View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20523_high_8 (Length: 362)
Name: NF20523_high_8
Description: NF20523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20523_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 16 - 351
Target Start/End: Complemental strand, 4116973 - 4116638
Alignment:
| Q |
16 |
atttatgtctgatgtgcagtgaccagagcaggttatttataacattctctaatttaatttgcattgcataaatttcacttttcaatgagattgagtttga |
115 |
Q |
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| T |
4116973 |
atttatgtctgatgtgcagtgaccagagcaggttatttataacattctctaatttaatttgcattgcataaatttcacttttcaatgagattgagtttga |
4116874 |
T |
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| Q |
116 |
accacttatagactatagcgagggattttgattttcggaagtcacgtagttatgaatctcgatcatttgataacgatctggaagtttgtatttgaagatg |
215 |
Q |
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| T |
4116873 |
acctcttatagactatagcgagggattttgattttcggaagtcacgtagttatgaatctcgatcatttgataacgatctggaagtttgtatttgaagatg |
4116774 |
T |
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| Q |
216 |
tgtatttaaaaactgtcggatcttcatgcaatggtcgacatcccttcaatacgcgcatgtgtgcttttcctgattgcaggaaattctagtatataagctc |
315 |
Q |
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| T |
4116773 |
tgtatttaaaaactgtcggatcttcatgcaatggtcgacatcacttcaatacgcgcatgtgtgcttttcctgattgcaggaaattctagtctataagctc |
4116674 |
T |
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| Q |
316 |
atgaaactaagttgtgtacattttacaggtcttcat |
351 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
4116673 |
atgaaactaagttgtgtacattttacaggtcttcat |
4116638 |
T |
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