||||||||||    
T  2467202 ctttcagtcttcaaatctatgatcct-cgtctatgtttgcataagaatattagatttgaagcttgaaaat 2467270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 503 - 572
Target Start/End: Original strand, 7601736 - 7601804
Alignment:
Q  503 ctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||||| | || |  | ||||||||||| |||| |||||||||||||||||||||    
T  7601736 ctttcagtcttcaaatctatgatcct-cgtctatgtttgcataagaatattagatttgaagcttgaaaat 7601804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 503 - 572
Target Start/End: Original strand, 13577406 - 13577474
Alignment:
Q  503 ctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    |||||| |||||||||||||| | ||||  | ||||||||||| |||| |||||||||||||||||||||    
T  13577406 ctttcaatcttcaaatctatgat-cttcgtctatgtttgcataagaatattagatttgaagcttgaaaat 13577474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 581
Target Start/End: Complemental strand, 26349282 - 26349238
Alignment:
Q  537 gtttgcatatgaatcttagatttgaagcttgaaaatcgatatgca 581  Q
    |||| ||||||||| |||||||||||||||||||||| |||||||    
T  26349282 gttttcatatgaattttagatttgaagcttgaaaatctatatgca 26349238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 572
Target Start/End: Original strand, 39589721 - 39589787
Alignment:
Q  505 ttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||| | || |  | ||||||||||| |||| |||||||||||||||||||||    
T  39589721 ttcagtcttcaaatctatgatcct-cgtctatgtttgcataagaatattagatttgaagcttgaaaat 39589787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 572
Target Start/End: Complemental strand, 42610950 - 42610884
Alignment:
Q  505 ttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||  |||| |  | ||||||||||| |||| |||||||||||||||||||||    
T  42610950 ttcagtcttcaaatctataattct-cgtctatgtttgcataagaatattagatttgaagcttgaaaat 42610884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 1099066 - 1099103
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  1099066 atgtttgcataagaatattagatttgaagcttgaaaat 1099103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 3279362 - 3279399
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  3279362 atgtttgcataagaatattagatttgaagcttgaaaat 3279399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 13697492 - 13697529
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  13697492 atgtttgcataagaatattagatttgaagcttgaaaat 13697529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 14871874 - 14871837
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  14871874 atgtttgcataagaatattagatttgaagcttgaaaat 14871837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 16736943 - 16736906
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  16736943 atgtttgcataagaatattagatttgaagcttgaaaat 16736906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 18707410 - 18707373
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  18707410 atgtttgcataagaatattagatttgaagcttgaaaat 18707373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 31618341 - 31618378
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  31618341 atgtttgcataagaatattagatttgaagcttgaaaat 31618378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 32772165 - 32772202
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  32772165 atgtttgcataagaatattagatttgaagcttgaaaat 32772202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 33429673 - 33429636
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  33429673 atgtttgcataagaatattagatttgaagcttgaaaat 33429636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 40952208 - 40952171
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  40952208 atgtttgcataagaatattagatttgaagcttgaaaat 40952171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 203 - 291
Target Start/End: Original strand, 34280074 - 34280162
Alignment:
Q  203 aatgcagcaaagaaaatcaacgttgggaagaccatctggaaccgatgcttctgattattcctaccgtatggtagttgattcaagtcagt 291  Q
    |||||| |||||||||||| ||||||||||||| || || ||||| | |||||||||||||||||||||||| ||||||||||||||||    
T  34280074 aatgcaacaaagaaaatcaccgttgggaagaccttcagggaccgacggttctgattattcctaccgtatggtcgttgattcaagtcagt 34280162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 34280231 - 34280273
Alignment:
Q  387 ttttgttaattaggttatcaacttgttgcaaagggaaagaaac 429  Q
    |||||||||||||| |||||||||||||||||||| |||||||    
T  34280231 ttttgttaattagggtatcaacttgttgcaaaggggaagaaac 34280273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 535 - 581
Target Start/End: Original strand, 48738173 - 48738219
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaatcgatatgca 581  Q
    |||||||||||||||| |||||||||||| ||||||||| |||||||    
T  48738173 atgtttgcatatgaatattagatttgaagtttgaaaatctatatgca 48738219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 503 - 572
Target Start/End: Original strand, 45214520 - 45214588
Alignment:
Q  503 ctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    |||| |||||||||||||||| |||| |  | ||||||||||| |||| |||||||||||||||||||||    
T  45214520 ctttgagtcttcaaatctatgattct-cgtctatgtttgcataagaatattagatttgaagcttgaaaat 45214588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 467 - 579
Target Start/End: Complemental strand, 2397993 - 2397882
Alignment:
Q  467 tcaagcttcaaatctatggttttatttctctgtgagctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagctt 566  Q
    |||||||||||||  ||||||||||||   | |||  ||||| ||||||||| |||||| ||||| | || ||| |||| |||| |||||||||||| ||    
T  2397993 tcaagcttcaaattcatggttttattttcttatgacatttcaatcttcaaatttatggt-cttcatctatatttacataagaatattagatttgaagttt 2397895  T
Q  567 gaaaatcgatatg 579  Q
    ||||||| |||||    
T  2397894 gaaaatccatatg 2397882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 572
Target Start/End: Original strand, 25061445 - 25061511
Alignment:
Q  505 ttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||| | || |  | ||||||||||| |||| |||||||||||||||||||||    
T  25061445 ttcagtcttcaaatctatgatcctcct-ctatgtttgcataagaatattagatttgaagcttgaaaat 25061511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 499 - 581
Target Start/End: Complemental strand, 11471941 - 11471860
Alignment:
Q  499 tgagctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaatcgatatgca 581  Q
    |||||||| ||| |||||||||||| | |||||  ||| ||| ||||||||| |||||||||| ||||||||||  |||||||    
T  11471941 tgagcttttagtgttcaaatctatgatccttcactcat-ttttcatatgaattttagatttgatgcttgaaaatgcatatgca 11471860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 510 - 572
Target Start/End: Complemental strand, 29560502 - 29560440
Alignment:
Q  510 tcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||| ||||||  |||| | ||||||||||||||||||||  ||||||| ||||||||    
T  29560502 tcttcaaatatatggtctttcatctatgtttgcatatgaatcttaactttgaagattgaaaat 29560440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 572
Target Start/End: Original strand, 2773299 - 2773367
Alignment:
Q  503 ctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    |||||||||||||||| |||| |||| |  | ||||||||||| |||| | |||||||||||||||||||    
T  2773299 ctttcagtcttcaaatttatgattct-cgtctatgtttgcataagaatataagatttgaagcttgaaaat 2773367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 11221166 - 11221203
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  11221166 atgtttgcataagaatattagatttgaagcttgaaaat 11221203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 13997091 - 13997128
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  13997091 atgtttgcataagaatattagatttgaagcttgaaaat 13997128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 15543139 - 15543102
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  15543139 atgtttgcataagaatattagatttgaagcttgaaaat 15543102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 572
Target Start/End: Complemental strand, 18168925 - 18168857
Alignment:
Q  503 ctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    |||||||||||||||| |||| | ||||  | ||||||||||| |||| | |||||||||||||||||||    
T  18168925 ctttcagtcttcaaatatatgat-cttcgtctatgtttgcataagaatataagatttgaagcttgaaaat 18168857  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 572
Target Start/End: Complemental strand, 28843903 - 28843835
Alignment:
Q  503 ctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    |||||| |||||||||||||| | || || | ||||||||||| |||| |||||||||||| ||||||||    
T  28843903 ctttcaatcttcaaatctatgatcct-catctatgtttgcataagaatattagatttgaagtttgaaaat 28843835  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 29434441 - 29434404
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  29434441 atgtttgcataagaatattagatttgaagcttgaaaat 29434404  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 44664761 - 44664724
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  44664761 atgtttgcataagaatattagatttgaagcttgaaaat 44664724  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 44920038 - 44920001
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  44920038 atgtttgcataagaatattagatttgaagcttgaaaat 44920001  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 46292722 - 46292685
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  46292722 atgtttgcataagaatattagatttgaagcttgaaaat 46292685  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 49002409 - 49002446
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  49002409 atgtttgcataagaatattagatttgaagcttgaaaat 49002446  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 499 - 571
Target Start/End: Complemental strand, 11839358 - 11839287
Alignment:
Q  499 tgagctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaa 571  Q
    |||||||| ||| |||||||||||||| ||| |  ||||||||| ||||||| || ||||||| |||||||||    
T  11839358 tgagcttttagtgttcaaatctatggtactt-actcatgtttgcctatgaattttggatttgatgcttgaaaa 11839287  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 572
Target Start/End: Original strand, 39778454 - 39778490
Alignment:
Q  536 tgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    |||||||||| |||| |||||||||||||||||||||    
T  39778454 tgtttgcataagaatattagatttgaagcttgaaaat 39778490  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 504 - 572
Target Start/End: Complemental strand, 44036856 - 44036789
Alignment:
Q  504 tttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||| |||||||||||||| |||| |  | ||||||||||| |||| ||||||||||| |||||||||    
T  44036856 tttcaatcttcaaatctatgattct-cgtctatgtttgcataagaatattagatttgaaacttgaaaat 44036789  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 572
Target Start/End: Original strand, 258900 - 258966
Alignment:
Q  505 ttcagtcttcaaatctatggttcttcagccatgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||||||||||| | || |  | ||||||||||| |||| |||||||||||||||||||||    
T  258900 ttcagtcttcaaatctatgatcct-cgtctatgtttgcataagaatattagatttgaagcttgaaaat 258966  T

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Target: scaffold0592 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 8562 - 8599
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  8562 atgtttgcataagaatattagatttgaagcttgaaaat 8599  T

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Target: scaffold0119 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 41419 - 41382
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  41419 atgtttgcataagaatattagatttgaagcttgaaaat 41382  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 323587 - 323624
Alignment:
Q  535 atgtttgcatatgaatcttagatttgaagcttgaaaat 572  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  323587 atgtttgcataagaatattagatttgaagcttgaaaat 323624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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